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annotate OrthancServer/Sources/Database/StatelessDatabaseOperations.h @ 5044:6fed78e13233

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Refactored DicomMap to handle sequences when needed
author Alain Mazy <am@osimis.io>
date Tue, 28 Jun 2022 17:45:09 +0200
parents ec5c203a97ea
children e95fadefeb72
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../../../OrthancFramework/Sources/DicomFormat/DicomMap.h"
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26
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27 #include "IDatabaseWrapper.h"
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28 #include "../DicomInstanceOrigin.h"
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29
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30 #include <boost/shared_ptr.hpp>
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31 #include <boost/thread/shared_mutex.hpp>
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32
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33
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34 namespace Orthanc
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35 {
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36 class DatabaseLookup;
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37 class ParsedDicomFile;
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38 struct ServerIndexChange;
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39
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40 struct ExpandedResource : public boost::noncopyable
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41 {
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42 std::string id_;
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43 DicomMap tags_; // all main tags and main sequences from DB
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44 std::string mainDicomTagsSignature_;
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45 std::string parentId_;
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46 std::list<std::string> childrenIds_;
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47 std::map<MetadataType, std::string> metadata_;
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48 ResourceType type_;
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49 std::string anonymizedFrom_;
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50 std::string modifiedFrom_;
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51 std::string lastUpdate_;
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52 std::set<DicomTag> missingRequestedTags_;
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53
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54 // for patients/studies/series
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55 bool isStable_;
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56
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57 // for series only
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58 int expectedNumberOfInstances_;
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59 std::string status_;
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60
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61 // for instances only
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62 size_t fileSize_;
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63 std::string fileUuid_;
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64 int indexInSeries_;
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65 };
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66
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67 enum ExpandResourceDbFlags
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68 {
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69 ExpandResourceDbFlags_None = 0,
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70 ExpandResourceDbFlags_IncludeMetadata = (1 << 0),
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71 ExpandResourceDbFlags_IncludeChildren = (1 << 1),
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72 ExpandResourceDbFlags_IncludeMainDicomTags = (1 << 2),
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73
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74 ExpandResourceDbFlags_Default = (ExpandResourceDbFlags_IncludeMetadata |
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75 ExpandResourceDbFlags_IncludeChildren |
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76 ExpandResourceDbFlags_IncludeMainDicomTags)
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77 };
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78
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79 class StatelessDatabaseOperations : public boost::noncopyable
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80 {
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81 public:
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82 typedef std::list<FileInfo> Attachments;
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83 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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84
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85 class ITransactionContext : public IDatabaseListener
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86 {
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87 public:
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88 virtual ~ITransactionContext()
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89 {
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90 }
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91
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92 virtual void Commit() = 0;
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93
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94 virtual int64_t GetCompressedSizeDelta() = 0;
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95
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96 virtual bool IsUnstableResource(int64_t id) = 0;
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97
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98 virtual bool LookupRemainingLevel(std::string& remainingPublicId /* out */,
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99 ResourceType& remainingLevel /* out */) = 0;
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100
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101 virtual void MarkAsUnstable(int64_t id,
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102 Orthanc::ResourceType type,
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103 const std::string& publicId) = 0;
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104
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105 virtual void SignalAttachmentsAdded(uint64_t compressedSize) = 0;
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106
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107 virtual void SignalChange(const ServerIndexChange& change) = 0;
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108 };
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109
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110
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111 class ITransactionContextFactory : public boost::noncopyable
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112 {
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113 public:
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114 virtual ~ITransactionContextFactory()
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115 {
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116 }
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117
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118 // WARNING: This method can be invoked from several threads concurrently
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119 virtual ITransactionContext* Create() = 0;
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120 };
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121
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122
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123 class ReadOnlyTransaction : public boost::noncopyable
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124 {
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125 private:
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126 ITransactionContext& context_;
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127
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128 protected:
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129 IDatabaseWrapper::ITransaction& transaction_;
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130
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131 public:
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132 explicit ReadOnlyTransaction(IDatabaseWrapper::ITransaction& transaction,
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133 ITransactionContext& context) :
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134 context_(context),
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135 transaction_(transaction)
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136 {
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137 }
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138
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139 ITransactionContext& GetTransactionContext()
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140 {
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141 return context_;
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142 }
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143
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144 /**
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145 * Higher-level constructions
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146 **/
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147
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148 SeriesStatus GetSeriesStatus(int64_t id,
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149 int64_t expectedNumberOfInstances);
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150
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151
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152 /**
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153 * Read-only methods from "IDatabaseWrapper"
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154 **/
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155
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156 void ApplyLookupResources(std::list<std::string>& resourcesId,
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157 std::list<std::string>* instancesId, // Can be NULL if not needed
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158 const std::vector<DatabaseConstraint>& lookup,
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159 ResourceType queryLevel,
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160 size_t limit)
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161 {
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162 return transaction_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit);
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163 }
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164
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165 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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166 int64_t id)
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167 {
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168 transaction_.GetAllMetadata(target, id);
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169 }
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170
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171 void GetAllPublicIds(std::list<std::string>& target,
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172 ResourceType resourceType)
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173 {
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174 return transaction_.GetAllPublicIds(target, resourceType);
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175 }
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176
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177 void GetAllPublicIds(std::list<std::string>& target,
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178 ResourceType resourceType,
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179 size_t since,
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180 size_t limit)
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181 {
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182 return transaction_.GetAllPublicIds(target, resourceType, since, limit);
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183 }
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184
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185 void GetChanges(std::list<ServerIndexChange>& target /*out*/,
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186 bool& done /*out*/,
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187 int64_t since,
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188 uint32_t maxResults)
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189 {
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190 transaction_.GetChanges(target, done, since, maxResults);
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191 }
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192
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193 void GetChildrenInternalId(std::list<int64_t>& target,
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194 int64_t id)
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195 {
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196 transaction_.GetChildrenInternalId(target, id);
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197 }
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198
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199 void GetChildrenPublicId(std::list<std::string>& target,
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200 int64_t id)
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201 {
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202 transaction_.GetChildrenPublicId(target, id);
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203 }
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204
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205 void GetExportedResources(std::list<ExportedResource>& target /*out*/,
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206 bool& done /*out*/,
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207 int64_t since,
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208 uint32_t maxResults)
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209 {
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210 return transaction_.GetExportedResources(target, done, since, maxResults);
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211 }
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212
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213 void GetLastChange(std::list<ServerIndexChange>& target /*out*/)
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214 {
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215 transaction_.GetLastChange(target);
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216 }
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217
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218 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/)
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219 {
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220 return transaction_.GetLastExportedResource(target);
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221 }
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222
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223 int64_t GetLastChangeIndex()
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224 {
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225 return transaction_.GetLastChangeIndex();
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226 }
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227
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228 void GetMainDicomTags(DicomMap& map,
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229 int64_t id)
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230 {
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231 transaction_.GetMainDicomTags(map, id);
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232 }
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233
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234 std::string GetPublicId(int64_t resourceId)
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235 {
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236 return transaction_.GetPublicId(resourceId);
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237 }
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238
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239 uint64_t GetResourcesCount(ResourceType resourceType)
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240 {
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241 return transaction_.GetResourcesCount(resourceType);
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242 }
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243
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244 ResourceType GetResourceType(int64_t resourceId)
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245 {
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246 return transaction_.GetResourceType(resourceId);
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247 }
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248
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249 uint64_t GetTotalCompressedSize()
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250 {
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251 return transaction_.GetTotalCompressedSize();
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252 }
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253
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254 uint64_t GetTotalUncompressedSize()
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255 {
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256 return transaction_.GetTotalUncompressedSize();
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257 }
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258
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259 bool IsProtectedPatient(int64_t internalId)
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260 {
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261 return transaction_.IsProtectedPatient(internalId);
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262 }
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263
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264 void ListAvailableAttachments(std::set<FileContentType>& target,
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265 int64_t id)
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266 {
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267 transaction_.ListAvailableAttachments(target, id);
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268 }
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269
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270 bool LookupAttachment(FileInfo& attachment,
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271 int64_t& revision,
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272 int64_t id,
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273 FileContentType contentType)
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274 {
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275 return transaction_.LookupAttachment(attachment, revision, id, contentType);
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276 }
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277
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278 bool LookupGlobalProperty(std::string& target,
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279 GlobalProperty property,
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280 bool shared)
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281 {
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282 return transaction_.LookupGlobalProperty(target, property, shared);
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283 }
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284
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285 bool LookupMetadata(std::string& target,
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286 int64_t& revision,
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287 int64_t id,
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288 MetadataType type)
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289 {
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290 return transaction_.LookupMetadata(target, revision, id, type);
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291 }
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292
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293 bool LookupParent(int64_t& parentId,
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294 int64_t resourceId)
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295 {
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296 return transaction_.LookupParent(parentId, resourceId);
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297 }
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298
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299 bool LookupResource(int64_t& id,
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300 ResourceType& type,
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301 const std::string& publicId)
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302 {
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303 return transaction_.LookupResource(id, type, publicId);
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304 }
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305
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306 bool LookupResourceAndParent(int64_t& id,
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307 ResourceType& type,
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308 std::string& parentPublicId,
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309 const std::string& publicId)
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310 {
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311 return transaction_.LookupResourceAndParent(id, type, parentPublicId, publicId);
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312 }
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313 };
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314
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315
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316 class ReadWriteTransaction : public ReadOnlyTransaction
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317 {
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318 public:
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319 ReadWriteTransaction(IDatabaseWrapper::ITransaction& transaction,
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320 ITransactionContext& context) :
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321 ReadOnlyTransaction(transaction, context)
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322 {
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323 }
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324
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325 void AddAttachment(int64_t id,
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diff changeset
326 const FileInfo& attachment,
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327 int64_t revision)
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328 {
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329 transaction_.AddAttachment(id, attachment, revision);
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330 }
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331
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332 void ClearChanges()
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333 {
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334 transaction_.ClearChanges();
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335 }
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336
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337 void ClearExportedResources()
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338 {
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339 transaction_.ClearExportedResources();
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340 }
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341
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342 void ClearMainDicomTags(int64_t id)
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343 {
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344 return transaction_.ClearMainDicomTags(id);
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345 }
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346
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347 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */
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348 int64_t& instanceId, /* out */
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349 const std::string& patient,
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350 const std::string& study,
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351 const std::string& series,
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352 const std::string& instance)
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353 {
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354 return transaction_.CreateInstance(result, instanceId, patient, study, series, instance);
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355 }
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356
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357 void DeleteAttachment(int64_t id,
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diff changeset
358 FileContentType attachment)
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diff changeset
359 {
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360 return transaction_.DeleteAttachment(id, attachment);
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361 }
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diff changeset
362
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diff changeset
363 void DeleteMetadata(int64_t id,
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diff changeset
364 MetadataType type)
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diff changeset
365 {
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diff changeset
366 transaction_.DeleteMetadata(id, type);
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diff changeset
367 }
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diff changeset
368
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diff changeset
369 void DeleteResource(int64_t id)
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diff changeset
370 {
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diff changeset
371 transaction_.DeleteResource(id);
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diff changeset
372 }
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diff changeset
373
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diff changeset
374 void LogChange(int64_t internalId,
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diff changeset
375 ChangeType changeType,
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diff changeset
376 ResourceType resourceType,
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diff changeset
377 const std::string& publicId);
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diff changeset
378
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diff changeset
379 void LogExportedResource(const ExportedResource& resource)
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diff changeset
380 {
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diff changeset
381 transaction_.LogExportedResource(resource);
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diff changeset
382 }
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diff changeset
383
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diff changeset
384 void SetGlobalProperty(GlobalProperty property,
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diff changeset
385 bool shared,
4586
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diff changeset
386 const std::string& value)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 {
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
388 transaction_.SetGlobalProperty(property, shared, value);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 void SetMetadata(int64_t id,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 MetadataType type,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
393 const std::string& value,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
394 int64_t revision)
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
396 return transaction_.SetMetadata(id, type, value, revision);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 void SetProtectedPatient(int64_t internalId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 bool isProtected)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
402 transaction_.SetProtectedPatient(internalId, isProtected);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 void SetResourcesContent(const ResourcesContent& content)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
407 transaction_.SetResourcesContent(content);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 void Recycle(uint64_t maximumStorageSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 unsigned int maximumPatients,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 uint64_t addedInstanceSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 const std::string& newPatientId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 class IReadOnlyOperations : public boost::noncopyable
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 public:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 virtual ~IReadOnlyOperations()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 virtual void Apply(ReadOnlyTransaction& transaction) = 0;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 class IReadWriteOperations : public boost::noncopyable
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 public:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 virtual ~IReadWriteOperations()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 virtual void Apply(ReadWriteTransaction& transaction) = 0;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 private:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 class MainDicomTagsRegistry;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 class Transaction;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
443 IDatabaseWrapper& db_;
4613
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
444 boost::shared_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; // "shared_ptr" because of PImpl
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
445 bool hasFlushToDisk_;
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
446
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
447 // Mutex to protect the configuration options
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
448 boost::shared_mutex mutex_;
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 std::unique_ptr<ITransactionContextFactory> factory_;
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
450 unsigned int maxRetries_;
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 void NormalizeLookup(std::vector<DatabaseConstraint>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 const DatabaseLookup& source,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 ResourceType level) const;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 void ApplyInternal(IReadOnlyOperations* readOperations,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 IReadWriteOperations* writeOperations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 protected:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 void StandaloneRecycling(uint64_t maximumStorageSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 unsigned int maximumPatientCount);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 public:
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
464 explicit StatelessDatabaseOperations(IDatabaseWrapper& database);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 void SetTransactionContextFactory(ITransactionContextFactory* factory /* takes ownership */);
4613
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
467
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
468 // Only used to handle "ErrorCode_DatabaseCannotSerialize" in the
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
469 // case of collision between multiple writers
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
470 void SetMaxDatabaseRetries(unsigned int maxRetries);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 // It is assumed that "GetDatabaseVersion()" can run out of a
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 // database transaction
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 unsigned int GetDatabaseVersion()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 return db_.GetDatabaseVersion();
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
479 void FlushToDisk();
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
480
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
481 bool HasFlushToDisk() const
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
482 {
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
483 return hasFlushToDisk_;
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
484 }
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
485
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 void Apply(IReadOnlyOperations& operations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 void Apply(IReadWriteOperations& operations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
490 bool ExpandResource(ExpandedResource& target,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 const std::string& publicId,
4697
569d9ef165b1 Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
492 ResourceType level,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
493 const std::set<DicomTag>& requestedTags,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
494 ExpandResourceDbFlags expandFlags);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 void GetAllMetadata(std::map<MetadataType, std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 ResourceType level);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 void GetAllUuids(std::list<std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 ResourceType resourceType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 void GetAllUuids(std::list<std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 ResourceType resourceType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 size_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 size_t limit);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 void GetGlobalStatistics(/* out */ uint64_t& diskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 /* out */ uint64_t& uncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 /* out */ uint64_t& countPatients,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 /* out */ uint64_t& countStudies,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 /* out */ uint64_t& countSeries,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 /* out */ uint64_t& countInstances);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 bool LookupAttachment(FileInfo& attachment,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
516 int64_t& revision,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517 const std::string& instancePublicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 FileContentType contentType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 void GetChanges(Json::Value& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 int64_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 unsigned int maxResults);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 void GetLastChange(Json::Value& target);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 void GetExportedResources(Json::Value& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 int64_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528 unsigned int maxResults);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 void GetLastExportedResource(Json::Value& target);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 bool IsProtectedPatient(const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 void GetChildren(std::list<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
536
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537 void GetChildInstances(std::list<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540 bool LookupMetadata(std::string& target,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
541 int64_t& revision,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543 ResourceType expectedType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
544 MetadataType type);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 void ListAvailableAttachments(std::set<FileContentType>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 ResourceType expectedType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 bool LookupParent(std::string& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 void GetResourceStatistics(/* out */ ResourceType& type,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 /* out */ uint64_t& diskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 /* out */ uint64_t& uncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 /* out */ unsigned int& countStudies,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 /* out */ unsigned int& countSeries,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 /* out */ unsigned int& countInstances,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 /* out */ uint64_t& dicomDiskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560 /* out */ uint64_t& dicomUncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
562
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 void LookupIdentifierExact(std::vector<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 ResourceType level,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 const DicomTag& tag,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 const std::string& value);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 bool LookupGlobalProperty(std::string& value,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
569 GlobalProperty property,
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
570 bool shared);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 std::string GetGlobalProperty(GlobalProperty property,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
573 bool shared,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 const std::string& defaultValue);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 bool GetMainDicomTags(DicomMap& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 ResourceType expectedType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 ResourceType levelOfInterest);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581 // Only applicable at the instance level
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582 bool GetAllMainDicomTags(DicomMap& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 const std::string& instancePublicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 bool LookupResourceType(ResourceType& type,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588 bool LookupParent(std::string& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
590 ResourceType parentType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
591
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
592 void ApplyLookupResources(std::vector<std::string>& resourcesId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 std::vector<std::string>* instancesId, // Can be NULL if not needed
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 const DatabaseLookup& lookup,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 ResourceType queryLevel,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 size_t limit);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4640
diff changeset
598 bool DeleteResource(Json::Value& remainingAncestor /* out */,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 const std::string& uuid,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 ResourceType expectedType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 void LogExportedResource(const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 const std::string& remoteModality);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 void SetProtectedPatient(const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 bool isProtected);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
608 void SetMetadata(int64_t& newRevision /*out*/,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
609 const std::string& publicId,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 MetadataType type,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
611 const std::string& value,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
612 bool hasOldRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
613 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
614 const std::string& oldMD5);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
616 // Same as "SetMetadata()", but doesn't care about revisions
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
617 void OverwriteMetadata(const std::string& publicId,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
618 MetadataType type,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
619 const std::string& value);
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
620
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
621 bool DeleteMetadata(const std::string& publicId,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
622 MetadataType type,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
623 bool hasRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
624 int64_t revision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
625 const std::string& md5);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
627 uint64_t IncrementGlobalSequence(GlobalProperty sequence,
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
628 bool shared);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630 void DeleteChanges();
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
632 void DeleteExportedResources();
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634 void SetGlobalProperty(GlobalProperty property,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
635 bool shared,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 const std::string& value);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
638 bool DeleteAttachment(const std::string& publicId,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
639 FileContentType type,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
640 bool hasRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
641 int64_t revision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
642 const std::string& md5);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
644 void LogChange(int64_t internalId,
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
645 ChangeType changeType,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647 ResourceType level);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
649 void ReconstructInstance(const ParsedDicomFile& dicom);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
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652 const DicomMap& dicomSummary,
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Sebastien Jodogne <s.jodogne@gmail.com>
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653 const Attachments& attachments,
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Sebastien Jodogne <s.jodogne@gmail.com>
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654 const MetadataMap& metadata,
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Sebastien Jodogne <s.jodogne@gmail.com>
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655 const DicomInstanceOrigin& origin,
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Sebastien Jodogne <s.jodogne@gmail.com>
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656 bool overwrite,
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Sebastien Jodogne <s.jodogne@gmail.com>
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657 bool hasTransferSyntax,
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Sebastien Jodogne <s.jodogne@gmail.com>
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658 DicomTransferSyntax transferSyntax,
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Sebastien Jodogne <s.jodogne@gmail.com>
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659 bool hasPixelDataOffset,
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Sebastien Jodogne <s.jodogne@gmail.com>
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660 uint64_t pixelDataOffset,
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Sebastien Jodogne <s.jodogne@gmail.com>
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661 uint64_t maximumStorageSize,
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4940
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662 unsigned int maximumPatients,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4940
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663 bool isReconstruct);
4586
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parents:
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664
4627
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
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665 StoreStatus AddAttachment(int64_t& newRevision /*out*/,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
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666 const FileInfo& attachment,
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Sebastien Jodogne <s.jodogne@gmail.com>
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667 const std::string& publicId,
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Sebastien Jodogne <s.jodogne@gmail.com>
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668 uint64_t maximumStorageSize,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
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669 unsigned int maximumPatients,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
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670 bool hasOldRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
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671 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
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672 const std::string& oldMd5);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
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673 };
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Sebastien Jodogne <s.jodogne@gmail.com>
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674 }