Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3909:6762a97deabc transcoding
removed useless abstraction IDicomTranscoder::TranscodeToBuffer()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 08 May 2020 11:40:12 +0200 |
parents | aaaa442bfe39 |
children | 100fbe970762 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
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41 #include "../Core/DicomFormat/DicomArray.h" |
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42 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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43 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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44 #include "../Core/Logging.h" |
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45 #include "../Core/Toolbox.h" |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "DicomInstanceToStore.h" |
8 | 49 #include "EmbeddedResources.h" |
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50 #include "OrthancConfiguration.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "Search/DicomTagConstraint.h" |
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53 #include "ServerContext.h" |
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54 #include "ServerIndexChange.h" |
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55 #include "ServerToolbox.h" |
0 | 56 |
57 #include <boost/lexical_cast.hpp> | |
58 #include <stdio.h> | |
59 | |
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60 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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61 |
62 | 62 namespace Orthanc |
0 | 63 { |
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64 static void CopyListToVector(std::vector<std::string>& target, |
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65 const std::list<std::string>& source) |
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66 { |
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67 target.resize(source.size()); |
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68 |
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69 size_t pos = 0; |
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70 |
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71 for (std::list<std::string>::const_iterator |
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72 it = source.begin(); it != source.end(); ++it) |
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73 { |
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74 target[pos] = *it; |
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75 pos ++; |
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76 } |
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77 } |
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78 |
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79 |
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80 class ServerIndex::Listener : public IDatabaseListener |
0 | 81 { |
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82 private: |
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83 struct FileToRemove |
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84 { |
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85 private: |
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86 std::string uuid_; |
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87 FileContentType type_; |
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88 |
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89 public: |
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90 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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91 type_(info.GetContentType()) |
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92 { |
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93 } |
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94 |
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95 const std::string& GetUuid() const |
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96 { |
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97 return uuid_; |
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98 } |
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99 |
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100 FileContentType GetContentType() const |
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101 { |
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102 return type_; |
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103 } |
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104 }; |
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105 |
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106 ServerContext& context_; |
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107 bool hasRemainingLevel_; |
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108 ResourceType remainingType_; |
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109 std::string remainingPublicId_; |
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110 std::list<FileToRemove> pendingFilesToRemove_; |
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111 std::list<ServerIndexChange> pendingChanges_; |
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112 uint64_t sizeOfFilesToRemove_; |
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113 bool insideTransaction_; |
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114 |
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115 void Reset() |
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116 { |
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117 sizeOfFilesToRemove_ = 0; |
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118 hasRemainingLevel_ = false; |
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119 pendingFilesToRemove_.clear(); |
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120 pendingChanges_.clear(); |
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121 } |
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122 |
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123 public: |
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124 Listener(ServerContext& context) : context_(context), |
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125 insideTransaction_(false) |
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126 { |
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127 Reset(); |
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128 assert(ResourceType_Patient < ResourceType_Study && |
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129 ResourceType_Study < ResourceType_Series && |
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130 ResourceType_Series < ResourceType_Instance); |
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131 } |
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132 |
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133 void StartTransaction() |
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134 { |
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135 Reset(); |
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136 insideTransaction_ = true; |
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137 } |
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138 |
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139 void EndTransaction() |
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140 { |
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141 insideTransaction_ = false; |
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142 } |
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143 |
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144 uint64_t GetSizeOfFilesToRemove() |
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145 { |
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146 return sizeOfFilesToRemove_; |
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147 } |
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148 |
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149 void CommitFilesToRemove() |
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150 { |
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151 for (std::list<FileToRemove>::const_iterator |
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152 it = pendingFilesToRemove_.begin(); |
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153 it != pendingFilesToRemove_.end(); ++it) |
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154 { |
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155 try |
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156 { |
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157 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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158 } |
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159 catch (OrthancException& e) |
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160 { |
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161 LOG(ERROR) << "Unable to remove an attachment from the storage area: " |
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162 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")"; |
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163 } |
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164 } |
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165 } |
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166 |
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167 void CommitChanges() |
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168 { |
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169 for (std::list<ServerIndexChange>::const_iterator |
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170 it = pendingChanges_.begin(); |
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171 it != pendingChanges_.end(); ++it) |
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172 { |
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173 context_.SignalChange(*it); |
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174 } |
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175 } |
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176 |
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177 virtual void SignalRemainingAncestor(ResourceType parentType, |
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178 const std::string& publicId) |
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179 { |
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180 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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181 |
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182 if (hasRemainingLevel_) |
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183 { |
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184 if (parentType < remainingType_) |
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185 { |
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186 remainingType_ = parentType; |
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187 remainingPublicId_ = publicId; |
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188 } |
1158 | 189 } |
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190 else |
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191 { |
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192 hasRemainingLevel_ = true; |
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193 remainingType_ = parentType; |
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194 remainingPublicId_ = publicId; |
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195 } |
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196 } |
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197 |
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198 virtual void SignalFileDeleted(const FileInfo& info) |
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199 { |
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200 assert(Toolbox::IsUuid(info.GetUuid())); |
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201 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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202 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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203 } |
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204 |
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205 virtual void SignalChange(const ServerIndexChange& change) |
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206 { |
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207 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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208 << EnumerationToString(change.GetResourceType()) << ": " |
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209 << EnumerationToString(change.GetChangeType()); |
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210 |
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211 if (insideTransaction_) |
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212 { |
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213 pendingChanges_.push_back(change); |
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214 } |
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215 else |
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216 { |
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217 context_.SignalChange(change); |
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218 } |
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219 } |
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220 |
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221 bool HasRemainingLevel() const |
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222 { |
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223 return hasRemainingLevel_; |
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224 } |
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225 |
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226 ResourceType GetRemainingType() const |
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227 { |
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228 assert(HasRemainingLevel()); |
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229 return remainingType_; |
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230 } |
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231 |
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232 const std::string& GetRemainingPublicId() const |
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233 { |
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234 assert(HasRemainingLevel()); |
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235 return remainingPublicId_; |
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236 } |
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237 }; |
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239 | |
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240 class ServerIndex::Transaction |
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241 { |
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242 private: |
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243 ServerIndex& index_; |
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244 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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245 bool isCommitted_; |
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246 |
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247 public: |
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248 Transaction(ServerIndex& index) : |
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249 index_(index), |
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250 isCommitted_(false) |
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251 { |
1247 | 252 transaction_.reset(index_.db_.StartTransaction()); |
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253 transaction_->Begin(); |
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254 |
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255 index_.listener_->StartTransaction(); |
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256 } |
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257 |
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258 ~Transaction() |
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259 { |
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260 index_.listener_->EndTransaction(); |
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261 |
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262 if (!isCommitted_) |
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263 { |
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264 transaction_->Rollback(); |
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265 } |
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266 } |
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267 |
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268 void Commit(uint64_t sizeOfAddedFiles) |
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269 { |
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270 if (!isCommitted_) |
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271 { |
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272 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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273 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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274 |
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275 transaction_->Commit(delta); |
278
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276 |
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277 // We can remove the files once the SQLite transaction has |
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278 // been successfully committed. Some files might have to be |
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279 // deleted because of recycling. |
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280 index_.listener_->CommitFilesToRemove(); |
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281 |
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282 // Send all the pending changes to the Orthanc plugins |
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283 index_.listener_->CommitChanges(); |
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284 |
278
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285 isCommitted_ = true; |
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286 } |
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287 } |
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288 }; |
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289 |
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290 |
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291 class ServerIndex::UnstableResourcePayload |
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292 { |
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293 private: |
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294 ResourceType type_; |
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295 std::string publicId_; |
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296 boost::posix_time::ptime time_; |
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297 |
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298 public: |
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299 UnstableResourcePayload() : type_(ResourceType_Instance) |
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300 { |
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301 } |
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302 |
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303 UnstableResourcePayload(Orthanc::ResourceType type, |
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304 const std::string& publicId) : |
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305 type_(type), |
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306 publicId_(publicId) |
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307 { |
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308 time_ = boost::posix_time::second_clock::local_time(); |
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309 } |
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310 |
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311 unsigned int GetAge() const |
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312 { |
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313 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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314 } |
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315 |
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316 ResourceType GetResourceType() const |
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317 { |
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318 return type_; |
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319 } |
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320 |
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321 const std::string& GetPublicId() const |
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322 { |
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323 return publicId_; |
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324 } |
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325 }; |
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326 |
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327 |
3027 | 328 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
329 { | |
330 private: | |
331 class TagInfo | |
332 { | |
333 private: | |
334 ResourceType level_; | |
335 DicomTagType type_; | |
336 | |
337 public: | |
338 TagInfo() | |
339 { | |
340 } | |
341 | |
342 TagInfo(ResourceType level, | |
343 DicomTagType type) : | |
344 level_(level), | |
345 type_(type) | |
346 { | |
347 } | |
348 | |
349 ResourceType GetLevel() const | |
350 { | |
351 return level_; | |
352 } | |
353 | |
354 DicomTagType GetType() const | |
355 { | |
356 return type_; | |
357 } | |
358 }; | |
359 | |
360 typedef std::map<DicomTag, TagInfo> Registry; | |
361 | |
362 | |
363 Registry registry_; | |
364 | |
365 void LoadTags(ResourceType level) | |
366 { | |
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367 { |
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368 const DicomTag* tags = NULL; |
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369 size_t size; |
3027 | 370 |
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371 ServerToolbox::LoadIdentifiers(tags, size, level); |
3027 | 372 |
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373 for (size_t i = 0; i < size; i++) |
3027 | 374 { |
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375 if (registry_.find(tags[i]) == registry_.end()) |
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376 { |
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377 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); |
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378 } |
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379 else |
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380 { |
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381 // These patient-level tags are copied in the study level |
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382 assert(level == ResourceType_Study && |
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383 (tags[i] == DICOM_TAG_PATIENT_ID || |
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384 tags[i] == DICOM_TAG_PATIENT_NAME || |
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385 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); |
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386 } |
3027 | 387 } |
388 } | |
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389 |
3027 | 390 { |
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391 std::set<DicomTag> tags; |
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392 DicomMap::GetMainDicomTags(tags, level); |
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393 |
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394 for (std::set<DicomTag>::const_iterator |
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395 tag = tags.begin(); tag != tags.end(); ++tag) |
3027 | 396 { |
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397 if (registry_.find(*tag) == registry_.end()) |
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398 { |
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399 registry_[*tag] = TagInfo(level, DicomTagType_Main); |
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400 } |
3027 | 401 } |
402 } | |
403 } | |
404 | |
405 public: | |
406 MainDicomTagsRegistry() | |
407 { | |
408 LoadTags(ResourceType_Patient); | |
409 LoadTags(ResourceType_Study); | |
410 LoadTags(ResourceType_Series); | |
411 LoadTags(ResourceType_Instance); | |
412 } | |
413 | |
414 void LookupTag(ResourceType& level, | |
415 DicomTagType& type, | |
416 const DicomTag& tag) const | |
417 { | |
418 Registry::const_iterator it = registry_.find(tag); | |
419 | |
420 if (it == registry_.end()) | |
421 { | |
422 // Default values | |
423 level = ResourceType_Instance; | |
424 type = DicomTagType_Generic; | |
425 } | |
426 else | |
427 { | |
428 level = it->second.GetLevel(); | |
429 type = it->second.GetType(); | |
430 } | |
431 } | |
432 }; | |
433 | |
434 | |
212 | 435 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 436 const std::string& uuid, |
202 | 437 ResourceType expectedType) |
0 | 438 { |
206
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439 boost::mutex::scoped_lock lock(mutex_); |
201
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440 |
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441 Transaction t(*this); |
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442 |
202 | 443 int64_t id; |
444 ResourceType type; | |
1294 | 445 if (!db_.LookupResource(id, type, uuid) || |
202 | 446 expectedType != type) |
0 | 447 { |
448 return false; | |
449 } | |
202 | 450 |
1247 | 451 db_.DeleteResource(id); |
0 | 452 |
202 | 453 if (listener_->HasRemainingLevel()) |
0 | 454 { |
202 | 455 ResourceType type = listener_->GetRemainingType(); |
456 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 457 |
458 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 459 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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460 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 461 target["RemainingAncestor"]["ID"] = uuid; |
462 } | |
463 else | |
464 { | |
465 target["RemainingAncestor"] = Json::nullValue; | |
466 } | |
467 | |
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468 t.Commit(0); |
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469 |
0 | 470 return true; |
471 } | |
472 | |
473 | |
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474 void ServerIndex::FlushThread(ServerIndex* that, |
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475 unsigned int threadSleep) |
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476 { |
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477 // By default, wait for 10 seconds before flushing |
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478 unsigned int sleep = 10; |
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479 |
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480 try |
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481 { |
744 | 482 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 483 std::string sleepString; |
1102
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484 |
1247 | 485 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 486 Toolbox::IsInteger(sleepString)) |
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487 { |
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488 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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489 } |
511
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490 } |
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491 catch (boost::bad_lexical_cast&) |
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492 { |
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493 } |
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494 |
206
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495 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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496 |
511
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497 unsigned int count = 0; |
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498 |
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499 while (!that->done_) |
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500 { |
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501 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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502 count++; |
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503 if (count < sleep) |
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504 { |
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505 continue; |
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506 } |
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507 |
2217 | 508 Logging::Flush(); |
509 | |
511
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510 boost::mutex::scoped_lock lock(that->mutex_); |
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511 |
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512 try |
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513 { |
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514 that->db_.FlushToDisk(); |
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515 } |
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516 catch (OrthancException&) |
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517 { |
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518 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)"; |
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519 } |
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520 |
511
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521 count = 0; |
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522 } |
511
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523 |
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524 LOG(INFO) << "Stopping the database flushing thread"; |
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525 } |
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526 |
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527 |
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528 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 529 const DicomMap& dicomSummary) |
530 { | |
531 try | |
532 { | |
656 | 533 const DicomValue* value; |
534 const DicomValue* value2; | |
535 | |
433 | 536 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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537 !value->IsNull() && |
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538 !value->IsBinary() && |
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539 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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540 !value2->IsNull() && |
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541 !value2->IsBinary()) |
433 | 542 { |
543 // Patch for series with temporal positions thanks to Will Ryder | |
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544 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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545 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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546 target = imagesInAcquisition * countTemporalPositions; |
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547 return (target > 0); |
433 | 548 } |
549 | |
550 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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551 !value->IsNull() && |
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552 !value->IsBinary() && |
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553 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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554 !value2->IsBinary() && |
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555 !value2->IsNull()) |
433 | 556 { |
557 // Support of Cardio-PET images | |
1737
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558 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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559 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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560 target = numberOfSlices * numberOfTimeSlices; |
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561 return (target > 0); |
433 | 562 } |
563 | |
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564 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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565 !value->IsNull() && |
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566 !value->IsBinary()) |
433 | 567 { |
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568 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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569 return (target > 0); |
433 | 570 } |
571 } | |
1737
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572 catch (OrthancException&) |
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573 { |
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574 } |
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575 catch (boost::bad_lexical_cast&) |
433 | 576 { |
577 } | |
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578 |
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579 return false; |
433 | 580 } |
581 | |
582 | |
1237 | 583 |
584 | |
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585 static bool LookupStringMetadata(std::string& result, |
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586 const std::map<MetadataType, std::string>& metadata, |
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587 MetadataType type) |
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588 { |
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589 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type); |
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590 |
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591 if (found == metadata.end()) |
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592 { |
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593 return false; |
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594 } |
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595 else |
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596 { |
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597 result = found->second; |
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598 return true; |
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599 } |
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600 } |
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601 |
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602 |
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603 static bool LookupIntegerMetadata(int64_t& result, |
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604 const std::map<MetadataType, std::string>& metadata, |
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605 MetadataType type) |
1237 | 606 { |
1238 | 607 std::string s; |
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608 if (!LookupStringMetadata(s, metadata, type)) |
1237 | 609 { |
610 return false; | |
611 } | |
612 | |
613 try | |
614 { | |
1238 | 615 result = boost::lexical_cast<int64_t>(s); |
1237 | 616 return true; |
617 } | |
618 catch (boost::bad_lexical_cast&) | |
619 { | |
620 return false; | |
621 } | |
622 } | |
623 | |
624 | |
1297 | 625 void ServerIndex::LogChange(int64_t internalId, |
626 ChangeType changeType, | |
627 ResourceType resourceType, | |
628 const std::string& publicId) | |
629 { | |
630 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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631 |
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632 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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633 { |
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634 db_.LogChange(internalId, change); |
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635 } |
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636 |
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637 assert(listener_.get() != NULL); |
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638 listener_->SignalChange(change); |
1297 | 639 } |
640 | |
1237 | 641 |
642 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
643 { | |
644 std::string oldValue; | |
645 | |
1247 | 646 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 647 { |
648 uint64_t oldNumber; | |
649 | |
650 try | |
651 { | |
652 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 653 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 654 return oldNumber + 1; |
655 } | |
656 catch (boost::bad_lexical_cast&) | |
657 { | |
658 throw OrthancException(ErrorCode_InternalError); | |
659 } | |
660 } | |
661 else | |
662 { | |
663 // Initialize the sequence at "1" | |
1247 | 664 db_.SetGlobalProperty(property, "1"); |
1237 | 665 return 1; |
666 } | |
667 } | |
668 | |
669 | |
670 | |
226
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|
671 ServerIndex::ServerIndex(ServerContext& context, |
2665
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672 IDatabaseWrapper& db, |
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673 unsigned int threadSleep) : |
511
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674 done_(false), |
1247 | 675 db_(db), |
269
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676 maximumStorageSize_(0), |
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677 maximumPatients_(0), |
3027 | 678 mainDicomTagsRegistry_(new MainDicomTagsRegistry) |
186
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679 { |
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680 listener_.reset(new Listener(context)); |
1247 | 681 db_.SetListener(*listener_); |
180
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682 |
269
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683 // Initial recycling if the parameters have changed since the last |
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684 // execution of Orthanc |
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685 StandaloneRecycling(); |
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686 |
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687 if (db.HasFlushToDisk()) |
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IDatabaseWrapper::HasFlushToDisk()
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688 { |
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689 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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690 } |
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691 |
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692 unstableResourcesMonitorThread_ = boost::thread |
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693 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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694 } |
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695 |
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696 |
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697 |
206
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698 ServerIndex::~ServerIndex() |
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699 { |
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700 if (!done_) |
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701 { |
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702 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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703 Stop(); |
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704 } |
0 | 705 } |
706 | |
707 | |
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708 |
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709 void ServerIndex::Stop() |
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710 { |
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711 if (!done_) |
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712 { |
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713 done_ = true; |
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714 |
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715 if (db_.HasFlushToDisk() && |
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716 flushThread_.joinable()) |
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717 { |
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718 flushThread_.join(); |
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719 } |
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720 |
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721 if (unstableResourcesMonitorThread_.joinable()) |
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722 { |
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723 unstableResourcesMonitorThread_.join(); |
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724 } |
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725 } |
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726 } |
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|
727 |
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|
728 |
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729 static void SetInstanceMetadata(ResourcesContent& content, |
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730 std::map<MetadataType, std::string>& instanceMetadata, |
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731 int64_t instance, |
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732 MetadataType metadata, |
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733 const std::string& value) |
2188 | 734 { |
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735 content.AddMetadata(instance, metadata, value); |
2188 | 736 instanceMetadata[metadata] = value; |
737 } | |
738 | |
739 | |
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740 void ServerIndex::SignalNewResource(ChangeType changeType, |
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741 ResourceType level, |
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742 const std::string& publicId, |
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743 int64_t internalId) |
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744 { |
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745 ServerIndexChange change(changeType, level, publicId); |
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746 db_.LogChange(internalId, change); |
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747 |
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748 assert(listener_.get() != NULL); |
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749 listener_->SignalChange(change); |
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750 } |
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|
751 |
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|
752 |
1006
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|
753 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 754 DicomInstanceToStore& instanceToStore, |
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755 const Attachments& attachments, |
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756 bool overwrite) |
0 | 757 { |
206
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758 boost::mutex::scoped_lock lock(mutex_); |
0 | 759 |
1822 | 760 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
761 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
762 | |
3090
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763 int64_t expectedInstances; |
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764 const bool hasExpectedInstances = |
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765 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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766 |
1006
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767 instanceMetadata.clear(); |
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768 |
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769 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
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770 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
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771 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
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772 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
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|
773 |
0 | 774 try |
775 { | |
278
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|
776 Transaction t(*this); |
0 | 777 |
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778 IDatabaseWrapper::CreateInstanceResult status; |
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779 int64_t instanceId; |
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780 |
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781 // Check whether this instance is already stored |
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782 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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783 hashStudy, hashSeries, hashInstance)) |
0 | 784 { |
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785 // The instance already exists |
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786 |
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787 if (overwrite) |
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788 { |
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789 // Overwrite the old instance |
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790 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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791 db_.DeleteResource(instanceId); |
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792 |
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793 // Re-create the instance, now that the old one is removed |
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794 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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795 hashStudy, hashSeries, hashInstance)) |
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796 { |
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|
797 throw OrthancException(ErrorCode_InternalError); |
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798 } |
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799 } |
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800 else |
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801 { |
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802 // Do nothing if the instance already exists and overwriting is disabled |
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803 db_.GetAllMetadata(instanceMetadata, instanceId); |
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|
804 return StoreStatus_AlreadyStored; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
805 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
806 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
807 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
808 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
809 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
810 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
811 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
812 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
813 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
814 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
815 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
816 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
817 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
818 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
819 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
820 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
821 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 822 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
823 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
825 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
826 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
827 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
828 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
829 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
830 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
831 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
832 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
833 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
834 |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
835 // Ensure there is enough room in the storage for the new instance |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
836 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
837 for (Attachments::const_iterator it = attachments.begin(); |
656 | 838 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
839 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
840 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
841 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
842 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
843 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
844 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
845 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
846 // Attach the files to the newly created instance |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
847 for (Attachments::const_iterator it = attachments.begin(); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
848 it != attachments.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
849 { |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
850 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
851 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
852 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
853 |
0 | 854 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
855 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
856 |
3086
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
857 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
858 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
859 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
860 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
861 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
862 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
863 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
864 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
865 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
866 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
867 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
868 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
869 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
870 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
871 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
872 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
873 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
874 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
875 |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
876 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
877 // Attach the user-specified metadata |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
878 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
879 for (MetadataMap::const_iterator |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
880 it = metadata.begin(); it != metadata.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
881 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
882 switch (it->first.first) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
883 { |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
884 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
885 content.AddMetadata(status.patientId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
886 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
887 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
888 case ResourceType_Study: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
889 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
890 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
891 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
892 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
893 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
894 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
895 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
896 case ResourceType_Instance: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
897 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
898 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
899 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
900 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
901 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
902 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
903 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
904 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
905 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
906 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
907 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
908 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
909 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
910 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
911 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
912 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
913 if (status.isNewSeries_ && |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
914 hasExpectedInstances) |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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3087
diff
changeset
|
915 { |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
916 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
917 boost::lexical_cast<std::string>(expectedInstances)); |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
918 } |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
919 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
920 |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
921 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
922 // reflecting these additions into the input metadata map |
74e3e48aa9bd
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parents:
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|
923 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
3083
diff
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|
924 MetadataType_Instance_ReceptionDate, now); |
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parents:
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diff
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|
925 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
926 instanceToStore.GetOrigin().GetRemoteAetC()); |
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|
927 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
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parents:
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diff
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|
928 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
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parents:
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diff
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|
929 |
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diff
changeset
|
930 |
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diff
changeset
|
931 { |
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diff
changeset
|
932 std::string s; |
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diff
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|
933 |
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|
934 if (instanceToStore.LookupTransferSyntax(s)) |
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diff
changeset
|
935 { |
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diff
changeset
|
936 // New in Orthanc 1.2.0 |
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|
937 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
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|
938 MetadataType_Instance_TransferSyntax, s); |
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diff
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|
939 } |
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changeset
|
940 |
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3083
diff
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|
941 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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diff
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|
942 { |
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diff
changeset
|
943 // New in Orthanc 1.4.0 |
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|
944 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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diff
changeset
|
945 MetadataType_Instance_RemoteIp, s); |
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diff
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|
946 } |
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changeset
|
947 |
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parents:
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|
948 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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diff
changeset
|
949 { |
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parents:
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diff
changeset
|
950 // New in Orthanc 1.4.0 |
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changeset
|
951 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
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|
952 MetadataType_Instance_CalledAet, s); |
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|
953 } |
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|
954 |
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diff
changeset
|
955 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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parents:
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diff
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|
956 { |
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diff
changeset
|
957 // New in Orthanc 1.4.0 |
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changeset
|
958 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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|
959 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
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|
960 } |
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parents:
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diff
changeset
|
961 } |
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changeset
|
962 |
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|
963 |
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|
964 const DicomValue* value; |
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|
965 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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parents:
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|
966 !value->IsNull() && |
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parents:
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|
967 !value->IsBinary()) |
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diff
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|
968 { |
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changeset
|
969 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
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|
970 MetadataType_Instance_SopClassUid, value->GetContent()); |
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parents:
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|
971 } |
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diff
changeset
|
972 |
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changeset
|
973 |
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changeset
|
974 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
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grouping the setting of metadata
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|
975 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
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diff
changeset
|
976 { |
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parents:
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diff
changeset
|
977 if (!value->IsNull() && |
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changeset
|
978 !value->IsBinary()) |
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diff
changeset
|
979 { |
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changeset
|
980 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
changeset
|
981 MetadataType_Instance_IndexInSeries, value->GetContent()); |
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parents:
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diff
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|
982 } |
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parents:
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diff
changeset
|
983 } |
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diff
changeset
|
984 |
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diff
changeset
|
985 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
3082
diff
changeset
|
986 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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3075
diff
changeset
|
987 } |
3086
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diff
changeset
|
988 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
989 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
990 // Check whether the series of this new instance is now completed |
3187
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diff
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|
991 int64_t expectedNumberOfInstances; |
4bbadcd03966
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diff
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|
992 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary)) |
205
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logging of completed series
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|
993 { |
3187
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diff
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|
994 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_, expectedNumberOfInstances); |
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|
995 if (seriesStatus == SeriesStatus_Complete) |
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|
996 { |
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diff
changeset
|
997 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
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|
998 } |
205
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|
999 } |
3087 | 1000 |
205
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logging of completed series
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1001 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1002 // Mark the parent resources of this instance as unstable |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
1003 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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changeset
|
1004 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1005 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1006 |
278
771f12042be9
more efficient determination of storage size for recycling
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diff
changeset
|
1007 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
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|
1008 |
0 | 1009 return StoreStatus_Success; |
1010 } | |
62 | 1011 catch (OrthancException& e) |
0 | 1012 { |
1247 | 1013 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 1014 } |
1015 | |
1016 return StoreStatus_Failure; | |
1017 } | |
1018 | |
1019 | |
3174
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primitives to collect metrics in Orthanc
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diff
changeset
|
1020 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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|
1021 /* out */ uint64_t& uncompressedSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1022 /* out */ uint64_t& countPatients, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
3105
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changeset
|
1023 /* out */ uint64_t& countStudies, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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|
1024 /* out */ uint64_t& countSeries, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1025 /* out */ uint64_t& countInstances) |
0 | 1026 { |
206
4453a010d0db
flush to disk thread
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diff
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|
1027 boost::mutex::scoped_lock lock(mutex_); |
3174
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primitives to collect metrics in Orthanc
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changeset
|
1028 diskSize = db_.GetTotalCompressedSize(); |
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primitives to collect metrics in Orthanc
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changeset
|
1029 uncompressedSize = db_.GetTotalUncompressedSize(); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1030 countPatients = db_.GetResourceCount(ResourceType_Patient); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1031 countStudies = db_.GetResourceCount(ResourceType_Study); |
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primitives to collect metrics in Orthanc
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changeset
|
1032 countSeries = db_.GetResourceCount(ResourceType_Series); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1033 countInstances = db_.GetResourceCount(ResourceType_Instance); |
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|
1034 } |
187
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|
1035 |
3090
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diff
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|
1036 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
1037 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
1038 int64_t expectedNumberOfInstances) |
199 | 1039 { |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1040 std::list<std::string> values; |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1041 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 1042 |
1238 | 1043 std::set<int64_t> instances; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1044 |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1045 for (std::list<std::string>::const_iterator |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1046 it = values.begin(); it != values.end(); ++it) |
199 | 1047 { |
1238 | 1048 int64_t index; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1049 |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1050 try |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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|
1051 { |
476cba12c2b0
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1052 index = boost::lexical_cast<int64_t>(*it); |
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1053 } |
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1054 catch (boost::bad_lexical_cast&) |
199 | 1055 { |
1056 return SeriesStatus_Unknown; | |
1057 } | |
3091
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1058 |
3090
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1059 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1060 { |
1061 // Out-of-range instance index | |
1062 return SeriesStatus_Inconsistent; | |
1063 } | |
1064 | |
1065 if (instances.find(index) != instances.end()) | |
1066 { | |
1067 // Twice the same instance index | |
1068 return SeriesStatus_Inconsistent; | |
1069 } | |
1070 | |
1071 instances.insert(index); | |
1072 } | |
1073 | |
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1074 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1075 { |
1076 return SeriesStatus_Complete; | |
1077 } | |
1078 else | |
1079 { | |
1080 return SeriesStatus_Missing; | |
1081 } | |
1082 } | |
1083 | |
1084 | |
202 | 1085 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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1086 int64_t resourceId, |
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1087 ResourceType resourceType) |
198
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1088 { |
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1089 DicomMap tags; |
1247 | 1090 db_.GetMainDicomTags(tags, resourceId); |
1676
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1091 |
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1092 if (resourceType == ResourceType_Study) |
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1093 { |
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1094 DicomMap t1, t2; |
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1095 tags.ExtractStudyInformation(t1); |
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|
1096 tags.ExtractPatientInformation(t2); |
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|
1097 |
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1098 target["MainDicomTags"] = Json::objectValue; |
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|
1099 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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1100 |
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1101 target["PatientMainDicomTags"] = Json::objectValue; |
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|
1102 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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1103 } |
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|
1104 else |
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|
1105 { |
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|
1106 target["MainDicomTags"] = Json::objectValue; |
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|
1107 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1108 } |
198
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1109 } |
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1110 |
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1111 |
198
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1112 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1113 const std::string& publicId, |
1114 ResourceType expectedType) | |
198
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1115 { |
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1116 result = Json::objectValue; |
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1117 |
206
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1118 boost::mutex::scoped_lock lock(mutex_); |
199 | 1119 |
198
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1120 // Lookup for the requested resource |
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1121 int64_t id; |
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1122 ResourceType type; |
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1123 std::string parent; |
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1124 if (!db_.LookupResourceAndParent(id, type, parent, publicId) || |
199 | 1125 type != expectedType) |
198
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1126 { |
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1127 return false; |
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1128 } |
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1129 |
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1130 // Set information about the parent resource (if it exists) |
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1131 if (type == ResourceType_Patient) |
198
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1132 { |
3187
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1133 if (!parent.empty()) |
198
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1134 { |
3187
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|
1135 throw OrthancException(ErrorCode_DatabasePlugin); |
198
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1136 } |
3187
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1137 } |
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|
1138 else |
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|
1139 { |
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|
1140 if (parent.empty()) |
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|
1141 { |
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|
1142 throw OrthancException(ErrorCode_DatabasePlugin); |
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|
1143 } |
198
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1144 |
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1145 switch (type) |
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1146 { |
269
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|
1147 case ResourceType_Study: |
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1148 result["ParentPatient"] = parent; |
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1149 break; |
198
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1150 |
269
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|
1151 case ResourceType_Series: |
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1152 result["ParentStudy"] = parent; |
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|
1153 break; |
198
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1154 |
269
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1155 case ResourceType_Instance: |
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1156 result["ParentSeries"] = parent; |
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|
1157 break; |
198
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1158 |
269
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1159 default: |
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1160 throw OrthancException(ErrorCode_InternalError); |
198
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1161 } |
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1162 } |
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1163 |
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1164 // List the children resources |
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1165 std::list<std::string> children; |
1247 | 1166 db_.GetChildrenPublicId(children, id); |
198
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1167 |
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1168 if (type != ResourceType_Instance) |
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1169 { |
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1170 Json::Value c = Json::arrayValue; |
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1171 |
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1172 for (std::list<std::string>::const_iterator |
656 | 1173 it = children.begin(); it != children.end(); ++it) |
198
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1174 { |
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1175 c.append(*it); |
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1176 } |
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1177 |
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1178 switch (type) |
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1179 { |
269
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1180 case ResourceType_Patient: |
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1181 result["Studies"] = c; |
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1182 break; |
198
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1183 |
269
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|
1184 case ResourceType_Study: |
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1185 result["Series"] = c; |
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|
1186 break; |
198
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1187 |
269
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|
1188 case ResourceType_Series: |
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1189 result["Instances"] = c; |
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1190 break; |
198
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1191 |
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1192 default: |
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1193 throw OrthancException(ErrorCode_InternalError); |
198
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1194 } |
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1195 } |
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1196 |
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|
1197 // Extract the metadata |
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refactoring retrieval of metadata from database
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3174
diff
changeset
|
1198 std::map<MetadataType, std::string> metadata; |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1199 db_.GetAllMetadata(metadata, id); |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1200 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1201 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1202 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1203 { |
269
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diff
changeset
|
1204 case ResourceType_Patient: |
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parents:
268
diff
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|
1205 result["Type"] = "Patient"; |
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parents:
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diff
changeset
|
1206 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
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|
1207 |
269
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diff
changeset
|
1208 case ResourceType_Study: |
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diff
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|
1209 result["Type"] = "Study"; |
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268
diff
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|
1210 break; |
199 | 1211 |
269
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268
diff
changeset
|
1212 case ResourceType_Series: |
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diff
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|
1213 { |
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diff
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|
1214 result["Type"] = "Series"; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
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|
1215 |
1238 | 1216 int64_t i; |
3187
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refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1217 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1218 { |
1238 | 1219 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1220 result["Status"] = EnumerationToString(GetSeriesStatus(id, i)); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1221 } |
269
f6fdf5abe751
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parents:
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diff
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|
1222 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1223 { |
269
f6fdf5abe751
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268
diff
changeset
|
1224 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1225 result["Status"] = EnumerationToString(SeriesStatus_Unknown); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1226 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1227 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1228 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1229 } |
9c58b2b03cf0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1230 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1231 case ResourceType_Instance: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1232 { |
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268
diff
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|
1233 result["Type"] = "Instance"; |
f6fdf5abe751
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268
diff
changeset
|
1234 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1235 FileInfo attachment; |
1247 | 1236 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1237 { |
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diff
changeset
|
1238 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1239 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1240 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1241 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1242 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1243 |
1238 | 1244 int64_t i; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1245 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries)) |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1246 { |
1238 | 1247 result["IndexInSeries"] = static_cast<int>(i); |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1248 } |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1249 else |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1250 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1251 result["IndexInSeries"] = Json::nullValue; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1252 } |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1253 |
269
f6fdf5abe751
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268
diff
changeset
|
1254 break; |
f6fdf5abe751
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parents:
268
diff
changeset
|
1255 } |
f6fdf5abe751
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parents:
268
diff
changeset
|
1256 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1257 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1258 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1259 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1260 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1261 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1262 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1263 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1264 |
315 | 1265 std::string tmp; |
1266 | |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1267 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom)) |
1236 | 1268 { |
315 | 1269 result["AnonymizedFrom"] = tmp; |
1236 | 1270 } |
315 | 1271 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1272 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom)) |
1236 | 1273 { |
315 | 1274 result["ModifiedFrom"] = tmp; |
1236 | 1275 } |
315 | 1276 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1277 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1278 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1279 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1280 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1281 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1282 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1283 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate)) |
1236 | 1284 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1285 result["LastUpdate"] = tmp; |
1236 | 1286 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1287 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1288 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1289 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1290 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1291 |
0 | 1292 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1293 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1294 const std::string& instanceUuid, |
233 | 1295 FileContentType contentType) |
0 | 1296 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1297 boost::mutex::scoped_lock lock(mutex_); |
0 | 1298 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1299 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1300 ResourceType type; |
1294 | 1301 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1302 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1303 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1304 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1305 |
1247 | 1306 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
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231
diff
changeset
|
1307 { |
233 | 1308 assert(attachment.GetContentType() == contentType); |
232
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231
diff
changeset
|
1309 return true; |
5368bbe813cf
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parents:
231
diff
changeset
|
1310 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1311 else |
5368bbe813cf
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parents:
231
diff
changeset
|
1312 { |
5368bbe813cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1313 return false; |
5368bbe813cf
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231
diff
changeset
|
1314 } |
192
c56dc32266e0
refactoring getfile
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191
diff
changeset
|
1315 } |
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191
diff
changeset
|
1316 |
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191
diff
changeset
|
1317 |
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parents:
191
diff
changeset
|
1318 |
1354 | 1319 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1320 ResourceType resourceType) |
0 | 1321 { |
1357 | 1322 boost::mutex::scoped_lock lock(mutex_); |
1323 db_.GetAllPublicIds(target, resourceType); | |
0 | 1324 } |
1325 | |
1326 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1327 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1328 ResourceType resourceType, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1329 size_t since, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1330 size_t limit) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1331 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1332 if (limit == 0) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1333 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1334 target.clear(); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1335 return; |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1336 } |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1337 |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1338 boost::mutex::scoped_lock lock(mutex_); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1339 db_.GetAllPublicIds(target, resourceType, since, limit); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1340 } |
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1341 |
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1342 |
1244 | 1343 template <typename T> |
1344 static void FormatLog(Json::Value& target, | |
1345 const std::list<T>& log, | |
1346 const std::string& name, | |
1347 bool done, | |
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1348 int64_t since, |
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1349 bool hasLast, |
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1350 int64_t last) |
1240 | 1351 { |
1352 Json::Value items = Json::arrayValue; | |
1244 | 1353 for (typename std::list<T>::const_iterator |
1304 | 1354 it = log.begin(); it != log.end(); ++it) |
1240 | 1355 { |
1356 Json::Value item; | |
1357 it->Format(item); | |
1358 items.append(item); | |
1359 } | |
1360 | |
1361 target = Json::objectValue; | |
1244 | 1362 target[name] = items; |
1240 | 1363 target["Done"] = done; |
1364 | |
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1365 if (!hasLast) |
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1366 { |
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1367 // Best-effort guess of the last index in the sequence |
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1368 if (log.empty()) |
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1369 { |
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1370 last = since; |
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1371 } |
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1372 else |
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1373 { |
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1374 last = log.back().GetSeq(); |
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1375 } |
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1376 } |
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1377 |
1240 | 1378 target["Last"] = static_cast<int>(last); |
1379 } | |
1380 | |
1381 | |
1247 | 1382 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1383 int64_t since, |
0 | 1384 unsigned int maxResults) |
1385 { | |
1240 | 1386 std::list<ServerIndexChange> changes; |
1387 bool done; | |
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1388 bool hasLast = false; |
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1389 int64_t last = 0; |
1240 | 1390 |
1391 { | |
1392 boost::mutex::scoped_lock lock(mutex_); | |
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1393 |
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1394 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1395 // "GetLastChange()" involves calls to "GetPublicId()" |
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1396 Transaction transaction(*this); |
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1397 |
1247 | 1398 db_.GetChanges(changes, done, since, maxResults); |
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1399 if (changes.empty()) |
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1400 { |
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1401 last = db_.GetLastChangeIndex(); |
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1402 hasLast = true; |
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1403 } |
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1404 |
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1405 transaction.Commit(0); |
1240 | 1406 } |
1407 | |
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1408 FormatLog(target, changes, "Changes", done, since, hasLast, last); |
237
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1409 } |
0 | 1410 |
1240 | 1411 |
1247 | 1412 void ServerIndex::GetLastChange(Json::Value& target) |
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1413 { |
1240 | 1414 std::list<ServerIndexChange> changes; |
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1415 bool hasLast = false; |
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1416 int64_t last = 0; |
1240 | 1417 |
1418 { | |
1419 boost::mutex::scoped_lock lock(mutex_); | |
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1420 |
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1421 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1422 // "GetLastChange()" involves calls to "GetPublicId()" |
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1423 Transaction transaction(*this); |
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1424 |
1247 | 1425 db_.GetLastChange(changes); |
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1426 if (changes.empty()) |
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1427 { |
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1428 last = db_.GetLastChangeIndex(); |
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1429 hasLast = true; |
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1430 } |
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1431 |
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1432 transaction.Commit(0); |
1240 | 1433 } |
1434 | |
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1435 FormatLog(target, changes, "Changes", true, 0, hasLast, last); |
0 | 1436 } |
231 | 1437 |
1240 | 1438 |
231 | 1439 void ServerIndex::LogExportedResource(const std::string& publicId, |
1440 const std::string& remoteModality) | |
1441 { | |
1442 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1443 Transaction transaction(*this); |
231 | 1444 |
1445 int64_t id; | |
1446 ResourceType type; | |
1294 | 1447 if (!db_.LookupResource(id, type, publicId)) |
231 | 1448 { |
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1449 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1450 } |
1451 | |
1452 std::string patientId; | |
1453 std::string studyInstanceUid; | |
1454 std::string seriesInstanceUid; | |
1455 std::string sopInstanceUid; | |
1456 | |
1457 int64_t currentId = id; | |
1458 ResourceType currentType = type; | |
1459 | |
1460 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1461 bool done = false; | |
1462 while (!done) | |
1463 { | |
1464 DicomMap map; | |
1247 | 1465 db_.GetMainDicomTags(map, currentId); |
231 | 1466 |
1467 switch (currentType) | |
1468 { | |
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1469 case ResourceType_Patient: |
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1470 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1471 { |
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1472 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1473 } |
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1474 done = true; |
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1475 break; |
231 | 1476 |
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1477 case ResourceType_Study: |
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1478 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1479 { |
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1480 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1481 } |
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1482 currentType = ResourceType_Patient; |
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1483 break; |
231 | 1484 |
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1485 case ResourceType_Series: |
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1486 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1487 { |
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1488 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1489 } |
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1490 currentType = ResourceType_Study; |
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1491 break; |
231 | 1492 |
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1493 case ResourceType_Instance: |
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1494 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1495 { |
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1496 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1497 } |
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1498 currentType = ResourceType_Series; |
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1499 break; |
231 | 1500 |
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1501 default: |
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1502 throw OrthancException(ErrorCode_InternalError); |
231 | 1503 } |
1504 | |
1505 // If we have not reached the Patient level, find the parent of | |
1506 // the current resource | |
1507 if (!done) | |
1508 { | |
1247 | 1509 bool ok = db_.LookupParent(currentId, currentId); |
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1510 assert(ok); |
231 | 1511 } |
1512 } | |
1513 | |
1246 | 1514 ExportedResource resource(-1, |
1515 type, | |
1516 publicId, | |
1517 remoteModality, | |
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1518 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1519 patientId, |
1520 studyInstanceUid, | |
1521 seriesInstanceUid, | |
1522 sopInstanceUid); | |
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1523 |
1247 | 1524 db_.LogExportedResource(resource); |
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|
1525 transaction.Commit(0); |
231 | 1526 } |
1527 | |
1528 | |
1247 | 1529 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1530 int64_t since, |
1531 unsigned int maxResults) | |
1532 { | |
1244 | 1533 std::list<ExportedResource> exported; |
1534 bool done; | |
1535 | |
1536 { | |
1537 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1538 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1539 } |
1540 | |
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1541 FormatLog(target, exported, "Exports", done, since, false, -1); |
231 | 1542 } |
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1543 |
1244 | 1544 |
1247 | 1545 void ServerIndex::GetLastExportedResource(Json::Value& target) |
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1546 { |
1244 | 1547 std::list<ExportedResource> exported; |
1548 | |
1549 { | |
1550 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1551 db_.GetLastExportedResource(exported); |
1244 | 1552 } |
1553 | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
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|
1554 FormatLog(target, exported, "Exports", true, 0, false, -1); |
237
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diff
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|
1555 } |
268
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|
1556 |
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|
1557 |
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|
1558 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1559 { |
269
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1560 if (maximumStorageSize_ != 0) |
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|
1561 { |
3020
d207f6ac1f86
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3019
diff
changeset
|
1562 assert(maximumStorageSize_ >= instanceSize); |
d207f6ac1f86
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1563 |
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|
1564 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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|
1565 { |
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|
1566 return true; |
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|
1567 } |
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|
1568 } |
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|
1569 |
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1570 if (maximumPatients_ != 0) |
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|
1571 { |
1247 | 1572 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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|
1573 if (patientCount > maximumPatients_) |
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|
1574 { |
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1575 return true; |
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|
1576 } |
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|
1577 } |
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|
1578 |
268
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|
1579 return false; |
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|
1580 } |
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|
1581 |
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|
1582 |
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|
1583 void ServerIndex::Recycle(uint64_t instanceSize, |
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|
1584 const std::string& newPatientId) |
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|
1585 { |
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|
1586 if (!IsRecyclingNeeded(instanceSize)) |
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|
1587 { |
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|
1588 return; |
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|
1589 } |
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|
1590 |
269
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1591 // Check whether other DICOM instances from this patient are |
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1592 // already stored |
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|
1593 int64_t patientToAvoid; |
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|
1594 ResourceType type; |
1294 | 1595 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1596 |
269
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1597 if (hasPatientToAvoid && type != ResourceType_Patient) |
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|
1598 { |
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1599 throw OrthancException(ErrorCode_InternalError); |
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|
1600 } |
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|
1601 |
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|
1602 // Iteratively select patient to remove until there is enough |
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1603 // space in the DICOM store |
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|
1604 int64_t patientToRecycle; |
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1605 while (true) |
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|
1606 { |
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1607 // If other instances of this patient are already in the store, |
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|
1608 // we must avoid to recycle them |
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|
1609 bool ok = hasPatientToAvoid ? |
1247 | 1610 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1611 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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|
1612 |
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1613 if (!ok) |
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|
1614 { |
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|
1615 throw OrthancException(ErrorCode_FullStorage); |
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|
1616 } |
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268
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|
1617 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1310
diff
changeset
|
1618 VLOG(1) << "Recycling one patient"; |
1247 | 1619 db_.DeleteResource(patientToRecycle); |
269
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|
1620 |
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|
1621 if (!IsRecyclingNeeded(instanceSize)) |
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268
diff
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|
1622 { |
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|
1623 // OK, we're done |
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diff
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|
1624 break; |
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268
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|
1625 } |
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|
1626 } |
268
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|
1627 } |
269
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|
1628 |
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|
1629 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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|
1630 { |
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|
1631 boost::mutex::scoped_lock lock(mutex_); |
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268
diff
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|
1632 maximumPatients_ = count; |
270
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diff
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|
1633 |
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|
1634 if (count == 0) |
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diff
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|
1635 { |
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269
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|
1636 LOG(WARNING) << "No limit on the number of stored patients"; |
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269
diff
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|
1637 } |
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269
diff
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|
1638 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
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|
1639 { |
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|
1640 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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269
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|
1641 } |
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269
diff
changeset
|
1642 |
269
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|
1643 StandaloneRecycling(); |
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|
1644 } |
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|
1645 |
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268
diff
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|
1646 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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268
diff
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|
1647 { |
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|
1648 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
1649 maximumStorageSize_ = size; |
270
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diff
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|
1650 |
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diff
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|
1651 if (size == 0) |
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diff
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|
1652 { |
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changeset
|
1653 LOG(WARNING) << "No limit on the size of the storage area"; |
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|
1654 } |
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diff
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|
1655 else |
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diff
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|
1656 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1657 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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|
1658 } |
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changeset
|
1659 |
269
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|
1660 StandaloneRecycling(); |
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|
1661 } |
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|
1662 |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2726
diff
changeset
|
1663 |
272
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diff
changeset
|
1664 void ServerIndex::StandaloneRecycling() |
269
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|
1665 { |
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|
1666 // WARNING: No mutex here, do not include this as a public method |
278
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changeset
|
1667 Transaction t(*this); |
269
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|
1668 Recycle(0, ""); |
278
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changeset
|
1669 t.Commit(0); |
269
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|
1670 } |
272
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diff
changeset
|
1671 |
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diff
changeset
|
1672 |
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changeset
|
1673 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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diff
changeset
|
1674 { |
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diff
changeset
|
1675 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
1676 |
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changeset
|
1677 // Lookup for the requested resource |
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diff
changeset
|
1678 int64_t id; |
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1679 ResourceType type; |
1294 | 1680 if (!db_.LookupResource(id, type, publicId) || |
272
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1681 type != ResourceType_Patient) |
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1682 { |
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1683 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1684 } |
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1685 |
1247 | 1686 return db_.IsProtectedPatient(id); |
272
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1687 } |
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1688 |
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1689 |
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1690 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1691 bool isProtected) |
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1692 { |
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1693 boost::mutex::scoped_lock lock(mutex_); |
1310
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1694 Transaction transaction(*this); |
272
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1695 |
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1696 // Lookup for the requested resource |
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1697 int64_t id; |
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1698 ResourceType type; |
1294 | 1699 if (!db_.LookupResource(id, type, publicId) || |
272
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1700 type != ResourceType_Patient) |
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1701 { |
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1702 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1703 } |
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1704 |
1247 | 1705 db_.SetProtectedPatient(id, isProtected); |
1310
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1706 transaction.Commit(0); |
272
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1707 |
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1708 if (isProtected) |
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1709 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1710 else |
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1711 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1712 } |
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1713 |
304 | 1714 |
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1715 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1716 const std::string& publicId) |
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1717 { |
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1718 result.clear(); |
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1719 |
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1720 boost::mutex::scoped_lock lock(mutex_); |
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1721 |
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1722 ResourceType type; |
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1723 int64_t resource; |
1294 | 1724 if (!db_.LookupResource(resource, type, publicId)) |
714
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1725 { |
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1726 throw OrthancException(ErrorCode_UnknownResource); |
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1727 } |
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1728 |
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1729 if (type == ResourceType_Instance) |
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1730 { |
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1731 // An instance cannot have a child |
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1732 throw OrthancException(ErrorCode_BadParameterType); |
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1733 } |
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1734 |
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1735 std::list<int64_t> tmp; |
1247 | 1736 db_.GetChildrenInternalId(tmp, resource); |
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1737 |
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1738 for (std::list<int64_t>::const_iterator |
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1739 it = tmp.begin(); it != tmp.end(); ++it) |
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1740 { |
1247 | 1741 result.push_back(db_.GetPublicId(*it)); |
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1742 } |
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1743 } |
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1744 |
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1745 |
304 | 1746 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1747 const std::string& publicId) | |
1748 { | |
1749 result.clear(); | |
1750 | |
1751 boost::mutex::scoped_lock lock(mutex_); | |
1752 | |
1753 ResourceType type; | |
1754 int64_t top; | |
1294 | 1755 if (!db_.LookupResource(top, type, publicId)) |
304 | 1756 { |
1757 throw OrthancException(ErrorCode_UnknownResource); | |
1758 } | |
1759 | |
1760 if (type == ResourceType_Instance) | |
1761 { | |
1762 // The resource is already an instance: Do not go down the hierarchy | |
1763 result.push_back(publicId); | |
1764 return; | |
1765 } | |
1766 | |
1767 std::stack<int64_t> toExplore; | |
1768 toExplore.push(top); | |
1769 | |
1770 std::list<int64_t> tmp; | |
1771 | |
1772 while (!toExplore.empty()) | |
1773 { | |
1774 // Get the internal ID of the current resource | |
1775 int64_t resource = toExplore.top(); | |
1776 toExplore.pop(); | |
1777 | |
1247 | 1778 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1779 { |
1247 | 1780 result.push_back(db_.GetPublicId(resource)); |
304 | 1781 } |
1782 else | |
1783 { | |
1784 // Tag all the children of this resource as to be explored | |
1247 | 1785 db_.GetChildrenInternalId(tmp, resource); |
304 | 1786 for (std::list<int64_t>::const_iterator |
656 | 1787 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1788 { |
1789 toExplore.push(*it); | |
1790 } | |
1791 } | |
1792 } | |
1793 } | |
1794 | |
306
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1795 |
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1796 void ServerIndex::SetMetadata(const std::string& publicId, |
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1797 MetadataType type, |
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1798 const std::string& value) |
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1799 { |
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1800 boost::mutex::scoped_lock lock(mutex_); |
1773
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1801 Transaction t(*this); |
306
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1802 |
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1803 ResourceType rtype; |
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1804 int64_t id; |
1294 | 1805 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1806 { |
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1807 throw OrthancException(ErrorCode_UnknownResource); |
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1808 } |
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1809 |
1247 | 1810 db_.SetMetadata(id, type, value); |
1773
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1811 |
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1812 if (IsUserMetadata(type)) |
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1813 { |
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1814 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1815 } |
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1816 |
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1817 t.Commit(0); |
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1818 } |
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1819 |
438 | 1820 |
1821 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1822 MetadataType type) | |
1823 { | |
1824 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1825 Transaction t(*this); |
438 | 1826 |
1827 ResourceType rtype; | |
1828 int64_t id; | |
1294 | 1829 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1830 { |
1831 throw OrthancException(ErrorCode_UnknownResource); | |
1832 } | |
1833 | |
1247 | 1834 db_.DeleteMetadata(id, type); |
1773
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1835 |
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1836 if (IsUserMetadata(type)) |
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1837 { |
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1838 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1839 } |
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1840 |
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1841 t.Commit(0); |
438 | 1842 } |
1843 | |
1844 | |
306
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1845 bool ServerIndex::LookupMetadata(std::string& target, |
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1846 const std::string& publicId, |
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1847 MetadataType type) |
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1848 { |
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1849 boost::mutex::scoped_lock lock(mutex_); |
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1850 |
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1851 ResourceType rtype; |
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1852 int64_t id; |
1294 | 1853 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1854 { |
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1855 throw OrthancException(ErrorCode_UnknownResource); |
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1856 } |
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1857 |
1247 | 1858 return db_.LookupMetadata(target, id, type); |
306
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1859 } |
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1860 |
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1861 |
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1862 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target, |
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1863 const std::string& publicId) |
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1864 { |
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1865 boost::mutex::scoped_lock lock(mutex_); |
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1866 |
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1867 ResourceType type; |
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1868 int64_t id; |
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1869 if (!db_.LookupResource(id, type, publicId)) |
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1870 { |
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1871 throw OrthancException(ErrorCode_UnknownResource); |
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1872 } |
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1873 |
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1874 return db_.GetAllMetadata(target, id); |
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1875 } |
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1876 |
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1877 |
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1878 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1879 const std::string& publicId, |
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1880 ResourceType expectedType) |
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1881 { |
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1882 boost::mutex::scoped_lock lock(mutex_); |
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1883 |
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1884 ResourceType type; |
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1885 int64_t id; |
1294 | 1886 if (!db_.LookupResource(id, type, publicId) || |
697
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1887 expectedType != type) |
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1888 { |
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1889 throw OrthancException(ErrorCode_UnknownResource); |
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1890 } |
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1891 |
1247 | 1892 db_.ListAvailableAttachments(target, id); |
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1893 } |
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1894 |
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1895 |
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1896 bool ServerIndex::LookupParent(std::string& target, |
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1897 const std::string& publicId) |
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1898 { |
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1899 boost::mutex::scoped_lock lock(mutex_); |
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1900 |
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1901 ResourceType type; |
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1902 int64_t id; |
1294 | 1903 if (!db_.LookupResource(id, type, publicId)) |
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1904 { |
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1905 throw OrthancException(ErrorCode_UnknownResource); |
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1906 } |
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1907 |
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1908 int64_t parentId; |
1247 | 1909 if (db_.LookupParent(parentId, id)) |
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1910 { |
1247 | 1911 target = db_.GetPublicId(parentId); |
306
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1912 return true; |
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1913 } |
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1914 else |
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1915 { |
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1916 return false; |
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1917 } |
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1918 } |
310 | 1919 |
1920 | |
1921 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1922 { | |
1923 boost::mutex::scoped_lock lock(mutex_); | |
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1924 Transaction transaction(*this); |
311 | 1925 |
1237 | 1926 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1927 transaction.Commit(0); |
311 | 1928 |
1929 return seq; | |
310 | 1930 } |
315 | 1931 |
1932 | |
1933 | |
1934 void ServerIndex::LogChange(ChangeType changeType, | |
1935 const std::string& publicId) | |
1936 { | |
1937 boost::mutex::scoped_lock lock(mutex_); | |
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1938 Transaction transaction(*this); |
315 | 1939 |
1940 int64_t id; | |
1941 ResourceType type; | |
1294 | 1942 if (!db_.LookupResource(id, type, publicId)) |
315 | 1943 { |
1944 throw OrthancException(ErrorCode_UnknownResource); | |
1945 } | |
1946 | |
1237 | 1947 LogChange(id, changeType, type, publicId); |
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1948 transaction.Commit(0); |
315 | 1949 } |
413
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1950 |
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1951 |
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1952 void ServerIndex::DeleteChanges() |
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1953 { |
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1954 boost::mutex::scoped_lock lock(mutex_); |
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1955 |
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1956 Transaction transaction(*this); |
1286 | 1957 db_.ClearChanges(); |
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1958 transaction.Commit(0); |
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1959 } |
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1960 |
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1961 void ServerIndex::DeleteExportedResources() |
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1962 { |
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1963 boost::mutex::scoped_lock lock(mutex_); |
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1964 |
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1965 Transaction transaction(*this); |
1286 | 1966 db_.ClearExportedResources(); |
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1967 transaction.Commit(0); |
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1968 } |
440
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1969 |
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1970 |
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1971 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type, |
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1972 /* out */ uint64_t& diskSize, |
646 | 1973 /* out */ uint64_t& uncompressedSize, |
1974 /* out */ unsigned int& countStudies, | |
1975 /* out */ unsigned int& countSeries, | |
1976 /* out */ unsigned int& countInstances, | |
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1977 /* out */ uint64_t& dicomDiskSize, |
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1978 /* out */ uint64_t& dicomUncompressedSize, |
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1979 const std::string& publicId) |
440
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1980 { |
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1981 boost::mutex::scoped_lock lock(mutex_); |
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1982 |
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1983 int64_t top; |
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1984 if (!db_.LookupResource(top, type, publicId)) |
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1985 { |
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1986 throw OrthancException(ErrorCode_UnknownResource); |
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1987 } |
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1988 |
646 | 1989 std::stack<int64_t> toExplore; |
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1990 toExplore.push(top); |
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1991 |
646 | 1992 countInstances = 0; |
1993 countSeries = 0; | |
1994 countStudies = 0; | |
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1995 diskSize = 0; |
646 | 1996 uncompressedSize = 0; |
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1997 dicomDiskSize = 0; |
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1998 dicomUncompressedSize = 0; |
440
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1999 |
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2000 while (!toExplore.empty()) |
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2001 { |
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2002 // Get the internal ID of the current resource |
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2003 int64_t resource = toExplore.top(); |
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2004 toExplore.pop(); |
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2005 |
1247 | 2006 ResourceType thisType = db_.GetResourceType(resource); |
440
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2007 |
702
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2008 std::list<FileContentType> f; |
1247 | 2009 db_.ListAvailableAttachments(f, resource); |
702
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2010 |
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2011 for (std::list<FileContentType>::const_iterator |
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2012 it = f.begin(); it != f.end(); ++it) |
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2013 { |
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2014 FileInfo attachment; |
1247 | 2015 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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2016 { |
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2017 if (attachment.GetContentType() == FileContentType_Dicom) |
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2018 { |
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|
2019 dicomDiskSize += attachment.GetCompressedSize(); |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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|
2020 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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|
2021 } |
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|
2022 |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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|
2023 diskSize += attachment.GetCompressedSize(); |
702
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|
2024 uncompressedSize += attachment.GetUncompressedSize(); |
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|
2025 } |
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|
2026 } |
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|
2027 |
440
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diff
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|
2028 if (thisType == ResourceType_Instance) |
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diff
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|
2029 { |
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diff
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|
2030 countInstances++; |
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diff
changeset
|
2031 } |
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diff
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|
2032 else |
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diff
changeset
|
2033 { |
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diff
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|
2034 switch (thisType) |
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diff
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|
2035 { |
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diff
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|
2036 case ResourceType_Study: |
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diff
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|
2037 countStudies++; |
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diff
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|
2038 break; |
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diff
changeset
|
2039 |
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diff
changeset
|
2040 case ResourceType_Series: |
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diff
changeset
|
2041 countSeries++; |
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diff
changeset
|
2042 break; |
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diff
changeset
|
2043 |
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diff
changeset
|
2044 default: |
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diff
changeset
|
2045 break; |
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changeset
|
2046 } |
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diff
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|
2047 |
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|
2048 // Tag all the children of this resource as to be explored |
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diff
changeset
|
2049 std::list<int64_t> tmp; |
1247 | 2050 db_.GetChildrenInternalId(tmp, resource); |
440
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diff
changeset
|
2051 for (std::list<int64_t>::const_iterator |
656 | 2052 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
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|
2053 { |
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diff
changeset
|
2054 toExplore.push(*it); |
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diff
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|
2055 } |
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diff
changeset
|
2056 } |
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changeset
|
2057 } |
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|
2058 |
646 | 2059 if (countStudies == 0) |
2060 { | |
2061 countStudies = 1; | |
2062 } | |
2063 | |
2064 if (countSeries == 0) | |
2065 { | |
2066 countSeries = 1; | |
2067 } | |
2068 } | |
2069 | |
2070 | |
2665
389d050a2e66
fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2071 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
389d050a2e66
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diff
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|
2072 unsigned int threadSleep) |
511
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|
2073 { |
2940
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changeset
|
2074 int stableAge; |
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changeset
|
2075 |
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changeset
|
2076 { |
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diff
changeset
|
2077 OrthancConfiguration::ReaderLock lock; |
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|
2078 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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|
2079 } |
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|
2080 |
511
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changeset
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2081 if (stableAge <= 0) |
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|
2082 { |
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|
2083 stableAge = 60; |
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2084 } |
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|
2085 |
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diff
changeset
|
2086 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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|
2087 |
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changeset
|
2088 while (!that->done_) |
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|
2089 { |
2665
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changeset
|
2090 // Check for stable resources each few seconds |
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changeset
|
2091 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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|
2092 |
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diff
changeset
|
2093 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2094 |
511
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changeset
|
2095 while (!that->unstableResources_.IsEmpty() && |
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|
2096 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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changeset
|
2097 { |
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|
2098 // This DICOM resource has not received any new instance for |
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diff
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|
2099 // some time. It can be considered as stable. |
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|
2100 |
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diff
changeset
|
2101 UnstableResourcePayload payload; |
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diff
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|
2102 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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diff
changeset
|
2103 |
513 | 2104 // Ensure that the resource is still existing before logging the change |
1247 | 2105 if (that->db_.IsExistingResource(id)) |
511
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changeset
|
2106 { |
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
2107 switch (payload.GetResourceType()) |
513 | 2108 { |
1177
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Plugins can monitor changes through callbacks
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|
2109 case ResourceType_Patient: |
1237 | 2110 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2111 break; |
511
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|
2112 |
1177
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diff
changeset
|
2113 case ResourceType_Study: |
1237 | 2114 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2115 break; |
511
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|
2116 |
1177
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changeset
|
2117 case ResourceType_Series: |
1237 | 2118 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2119 break; |
2120 | |
2121 default: | |
2122 throw OrthancException(ErrorCode_InternalError); | |
2123 } | |
2124 | |
2125 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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|
2126 } |
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|
2127 } |
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|
2128 } |
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changeset
|
2129 |
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changeset
|
2130 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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|
2131 } |
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2132 |
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2133 |
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|
2134 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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|
2135 Orthanc::ResourceType type, |
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changeset
|
2136 const std::string& publicId) |
511
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2137 { |
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|
2138 // WARNING: Before calling this method, "mutex_" must be locked. |
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2139 |
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changeset
|
2140 assert(type == Orthanc::ResourceType_Patient || |
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|
2141 type == Orthanc::ResourceType_Study || |
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|
2142 type == Orthanc::ResourceType_Series); |
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|
2143 |
1177
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changeset
|
2144 UnstableResourcePayload payload(type, publicId); |
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changeset
|
2145 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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changeset
|
2146 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
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diff
changeset
|
2147 |
1237 | 2148 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2149 } |
521 | 2150 |
2151 | |
2152 | |
3034
54e422fe31ce
moving LookupResource to graveyard
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3033
diff
changeset
|
2153 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2154 ResourceType level, |
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rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2155 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2156 const std::string& value) |
615 | 2157 { |
1727 | 2158 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2159 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2160 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2161 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2162 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2163 |
615 | 2164 result.clear(); |
2165 | |
3034
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moving LookupResource to graveyard
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diff
changeset
|
2166 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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|
2167 |
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diff
changeset
|
2168 std::vector<DatabaseConstraint> query; |
3073
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refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2169 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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diff
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|
2170 |
3075
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|
2171 std::list<std::string> tmp; |
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diff
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|
2172 |
3034
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diff
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|
2173 { |
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diff
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|
2174 boost::mutex::scoped_lock lock(mutex_); |
3075
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diff
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|
2175 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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|
2176 } |
3075
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diff
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|
2177 |
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diff
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|
2178 CopyListToVector(result, tmp); |
615 | 2179 } |
2180 | |
2181 | |
699
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|
2182 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
2183 const std::string& publicId) |
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|
2184 { |
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|
2185 boost::mutex::scoped_lock lock(mutex_); |
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2186 |
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2187 Transaction t(*this); |
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2188 |
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|
2189 ResourceType resourceType; |
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|
2190 int64_t resourceId; |
1294 | 2191 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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|
2192 { |
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|
2193 return StoreStatus_Failure; // Inexistent resource |
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|
2194 } |
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2195 |
704
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|
2196 // Remove possible previous attachment |
1247 | 2197 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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|
2198 |
704
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|
2199 // Locate the patient of the target resource |
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|
2200 int64_t patientId = resourceId; |
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|
2201 for (;;) |
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|
2202 { |
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|
2203 int64_t parent; |
1247 | 2204 if (db_.LookupParent(parent, patientId)) |
704
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|
2205 { |
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|
2206 // We have not reached the patient level yet |
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|
2207 patientId = parent; |
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|
2208 } |
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|
2209 else |
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|
2210 { |
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|
2211 // We have reached the patient level |
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|
2212 break; |
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|
2213 } |
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|
2214 } |
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|
2215 |
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diff
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|
2216 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2217 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2218 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2219 |
1247 | 2220 db_.AddAttachment(resourceId, attachment); |
699
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diff
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|
2221 |
1773
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|
2222 if (IsUserContentType(attachment.GetContentType())) |
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|
2223 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
2224 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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diff
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|
2225 } |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2226 |
699
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|
2227 t.Commit(attachment.GetCompressedSize()); |
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|
2228 |
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|
2229 return StoreStatus_Success; |
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|
2230 } |
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|
2231 |
702
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|
2232 |
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|
2233 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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|
2234 FileContentType type) |
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|
2235 { |
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|
2236 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2237 Transaction t(*this); |
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diff
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|
2238 |
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changeset
|
2239 ResourceType rtype; |
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diff
changeset
|
2240 int64_t id; |
1294 | 2241 if (!db_.LookupResource(id, rtype, publicId)) |
702
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|
2242 { |
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|
2243 throw OrthancException(ErrorCode_UnknownResource); |
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|
2244 } |
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|
2245 |
1247 | 2246 db_.DeleteAttachment(id, type); |
702
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diff
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|
2247 |
1773
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|
2248 if (IsUserContentType(type)) |
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diff
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|
2249 { |
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|
2250 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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|
2251 } |
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|
2252 |
702
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|
2253 t.Commit(0); |
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|
2254 } |
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|
2255 |
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2256 |
1249
40725595aaf0
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diff
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|
2257 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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|
2258 const std::string& value) |
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|
2259 { |
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diff
changeset
|
2260 boost::mutex::scoped_lock lock(mutex_); |
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|
2261 |
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changeset
|
2262 Transaction transaction(*this); |
1249
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diff
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|
2263 db_.SetGlobalProperty(property, value); |
3315
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diff
changeset
|
2264 transaction.Commit(0); |
1249
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diff
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2265 } |
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|
2266 |
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|
2267 |
2668
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changeset
|
2268 bool ServerIndex::LookupGlobalProperty(std::string& value, |
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2269 GlobalProperty property) |
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|
2270 { |
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|
2271 boost::mutex::scoped_lock lock(mutex_); |
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2272 return db_.LookupGlobalProperty(value, property); |
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2273 } |
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|
2274 |
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2275 |
1218
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|
2276 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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changeset
|
2277 const std::string& defaultValue) |
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|
2278 { |
1239 | 2279 std::string value; |
2668
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|
2280 |
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changeset
|
2281 if (LookupGlobalProperty(value, property)) |
1239 | 2282 { |
2283 return value; | |
2284 } | |
2285 else | |
2286 { | |
2287 return defaultValue; | |
2288 } | |
1218
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|
2289 } |
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|
2290 |
1352 | 2291 |
2292 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2293 const std::string& publicId, | |
1677
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|
2294 ResourceType expectedType, |
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diff
changeset
|
2295 ResourceType levelOfInterest) |
1352 | 2296 { |
1677
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diff
changeset
|
2297 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
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changeset
|
2298 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
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changeset
|
2299 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
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|
2300 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
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changeset
|
2301 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2302 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2303 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2304 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2305 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2306 |
1352 | 2307 result.Clear(); |
2308 | |
2309 boost::mutex::scoped_lock lock(mutex_); | |
2310 | |
2311 // Lookup for the requested resource | |
2312 int64_t id; | |
2313 ResourceType type; | |
2314 if (!db_.LookupResource(id, type, publicId) || | |
2315 type != expectedType) | |
2316 { | |
2317 return false; | |
2318 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2321 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2322 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2323 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2324 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2325 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2326 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2327 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2328 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2329 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2330 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2331 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2332 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2333 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2334 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2335 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2336 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2337 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2338 } |
1352 | 2339 else |
2340 { | |
2341 db_.GetMainDicomTags(result, id); | |
2342 return true; | |
2343 } | |
2344 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2345 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2346 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2347 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2348 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2349 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2350 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2351 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2352 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2353 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2354 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2355 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2356 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2357 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2358 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2359 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2360 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2361 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2362 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2363 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2364 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2367 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2369 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2373 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2375 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2376 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2377 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2379 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2383 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2384 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2385 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2386 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2387 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2388 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2389 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2390 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2391 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2392 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2393 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2394 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2395 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2396 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2397 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2398 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2399 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2400 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2401 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2402 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2403 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2404 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2405 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2406 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2407 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2408 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2409 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2410 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2411 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2412 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2413 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2414 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2415 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2416 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2417 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2418 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2419 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2420 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2421 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2422 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2423 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2424 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2425 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2426 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2427 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2428 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2429 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2430 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2431 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2432 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2433 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2434 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2435 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2436 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2437 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2438 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2439 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2440 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2441 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2442 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2443 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2444 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2445 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2446 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2447 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2448 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2449 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2450 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2451 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2452 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2453 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2454 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2455 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2456 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2457 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2458 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2459 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2460 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2461 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2462 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2466 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2467 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2468 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2469 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2470 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2471 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2472 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2473 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2474 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2475 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2476 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2477 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2478 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2479 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2480 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2481 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2483 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2484 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2485 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2486 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2487 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2501 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2502 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2503 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2504 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2505 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2506 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2507 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2508 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2526 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2527 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2528 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2529 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2530 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2531 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2532 } |
3025
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2533 |
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2534 |
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2535 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2536 const DatabaseLookup& source, |
2537 ResourceType queryLevel) const | |
2538 { | |
2539 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
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2540 |
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2541 target.clear(); |
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2542 target.reserve(source.GetConstraintsCount()); |
3031 | 2543 |
3027 | 2544 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2545 { | |
3031 | 2546 ResourceType level; |
2547 DicomTagType type; | |
3027 | 2548 |
3031 | 2549 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2550 | |
2551 if (type == DicomTagType_Identifier || | |
2552 type == DicomTagType_Main) | |
3027 | 2553 { |
3029
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2554 // Use the fact that patient-level tags are copied at the study level |
3031 | 2555 if (level == ResourceType_Patient && |
2556 queryLevel != ResourceType_Patient) | |
3027 | 2557 { |
3031 | 2558 level = ResourceType_Study; |
3027 | 2559 } |
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2560 |
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2561 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2562 } |
2563 } | |
2564 } | |
2565 | |
2566 | |
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2567 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
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2568 std::vector<std::string>* instancesId, |
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2569 const DatabaseLookup& lookup, |
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2570 ResourceType queryLevel, |
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2571 size_t limit) |
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2572 { |
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2573 std::vector<DatabaseConstraint> normalized; |
3027 | 2574 NormalizeLookup(normalized, lookup, queryLevel); |
2575 | |
3075
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2576 std::list<std::string> resourcesList, instancesList; |
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2577 |
3027 | 2578 { |
2579 boost::mutex::scoped_lock lock(mutex_); | |
3075
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2580 |
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2581 if (instancesId == NULL) |
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2582 { |
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2583 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
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2584 } |
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2585 else |
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2586 { |
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2587 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
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2588 } |
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2589 } |
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2590 |
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2591 CopyListToVector(resourcesId, resourcesList); |
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2592 |
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2593 if (instancesId != NULL) |
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2594 { |
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2595 CopyListToVector(*instancesId, instancesList); |
3027 | 2596 } |
3025
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2597 } |
0 | 2598 } |