Mercurial > hg > orthanc
annotate OrthancServer/Sources/ResourceFinder.cpp @ 5788:61c9e5df64d7 find-refactoring
handling of sequences from DB in RequestedTags
| author | Alain Mazy <am@orthanc.team> |
|---|---|
| date | Tue, 17 Sep 2024 16:17:53 +0200 |
| parents | 42ef98bb3c13 |
| children | 40ad08b75d84 |
| rev | line source |
|---|---|
| 5608 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
| 5608 | 7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 8 * | |
| 9 * This program is free software: you can redistribute it and/or | |
| 10 * modify it under the terms of the GNU General Public License as | |
| 11 * published by the Free Software Foundation, either version 3 of the | |
| 12 * License, or (at your option) any later version. | |
| 13 * | |
| 14 * This program is distributed in the hope that it will be useful, but | |
| 15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 * General Public License for more details. | |
| 18 * | |
| 19 * You should have received a copy of the GNU General Public License | |
| 20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 **/ | |
| 22 | |
| 23 | |
| 24 #include "PrecompiledHeadersServer.h" | |
| 25 #include "ResourceFinder.h" | |
| 26 | |
| 27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
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28 #include "../../OrthancFramework/Sources/Logging.h" |
| 5608 | 29 #include "../../OrthancFramework/Sources/OrthancException.h" |
| 30 #include "../../OrthancFramework/Sources/SerializationToolbox.h" | |
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31 #include "OrthancConfiguration.h" |
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32 #include "Search/DatabaseLookup.h" |
| 5608 | 33 #include "ServerContext.h" |
| 34 #include "ServerIndex.h" | |
| 35 | |
| 36 | |
| 37 namespace Orthanc | |
| 38 { | |
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39 static bool IsComputedTag(const DicomTag& tag) |
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40 { |
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41 return (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES || |
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42 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES || |
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43 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES || |
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44 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES || |
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45 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES || |
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46 tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES || |
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47 tag == DICOM_TAG_SOP_CLASSES_IN_STUDY || |
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48 tag == DICOM_TAG_MODALITIES_IN_STUDY || |
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49 tag == DICOM_TAG_INSTANCE_AVAILABILITY); |
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50 } |
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51 |
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52 void ResourceFinder::ConfigureChildrenCountComputedTag(DicomTag tag, |
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53 ResourceType parentLevel, |
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54 ResourceType childLevel) |
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55 { |
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56 if (request_.GetLevel() == parentLevel) |
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57 { |
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58 requestedComputedTags_.insert(tag); |
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59 request_.GetChildrenSpecification(childLevel).SetRetrieveIdentifiers(true); |
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60 } |
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61 } |
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62 |
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63 |
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64 void ResourceFinder::InjectChildrenCountComputedTag(DicomMap& requestedTags, |
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65 DicomTag tag, |
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66 const FindResponse::Resource& resource, |
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67 ResourceType level) const |
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68 { |
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69 if (IsRequestedComputedTag(tag)) |
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70 { |
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71 const std::set<std::string>& children = resource.GetChildrenIdentifiers(level); |
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72 requestedTags.SetValue(tag, boost::lexical_cast<std::string>(children.size()), false); |
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73 } |
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74 } |
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75 |
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76 |
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77 void ResourceFinder::InjectComputedTags(DicomMap& requestedTags, |
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78 const FindResponse::Resource& resource) const |
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79 { |
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80 switch (resource.GetLevel()) |
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81 { |
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82 case ResourceType_Patient: |
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83 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, resource, ResourceType_Study); |
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84 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, resource, ResourceType_Series); |
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85 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, resource, ResourceType_Instance); |
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86 break; |
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87 |
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88 case ResourceType_Study: |
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89 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, resource, ResourceType_Series); |
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90 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, resource, ResourceType_Instance); |
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91 |
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92 if (IsRequestedComputedTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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93 { |
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94 std::set<std::string> modalities; |
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95 resource.GetChildrenMainDicomTagValues(modalities, ResourceType_Series, DICOM_TAG_MODALITY); |
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96 |
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97 std::string s; |
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98 Toolbox::JoinStrings(s, modalities, "\\"); |
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99 |
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100 requestedTags.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, s, false); |
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101 } |
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102 |
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103 if (IsRequestedComputedTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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104 { |
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105 std::set<std::string> classes; |
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106 resource.GetChildrenMetadataValues(classes, ResourceType_Instance, MetadataType_Instance_SopClassUid); |
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107 |
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108 std::string s; |
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109 Toolbox::JoinStrings(s, classes, "\\"); |
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110 |
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111 requestedTags.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, s, false); |
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112 } |
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113 |
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114 break; |
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115 |
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116 case ResourceType_Series: |
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117 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, resource, ResourceType_Instance); |
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118 break; |
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119 |
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120 case ResourceType_Instance: |
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121 if (IsRequestedComputedTag(DICOM_TAG_INSTANCE_AVAILABILITY)) |
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122 { |
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123 requestedTags.SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
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124 } |
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125 break; |
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126 |
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127 default: |
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128 throw OrthancException(ErrorCode_InternalError); |
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129 } |
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130 } |
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131 |
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132 |
| 5608 | 133 SeriesStatus ResourceFinder::GetSeriesStatus(uint32_t& expectedNumberOfInstances, |
| 5689 | 134 const FindResponse::Resource& resource) |
| 5608 | 135 { |
| 5689 | 136 if (resource.GetLevel() != ResourceType_Series) |
| 5608 | 137 { |
| 138 throw OrthancException(ErrorCode_BadParameterType); | |
| 139 } | |
| 140 | |
| 141 std::string s; | |
| 142 if (!resource.LookupMetadata(s, ResourceType_Series, MetadataType_Series_ExpectedNumberOfInstances) || | |
| 143 !SerializationToolbox::ParseUnsignedInteger32(expectedNumberOfInstances, s)) | |
| 144 { | |
| 145 return SeriesStatus_Unknown; | |
| 146 } | |
| 147 | |
| 5674 | 148 std::set<std::string> values; |
| 149 resource.GetChildrenMetadataValues(values, ResourceType_Instance, MetadataType_Instance_IndexInSeries); | |
| 5608 | 150 |
| 151 std::set<int64_t> instances; | |
| 152 | |
| 5674 | 153 for (std::set<std::string>::const_iterator |
| 5608 | 154 it = values.begin(); it != values.end(); ++it) |
| 155 { | |
| 156 int64_t index; | |
| 157 | |
| 158 if (!SerializationToolbox::ParseInteger64(index, *it)) | |
| 159 { | |
| 160 return SeriesStatus_Unknown; | |
| 161 } | |
| 162 | |
| 163 if (index <= 0 || | |
| 164 index > static_cast<int64_t>(expectedNumberOfInstances)) | |
| 165 { | |
| 166 // Out-of-range instance index | |
| 167 return SeriesStatus_Inconsistent; | |
| 168 } | |
| 169 | |
| 170 if (instances.find(index) != instances.end()) | |
| 171 { | |
| 172 // Twice the same instance index | |
| 173 return SeriesStatus_Inconsistent; | |
| 174 } | |
| 175 | |
| 176 instances.insert(index); | |
| 177 } | |
| 178 | |
| 179 if (instances.size() == static_cast<size_t>(expectedNumberOfInstances)) | |
| 180 { | |
| 181 return SeriesStatus_Complete; | |
| 182 } | |
| 183 else | |
| 184 { | |
| 185 return SeriesStatus_Missing; | |
| 186 } | |
| 187 } | |
| 188 | |
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189 static void GetMainDicomSequencesFromMetadata(DicomMap& target, const FindResponse::Resource& resource, ResourceType level) |
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190 { |
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191 // read all main sequences from DB |
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192 std::string serializedSequences; |
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193 if (resource.LookupMetadata(serializedSequences, resource.GetLevel(), MetadataType_MainDicomSequences)) |
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194 { |
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195 Json::Value jsonMetadata; |
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196 Toolbox::ReadJson(jsonMetadata, serializedSequences); |
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197 |
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198 if (jsonMetadata["Version"].asInt() == 1) |
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199 { |
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200 target.FromDicomAsJson(jsonMetadata["Sequences"], true /* append */, true /* parseSequences */); |
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201 } |
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202 else |
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203 { |
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204 throw OrthancException(ErrorCode_NotImplemented); |
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205 } |
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206 } |
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207 } |
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208 |
| 5608 | 209 |
| 210 void ResourceFinder::Expand(Json::Value& target, | |
| 211 const FindResponse::Resource& resource, | |
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212 ServerIndex& index, |
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213 DicomToJsonFormat format, |
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214 bool includeAllMetadata) const |
| 5608 | 215 { |
| 216 /** | |
| 217 * This method closely follows "SerializeExpandedResource()" in | |
| 5689 | 218 * "ServerContext.cpp" from Orthanc 1.12.4. |
| 5608 | 219 **/ |
| 220 | |
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221 if (!expand_) |
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222 { |
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223 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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224 } |
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225 |
| 5608 | 226 if (resource.GetLevel() != request_.GetLevel()) |
| 227 { | |
| 228 throw OrthancException(ErrorCode_InternalError); | |
| 229 } | |
| 230 | |
| 231 target = Json::objectValue; | |
| 232 | |
| 233 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true); | |
| 234 target["ID"] = resource.GetIdentifier(); | |
| 235 | |
| 236 switch (resource.GetLevel()) | |
| 237 { | |
| 238 case ResourceType_Patient: | |
| 239 break; | |
| 240 | |
| 241 case ResourceType_Study: | |
| 242 target["ParentPatient"] = resource.GetParentIdentifier(); | |
| 243 break; | |
| 244 | |
| 245 case ResourceType_Series: | |
| 246 target["ParentStudy"] = resource.GetParentIdentifier(); | |
| 247 break; | |
| 248 | |
| 249 case ResourceType_Instance: | |
| 250 target["ParentSeries"] = resource.GetParentIdentifier(); | |
| 251 break; | |
| 252 | |
| 253 default: | |
| 254 throw OrthancException(ErrorCode_InternalError); | |
| 255 } | |
| 256 | |
| 257 if (resource.GetLevel() != ResourceType_Instance) | |
| 258 { | |
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259 const std::set<std::string>& children = resource.GetChildrenIdentifiers(GetChildResourceType(resource.GetLevel())); |
| 5608 | 260 |
| 261 Json::Value c = Json::arrayValue; | |
| 262 for (std::set<std::string>::const_iterator | |
| 263 it = children.begin(); it != children.end(); ++it) | |
| 264 { | |
| 265 c.append(*it); | |
| 266 } | |
| 267 | |
| 268 switch (resource.GetLevel()) | |
| 269 { | |
| 270 case ResourceType_Patient: | |
| 271 target["Studies"] = c; | |
| 272 break; | |
| 273 | |
| 274 case ResourceType_Study: | |
| 275 target["Series"] = c; | |
| 276 break; | |
| 277 | |
| 278 case ResourceType_Series: | |
| 279 target["Instances"] = c; | |
| 280 break; | |
| 281 | |
| 282 default: | |
| 283 throw OrthancException(ErrorCode_InternalError); | |
| 284 } | |
| 285 } | |
| 286 | |
| 287 switch (resource.GetLevel()) | |
| 288 { | |
| 289 case ResourceType_Patient: | |
| 290 case ResourceType_Study: | |
| 291 break; | |
| 292 | |
| 293 case ResourceType_Series: | |
| 294 { | |
| 295 uint32_t expectedNumberOfInstances; | |
| 296 SeriesStatus status = GetSeriesStatus(expectedNumberOfInstances, resource); | |
| 297 | |
| 298 target["Status"] = EnumerationToString(status); | |
| 299 | |
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300 static const char* const EXPECTED_NUMBER_OF_INSTANCES = "ExpectedNumberOfInstances"; |
| 5608 | 301 |
| 302 if (status == SeriesStatus_Unknown) | |
| 303 { | |
| 304 target[EXPECTED_NUMBER_OF_INSTANCES] = Json::nullValue; | |
| 305 } | |
| 306 else | |
| 307 { | |
| 308 target[EXPECTED_NUMBER_OF_INSTANCES] = expectedNumberOfInstances; | |
| 309 } | |
| 310 | |
| 311 break; | |
| 312 } | |
| 313 | |
| 314 case ResourceType_Instance: | |
| 315 { | |
| 316 FileInfo info; | |
| 317 if (resource.LookupAttachment(info, FileContentType_Dicom)) | |
| 318 { | |
| 319 target["FileSize"] = static_cast<Json::UInt64>(info.GetUncompressedSize()); | |
| 320 target["FileUuid"] = info.GetUuid(); | |
| 321 } | |
| 322 else | |
| 323 { | |
| 324 throw OrthancException(ErrorCode_InternalError); | |
| 325 } | |
| 326 | |
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327 static const char* const INDEX_IN_SERIES = "IndexInSeries"; |
| 5608 | 328 |
| 329 std::string s; | |
| 5702 | 330 uint32_t indexInSeries; |
| 5608 | 331 if (resource.LookupMetadata(s, ResourceType_Instance, MetadataType_Instance_IndexInSeries) && |
| 5702 | 332 SerializationToolbox::ParseUnsignedInteger32(indexInSeries, s)) |
| 5608 | 333 { |
| 5702 | 334 target[INDEX_IN_SERIES] = indexInSeries; |
| 5608 | 335 } |
| 336 else | |
| 337 { | |
| 338 target[INDEX_IN_SERIES] = Json::nullValue; | |
| 339 } | |
| 340 | |
| 341 break; | |
| 342 } | |
| 343 | |
| 344 default: | |
| 345 throw OrthancException(ErrorCode_InternalError); | |
| 346 } | |
| 347 | |
| 348 std::string s; | |
| 349 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_AnonymizedFrom)) | |
| 350 { | |
| 351 target["AnonymizedFrom"] = s; | |
| 352 } | |
| 353 | |
| 354 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_ModifiedFrom)) | |
| 355 { | |
| 356 target["ModifiedFrom"] = s; | |
| 357 } | |
| 358 | |
| 359 if (resource.GetLevel() == ResourceType_Patient || | |
| 360 resource.GetLevel() == ResourceType_Study || | |
| 361 resource.GetLevel() == ResourceType_Series) | |
| 362 { | |
| 363 target["IsStable"] = !index.IsUnstableResource(resource.GetLevel(), resource.GetInternalId()); | |
| 364 | |
| 365 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_LastUpdate)) | |
| 366 { | |
| 367 target["LastUpdate"] = s; | |
| 368 } | |
| 369 } | |
| 370 | |
| 371 { | |
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372 DicomMap allMainDicomTags; |
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373 resource.GetMainDicomTags(allMainDicomTags, resource.GetLevel()); |
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374 |
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375 // read all main sequences from DB |
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376 GetMainDicomSequencesFromMetadata(allMainDicomTags, resource, resource.GetLevel()); |
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377 |
| 5608 | 378 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
| 379 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; | |
| 380 | |
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381 // TODO-FIND : Ignore "null" values |
| 5608 | 382 |
| 383 DicomMap levelMainDicomTags; | |
| 384 allMainDicomTags.ExtractResourceInformation(levelMainDicomTags, resource.GetLevel()); | |
| 385 | |
| 386 target[MAIN_DICOM_TAGS] = Json::objectValue; | |
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387 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], levelMainDicomTags, format); |
| 5608 | 388 |
| 389 if (resource.GetLevel() == ResourceType_Study) | |
| 390 { | |
| 391 DicomMap patientMainDicomTags; | |
| 392 allMainDicomTags.ExtractPatientInformation(patientMainDicomTags); | |
| 393 | |
| 394 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; | |
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395 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format); |
| 5608 | 396 } |
| 397 } | |
| 398 | |
| 399 { | |
| 400 Json::Value labels = Json::arrayValue; | |
| 401 | |
| 402 for (std::set<std::string>::const_iterator | |
| 403 it = resource.GetLabels().begin(); it != resource.GetLabels().end(); ++it) | |
| 404 { | |
| 405 labels.append(*it); | |
| 406 } | |
| 407 | |
| 408 target["Labels"] = labels; | |
| 409 } | |
| 410 | |
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411 if (includeAllMetadata) // new in Orthanc 1.12.4 |
| 5608 | 412 { |
| 413 const std::map<MetadataType, std::string>& m = resource.GetMetadata(resource.GetLevel()); | |
| 414 | |
| 415 Json::Value metadata = Json::objectValue; | |
| 416 | |
| 417 for (std::map<MetadataType, std::string>::const_iterator it = m.begin(); it != m.end(); ++it) | |
| 418 { | |
| 419 metadata[EnumerationToString(it->first)] = it->second; | |
| 420 } | |
| 421 | |
| 422 target["Metadata"] = metadata; | |
| 423 } | |
| 424 } | |
| 425 | |
| 426 | |
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427 void ResourceFinder::UpdateRequestLimits() |
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428 { |
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429 // By default, use manual paging |
| 5693 | 430 pagingMode_ = PagingMode_FullManual; |
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431 |
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432 if (databaseLimits_ != 0) |
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433 { |
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434 request_.SetLimits(0, databaseLimits_ + 1); |
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435 } |
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436 else |
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437 { |
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438 request_.ClearLimits(); |
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439 } |
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440 |
| 5693 | 441 if (lookup_.get() == NULL && |
| 442 (hasLimitsSince_ || hasLimitsCount_)) | |
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443 { |
| 5693 | 444 pagingMode_ = PagingMode_FullDatabase; |
| 445 request_.SetLimits(limitsSince_, limitsCount_); | |
| 446 } | |
| 447 | |
| 448 if (lookup_.get() != NULL && | |
| 449 isSimpleLookup_ && | |
| 450 (hasLimitsSince_ || hasLimitsCount_)) | |
| 451 { | |
| 452 /** | |
| 453 * TODO-FIND: "IDatabaseWrapper::ApplyLookupResources()" only | |
| 454 * accept the "limit" argument. The "since" must be implemented | |
| 455 * manually. | |
| 456 **/ | |
| 457 | |
| 458 if (hasLimitsSince_ && | |
| 459 limitsSince_ != 0) | |
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460 { |
| 5693 | 461 pagingMode_ = PagingMode_ManualSkip; |
| 462 request_.SetLimits(0, limitsCount_ + limitsSince_); | |
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463 } |
| 5693 | 464 else |
| 465 { | |
| 466 pagingMode_ = PagingMode_FullDatabase; | |
| 467 request_.SetLimits(0, limitsCount_); | |
| 468 } | |
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469 } |
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470 |
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471 // TODO-FIND: More cases could be added, depending on "GetDatabaseCapabilities()" |
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472 } |
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473 |
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474 |
| 5608 | 475 ResourceFinder::ResourceFinder(ResourceType level, |
| 476 bool expand) : | |
| 477 request_(level), | |
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478 databaseLimits_(0), |
| 5693 | 479 isSimpleLookup_(true), |
| 480 pagingMode_(PagingMode_FullManual), | |
| 481 hasLimitsSince_(false), | |
| 482 hasLimitsCount_(false), | |
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483 limitsSince_(0), |
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|
484 limitsCount_(0), |
| 5608 | 485 expand_(expand), |
|
5617
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started listing of children resources
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5616
diff
changeset
|
486 allowStorageAccess_(true), |
|
5713
d851a54e49b7
removed "includeAllMetadata_" member from ResourceFinder
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5709
diff
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|
487 hasRequestedTags_(false) |
| 5608 | 488 { |
|
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|
489 UpdateRequestLimits(); |
|
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|
490 |
| 5608 | 491 if (expand) |
| 492 { | |
|
5619
1864b16bc7b1
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diff
changeset
|
493 request_.SetRetrieveMainDicomTags(true); |
|
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diff
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|
494 request_.SetRetrieveMetadata(true); |
| 5608 | 495 request_.SetRetrieveLabels(true); |
| 496 | |
|
5621
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diff
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|
497 switch (level) |
| 5608 | 498 { |
|
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diff
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|
499 case ResourceType_Patient: |
|
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diff
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|
500 request_.GetChildrenSpecification(ResourceType_Study).SetRetrieveIdentifiers(true); |
|
5621
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diff
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|
501 break; |
|
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diff
changeset
|
502 |
|
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diff
changeset
|
503 case ResourceType_Study: |
|
5676
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diff
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|
504 request_.GetChildrenSpecification(ResourceType_Series).SetRetrieveIdentifiers(true); |
|
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|
505 request_.SetRetrieveParentIdentifier(true); |
|
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diff
changeset
|
506 break; |
| 5608 | 507 |
|
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diff
changeset
|
508 case ResourceType_Series: |
|
5676
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diff
changeset
|
509 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_IndexInSeries); // required for the SeriesStatus |
|
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diff
changeset
|
510 request_.GetChildrenSpecification(ResourceType_Instance).SetRetrieveIdentifiers(true); |
|
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|
511 request_.SetRetrieveParentIdentifier(true); |
|
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diff
changeset
|
512 break; |
|
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diff
changeset
|
513 |
|
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diff
changeset
|
514 case ResourceType_Instance: |
|
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diff
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|
515 request_.SetRetrieveAttachments(true); // for FileSize & FileUuid |
|
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diff
changeset
|
516 request_.SetRetrieveParentIdentifier(true); |
|
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diff
changeset
|
517 break; |
|
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diff
changeset
|
518 |
|
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diff
changeset
|
519 default: |
|
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diff
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|
520 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 5608 | 521 } |
| 522 } | |
| 523 } | |
| 524 | |
| 525 | |
|
5688
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diff
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|
526 void ResourceFinder::SetDatabaseLimits(uint64_t limits) |
|
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diff
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|
527 { |
|
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diff
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|
528 databaseLimits_ = limits; |
|
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diff
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|
529 UpdateRequestLimits(); |
|
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diff
changeset
|
530 } |
|
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diff
changeset
|
531 |
|
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diff
changeset
|
532 |
| 5693 | 533 void ResourceFinder::SetLimitsSince(uint64_t since) |
|
5688
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first implementation of database paging
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diff
changeset
|
534 { |
| 5693 | 535 if (hasLimitsSince_) |
|
5688
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first implementation of database paging
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diff
changeset
|
536 { |
|
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5686
diff
changeset
|
537 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
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diff
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|
538 } |
|
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diff
changeset
|
539 else |
|
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diff
changeset
|
540 { |
| 5693 | 541 hasLimitsSince_ = true; |
|
5688
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first implementation of database paging
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5686
diff
changeset
|
542 limitsSince_ = since; |
| 5693 | 543 UpdateRequestLimits(); |
| 544 } | |
| 545 } | |
| 546 | |
| 547 | |
| 548 void ResourceFinder::SetLimitsCount(uint64_t count) | |
| 549 { | |
| 550 if (hasLimitsCount_) | |
| 551 { | |
| 552 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 553 } | |
| 554 else | |
| 555 { | |
| 556 hasLimitsCount_ = true; | |
|
5688
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first implementation of database paging
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diff
changeset
|
557 limitsCount_ = count; |
|
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diff
changeset
|
558 UpdateRequestLimits(); |
|
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diff
changeset
|
559 } |
|
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diff
changeset
|
560 } |
|
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diff
changeset
|
561 |
|
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diff
changeset
|
562 |
|
5682
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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parents:
5676
diff
changeset
|
563 void ResourceFinder::SetDatabaseLookup(const DatabaseLookup& lookup) |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5676
diff
changeset
|
564 { |
| 5694 | 565 MainDicomTagsRegistry registry; |
| 566 | |
|
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11575590e493
integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
567 lookup_.reset(lookup.Clone()); |
|
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diff
changeset
|
568 |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
569 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
570 { |
|
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integrating DatabaseLookup into ResourceFinder
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5682
diff
changeset
|
571 DicomTag tag = lookup.GetConstraint(i).GetTag(); |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
572 if (IsComputedTag(tag)) |
|
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integrating DatabaseLookup into ResourceFinder
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5682
diff
changeset
|
573 { |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
574 AddRequestedTag(tag); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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5682
diff
changeset
|
575 } |
| 5694 | 576 else |
| 577 { | |
| 578 ResourceType level; | |
| 579 DicomTagType tagType; | |
| 580 registry.LookupTag(level, tagType, tag); | |
| 581 if (tagType == DicomTagType_Generic) | |
| 582 { | |
| 583 AddRequestedTag(tag); | |
| 584 } | |
| 585 } | |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
586 } |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
587 |
| 5693 | 588 isSimpleLookup_ = registry.NormalizeLookup(request_.GetDicomTagConstraints(), lookup, request_.GetLevel()); |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
589 |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
590 // "request_.GetDicomTagConstraints()" only contains constraints on main DICOM tags |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
591 |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
592 for (size_t i = 0; i < request_.GetDicomTagConstraints().GetSize(); i++) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
593 { |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5689
diff
changeset
|
594 const DatabaseConstraint& constraint = request_.GetDicomTagConstraints().GetConstraint(i); |
|
708952bd869c
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parents:
5689
diff
changeset
|
595 if (constraint.GetLevel() == request_.GetLevel()) |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
596 { |
|
708952bd869c
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parents:
5689
diff
changeset
|
597 request_.SetRetrieveMainDicomTags(true); |
|
708952bd869c
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parents:
5689
diff
changeset
|
598 } |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
599 else if (IsResourceLevelAboveOrEqual(constraint.GetLevel(), request_.GetLevel())) |
|
5686
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integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
600 { |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5689
diff
changeset
|
601 request_.GetParentSpecification(constraint.GetLevel()).SetRetrieveMainDicomTags(true); |
|
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parents:
5689
diff
changeset
|
602 } |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
603 else |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
604 { |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
605 LOG(WARNING) << "Executing a database lookup at level " << EnumerationToString(request_.GetLevel()) |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
606 << " on main DICOM tag " << constraint.GetTag().Format() << " from an inferior level (" |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
607 << EnumerationToString(constraint.GetLevel()) << "), this will return no result"; |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
608 } |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
609 |
|
708952bd869c
integration tests are passing with ResourceFinder
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5689
diff
changeset
|
610 if (IsComputedTag(constraint.GetTag())) |
|
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5689
diff
changeset
|
611 { |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
612 // Sanity check |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
613 throw OrthancException(ErrorCode_InternalError); |
|
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diff
changeset
|
614 } |
|
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integrating DatabaseLookup into ResourceFinder
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5682
diff
changeset
|
615 } |
|
5692
7c11a71927a9
improved handling of limits
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5690
diff
changeset
|
616 |
|
7c11a71927a9
improved handling of limits
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parents:
5690
diff
changeset
|
617 UpdateRequestLimits(); |
|
5682
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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parents:
5676
diff
changeset
|
618 } |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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5676
diff
changeset
|
619 |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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5676
diff
changeset
|
620 |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
621 void ResourceFinder::AddRequestedTag(const DicomTag& tag) |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
622 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
623 requestedTags_.insert(tag); |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
624 hasRequestedTags_ = true; |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
625 |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
626 if (DicomMap::IsMainDicomTag(tag, ResourceType_Patient)) |
|
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
627 { |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
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parents:
5619
diff
changeset
|
628 if (request_.GetLevel() == ResourceType_Patient) |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
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5619
diff
changeset
|
629 { |
| 5697 | 630 request_.SetRetrieveMainDicomTags(true); |
|
5620
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optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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5619
diff
changeset
|
631 requestedPatientTags_.insert(tag); |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
632 } |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
633 else |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
634 { |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
635 /** |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
636 * This comes from the fact that patient-level tags are copied |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
637 * at the study level, as implemented by "ResourcesContent::AddResource()". |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
638 **/ |
| 5697 | 639 requestedStudyTags_.insert(tag); |
| 640 | |
| 641 if (request_.GetLevel() == ResourceType_Study) | |
| 642 { | |
| 643 request_.SetRetrieveMainDicomTags(true); | |
| 644 } | |
| 645 else | |
| 646 { | |
| 647 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 648 } | |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
649 } |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
650 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
651 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Study)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
652 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
653 if (request_.GetLevel() == ResourceType_Patient) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
654 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
655 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
656 << " should only be read at the study, series, or instance level"; |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
657 request_.SetRetrieveOneInstanceMetadataAndAttachments(true); // we might need to get it from one instance |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
658 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
659 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
660 { |
| 5697 | 661 if (request_.GetLevel() == ResourceType_Study) |
| 662 { | |
| 663 request_.SetRetrieveMainDicomTags(true); | |
| 664 } | |
| 665 else | |
| 666 { | |
| 667 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 668 } | |
| 669 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
670 requestedStudyTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
671 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
672 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
673 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Series)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
674 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
675 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
676 request_.GetLevel() == ResourceType_Study) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
677 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
678 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
679 << " should only be read at the series or instance level"; |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
680 request_.SetRetrieveOneInstanceMetadataAndAttachments(true); // we might need to get it from one instance |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
681 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
682 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
683 { |
| 5697 | 684 if (request_.GetLevel() == ResourceType_Series) |
| 685 { | |
| 686 request_.SetRetrieveMainDicomTags(true); | |
| 687 } | |
| 688 else | |
| 689 { | |
| 690 request_.GetParentSpecification(ResourceType_Series).SetRetrieveMainDicomTags(true); | |
| 691 } | |
| 692 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
693 requestedSeriesTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
694 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
695 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
696 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Instance)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
697 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
698 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
699 request_.GetLevel() == ResourceType_Study || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
700 request_.GetLevel() == ResourceType_Series) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
701 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
702 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
703 << " should only be read at the instance level"; |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
704 request_.SetRetrieveOneInstanceMetadataAndAttachments(true); // we might need to get it from one instance |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
705 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
706 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
707 { |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
708 request_.SetRetrieveMainDicomTags(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
709 requestedInstanceTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
710 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
711 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
712 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
713 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
714 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Study); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
715 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
716 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
717 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
718 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
719 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
720 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
721 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
722 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
723 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
724 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
725 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
726 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
727 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
728 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
729 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
730 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
731 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
732 else if (tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
733 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
734 ConfigureChildrenCountComputedTag(tag, ResourceType_Series, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
735 } |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
736 else if (tag == DICOM_TAG_SOP_CLASSES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
737 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
738 requestedComputedTags_.insert(tag); |
|
5676
b744a2cf408a
shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5674
diff
changeset
|
739 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_SopClassUid); |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
740 } |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
741 else if (tag == DICOM_TAG_MODALITIES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
742 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
743 requestedComputedTags_.insert(tag); |
|
5752
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
744 if (request_.GetLevel() < ResourceType_Series) |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
745 { |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
746 request_.GetChildrenSpecification(ResourceType_Series).AddMainDicomTag(DICOM_TAG_MODALITY); |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
747 } |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
748 else if (request_.GetLevel() == ResourceType_Instance) // this happens in QIDO-RS when searching for instances without specifying a StudyInstanceUID -> all Study level tags must be included in the response |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
749 { |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
750 request_.GetParentSpecification(ResourceType_Series).SetRetrieveMainDicomTags(true); |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
751 } |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
752 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
753 else if (tag == DICOM_TAG_INSTANCE_AVAILABILITY) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
754 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
755 requestedComputedTags_.insert(tag); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
756 } |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
757 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
758 { |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
759 // This is neither a main DICOM tag, nor a computed DICOM tag: |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
760 // We might need to access the DICOM file |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
761 if (request_.GetLevel() != ResourceType_Instance) |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
762 { |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
763 request_.SetRetrieveOneInstanceMetadataAndAttachments(true); |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
764 } |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
765 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
766 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
767 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
768 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
769 void ResourceFinder::AddRequestedTags(const std::set<DicomTag>& tags) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
770 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
771 for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
772 { |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
773 AddRequestedTag(*it); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
774 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
775 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
776 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
777 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
778 static void InjectRequestedTags(DicomMap& target, |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
779 std::set<DicomTag>& remainingRequestedTags /* in & out */, |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
780 const FindResponse::Resource& resource, |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
781 ResourceType level/*, |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
782 const std::set<DicomTag>& tags*/) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
783 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
784 if (!remainingRequestedTags.empty()) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
785 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
786 DicomMap m; |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
787 resource.GetAllMainDicomTags(m); // DicomTags from DB |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
788 GetMainDicomSequencesFromMetadata(m, resource, resource.GetLevel()); // DicomSequences from metadata |
|
5787
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
789 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
790 // check which tags have been saved in DB; that's the way to know if they are missing because they were not saved or because they have no value |
|
5787
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
791 std::set<DicomTag> savedMainDicomTags; |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
792 std::string signature = DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Study); // default signature in case it's not in the metadata (= the signature for 1.11.0) |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
793 if (resource.LookupMetadata(signature, resource.GetLevel(), MetadataType_MainDicomTagsSignature)) |
|
5787
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
794 { |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
795 if (level == ResourceType_Study) // when we retrieve the study tags, we actually also get the patient tags that are also saved at study level but not included in the signature |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
796 { |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
797 signature += ";" + DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Patient); // append the default signature (from before 1.11.0) |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
798 } |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
799 |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
800 FromDcmtkBridge::ParseListOfTags(savedMainDicomTags, signature); |
|
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
801 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
802 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
803 std::set<DicomTag> copiedTags; |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
804 for (std::set<DicomTag>::const_iterator it = remainingRequestedTags.begin(); it != remainingRequestedTags.end(); ++it) |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
805 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
806 if (target.CopyTagIfExists(m, *it)) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
807 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
808 copiedTags.insert(*it); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
809 } |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
810 else if (savedMainDicomTags.find(*it) != savedMainDicomTags.end()) // the tag should have been saved in DB but has no value so we consider it has been copied |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
811 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
812 copiedTags.insert(*it); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
813 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
814 } |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
815 |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
816 Toolbox::RemoveSets(remainingRequestedTags, copiedTags); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
817 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
818 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
819 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
820 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
821 static void ReadMissingTagsFromStorageArea(DicomMap& requestedTags, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
822 ServerContext& context, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
823 const FindRequest& request, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
824 const FindResponse::Resource& resource, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
825 const std::set<DicomTag>& missingTags) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
826 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
827 OrthancConfiguration::ReaderLock lock; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
828 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
829 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
830 std::string missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
831 FromDcmtkBridge::FormatListOfTags(missings, missingTags); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
832 |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
833 LOG(WARNING) << "W001: Accessing DICOM tags from storage when accessing " |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
834 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false) |
| 5764 | 835 << " " << resource.GetIdentifier() |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
836 << ": " << missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
837 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
838 |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
839 // TODO-FIND: What do we do if the DICOM has been removed since the request? |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
840 // Do we fail, or do we skip the resource? |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
841 |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
842 Json::Value tmpDicomAsJson; |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
843 |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
844 if (request.GetLevel() == ResourceType_Instance && |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
845 request.IsRetrieveMetadata() && |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
846 request.IsRetrieveAttachments()) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
847 { |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
848 LOG(INFO) << "Will retrieve missing DICOM tags from instance: " << resource.GetIdentifier(); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
849 |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
850 context.ReadDicomAsJson(tmpDicomAsJson, resource.GetIdentifier(), resource.GetMetadata(ResourceType_Instance), |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
851 resource.GetAttachments(), missingTags /* ignoreTagLength */); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
852 } |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
853 else if (request.GetLevel() != ResourceType_Instance && |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
854 request.IsRetrieveOneInstanceMetadataAndAttachments()) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
855 { |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
856 LOG(INFO) << "Will retrieve missing DICOM tags from instance: " << resource.GetOneInstancePublicId(); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
857 |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
858 context.ReadDicomAsJson(tmpDicomAsJson, resource.GetOneInstancePublicId(), resource.GetOneInstanceMetadata(), |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
859 resource.GetOneInstanceAttachments(), missingTags /* ignoreTagLength */); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
860 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
861 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
862 { |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
863 // TODO-FIND: This fallback shouldn't be necessary |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
864 |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
865 FindRequest requestDicomAttachment(request.GetLevel()); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
866 requestDicomAttachment.SetOrthancId(request.GetLevel(), resource.GetIdentifier()); |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
867 |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
868 if (request.GetLevel() == ResourceType_Instance) |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
869 { |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
870 requestDicomAttachment.SetRetrieveMetadata(true); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
871 requestDicomAttachment.SetRetrieveAttachments(true); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
872 } |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
873 else |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
874 { |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
875 requestDicomAttachment.SetRetrieveOneInstanceMetadataAndAttachments(true); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
876 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
877 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
878 FindResponse responseDicomAttachment; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
879 context.GetIndex().ExecuteFind(responseDicomAttachment, requestDicomAttachment); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
880 |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
881 if (responseDicomAttachment.GetSize() != 1) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
882 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
883 throw OrthancException(ErrorCode_InexistentFile); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
884 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
885 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
886 { |
|
5772
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
887 const FindResponse::Resource& response = responseDicomAttachment.GetResourceByIndex(0); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
888 const std::string instancePublicId = response.GetIdentifier(); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
889 LOG(INFO) << "Will retrieve missing DICOM tags from instance: " << instancePublicId; |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
890 |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
891 if (request.GetLevel() == ResourceType_Instance) |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
892 { |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
893 context.ReadDicomAsJson(tmpDicomAsJson, response.GetIdentifier(), response.GetMetadata(ResourceType_Instance), |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
894 response.GetAttachments(), missingTags /* ignoreTagLength */); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
895 } |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
896 else |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
897 { |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
898 context.ReadDicomAsJson(tmpDicomAsJson, response.GetOneInstancePublicId(), response.GetOneInstanceMetadata(), |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
899 response.GetOneInstanceAttachments(), missingTags /* ignoreTagLength */); |
|
093a8693ba16
replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5764
diff
changeset
|
900 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
901 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
902 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
903 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
904 DicomMap tmpDicomMap; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
905 tmpDicomMap.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
906 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
907 for (std::set<DicomTag>::const_iterator it = missingTags.begin(); it != missingTags.end(); ++it) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
908 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
909 assert(!requestedTags.HasTag(*it)); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
910 if (tmpDicomMap.HasTag(*it)) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
911 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
912 requestedTags.SetValue(*it, tmpDicomMap.GetValue(*it)); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
913 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
914 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
915 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
916 requestedTags.SetNullValue(*it); // TODO-FIND: Is this compatible with Orthanc <= 1.12.3? |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
917 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
918 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
919 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
920 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
921 |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
922 void ResourceFinder::Execute(IVisitor& visitor, |
|
5621
732ec9feeea8
introduction of FindRequest::ChildrenRetrieveSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5620
diff
changeset
|
923 ServerContext& context) const |
| 5608 | 924 { |
| 5764 | 925 bool isWarning002Enabled = false; |
|
5787
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
926 bool isWarning004Enabled = false; |
| 5764 | 927 |
| 928 { | |
| 929 OrthancConfiguration::ReaderLock lock; | |
| 930 isWarning002Enabled = lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb); | |
|
5787
42ef98bb3c13
Do not read from disk when not required
Alain Mazy <am@orthanc.team>
parents:
5774
diff
changeset
|
931 isWarning004Enabled = lock.GetConfiguration().IsWarningEnabled(Warnings_004_NoMainDicomTagsSignature); |
| 5764 | 932 } |
| 933 | |
| 5608 | 934 FindResponse response; |
| 935 context.GetIndex().ExecuteFind(response, request_); | |
| 936 | |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
937 bool complete; |
| 5693 | 938 |
| 939 switch (pagingMode_) | |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
940 { |
| 5693 | 941 case PagingMode_FullDatabase: |
| 942 case PagingMode_ManualSkip: | |
| 943 complete = true; | |
| 944 break; | |
| 945 | |
| 946 case PagingMode_FullManual: | |
| 947 complete = (databaseLimits_ == 0 || | |
| 948 response.GetSize() <= databaseLimits_); | |
| 949 break; | |
| 950 | |
| 951 default: | |
| 952 throw OrthancException(ErrorCode_InternalError); | |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
953 } |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
954 |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5689
diff
changeset
|
955 if (lookup_.get() != NULL) |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
956 { |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
957 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << response.GetSize(); |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
958 } |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
959 |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
960 size_t countResults = 0; |
|
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
961 size_t skipped = 0; |
| 5608 | 962 |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
963 for (size_t i = 0; i < response.GetSize(); i++) |
| 5608 | 964 { |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
965 const FindResponse::Resource& resource = response.GetResourceByIndex(i); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
966 |
|
5774
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
967 #if 0 |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
968 { |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
969 Json::Value v; |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
970 resource.DebugExport(v, request_); |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
971 std::cout << v.toStyledString(); |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
972 } |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
973 #endif |
|
f96abfe08946
implementation of specialized SQL commands in SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5772
diff
changeset
|
974 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
975 DicomMap outRequestedTags; |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
976 |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
977 if (hasRequestedTags_) |
| 5608 | 978 { |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
979 std::set<DicomTag> remainingRequestedTags = requestedTags_; // at this point, all requested tags are "missing" |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
980 |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
981 InjectComputedTags(outRequestedTags, resource); |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
982 Toolbox::RemoveSets(remainingRequestedTags, requestedComputedTags_); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
983 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
984 InjectRequestedTags(outRequestedTags, remainingRequestedTags, resource, ResourceType_Patient /*, requestedPatientTags_*/); |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
985 InjectRequestedTags(outRequestedTags, remainingRequestedTags, resource, ResourceType_Study /*, requestedStudyTags_*/); |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
986 InjectRequestedTags(outRequestedTags, remainingRequestedTags, resource, ResourceType_Series /*, requestedSeriesTags_*/); |
|
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
987 InjectRequestedTags(outRequestedTags, remainingRequestedTags, resource, ResourceType_Instance /*, requestedInstanceTags_*/); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
988 |
|
5788
61c9e5df64d7
handling of sequences from DB in RequestedTags
Alain Mazy <am@orthanc.team>
parents:
5787
diff
changeset
|
989 if (!remainingRequestedTags.empty()) |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
990 { |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
991 if (!allowStorageAccess_) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
992 { |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
993 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
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994 "Cannot add missing requested tags, as access to file storage is disallowed"); |
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995 } |
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996 else |
|
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997 { |
|
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998 ReadMissingTagsFromStorageArea(outRequestedTags, context, request_, resource, remainingRequestedTags); |
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999 } |
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1000 } |
| 5764 | 1001 |
| 1002 std::string mainDicomTagsSignature; | |
| 1003 if (isWarning002Enabled && | |
| 1004 resource.LookupMetadata(mainDicomTagsSignature, resource.GetLevel(), MetadataType_MainDicomTagsSignature) && | |
| 1005 mainDicomTagsSignature != DicomMap::GetMainDicomTagsSignature(resource.GetLevel())) | |
| 1006 { | |
| 1007 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false) | |
| 1008 << " has been stored with another version of Main Dicom Tags list, you should POST to /" | |
| 1009 << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false) | |
| 1010 << "/" << resource.GetIdentifier() | |
| 1011 << "/reconstruct to update the list of tags saved in DB or run the Housekeeper plugin. Some MainDicomTags might be missing from this answer."; | |
| 1012 } | |
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1013 else if (isWarning004Enabled && |
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1014 !resource.LookupMetadata(mainDicomTagsSignature, resource.GetLevel(), MetadataType_MainDicomTagsSignature)) |
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1015 { |
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1016 // LOG(WARNING) << "W004: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false) |
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1017 // << " has been stored a while ago and does not have a MainDicomTagsSignature, you should POST to /" |
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1018 // << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false) |
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1019 // << "/" << resource.GetIdentifier() |
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1020 // << "/reconstruct to update the list of tags saved in DB or run the Housekeeper plugin. Some MainDicomTags might be missing from this answer."; |
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1021 // TODO: sometimes, we do not read the metadata at all ! |
|
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1022 } |
| 5764 | 1023 |
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1024 } |
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1025 |
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1026 bool match = true; |
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1027 |
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1028 if (lookup_.get() != NULL) |
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1029 { |
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1030 DicomMap tags; |
|
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1031 resource.GetAllMainDicomTags(tags); |
|
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1032 tags.Merge(outRequestedTags); |
|
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1033 match = lookup_->IsMatch(tags); |
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1034 } |
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1035 |
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1036 if (match) |
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1037 { |
| 5693 | 1038 if (pagingMode_ == PagingMode_FullDatabase) |
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1039 { |
|
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1040 visitor.Apply(resource, outRequestedTags); |
|
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1041 } |
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1042 else |
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1043 { |
| 5693 | 1044 if (hasLimitsSince_ && |
|
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1045 skipped < limitsSince_) |
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1046 { |
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1047 skipped++; |
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1048 } |
| 5693 | 1049 else if (hasLimitsCount_ && |
|
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1050 countResults >= limitsCount_) |
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1051 { |
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1052 // Too many results, don't mark as complete |
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1053 complete = false; |
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1054 break; |
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1055 } |
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1056 else |
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|
1057 { |
|
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1058 visitor.Apply(resource, outRequestedTags); |
|
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1059 countResults++; |
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1060 } |
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1061 } |
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1062 } |
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1063 } |
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1064 |
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1065 if (complete) |
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1066 { |
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1067 visitor.MarkAsComplete(); |
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1068 } |
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1069 } |
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1070 |
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1071 |
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1072 void ResourceFinder::Execute(Json::Value& target, |
|
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|
1073 ServerContext& context, |
|
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|
1074 DicomToJsonFormat format, |
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|
1075 bool includeAllMetadata) const |
|
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1076 { |
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1077 class Visitor : public IVisitor |
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1078 { |
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1079 private: |
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1080 const ResourceFinder& that_; |
|
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1081 ServerIndex& index_; |
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1082 Json::Value& target_; |
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1083 DicomToJsonFormat format_; |
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1084 bool hasRequestedTags_; |
|
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|
1085 bool includeAllMetadata_; |
|
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1086 |
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1087 public: |
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|
1088 Visitor(const ResourceFinder& that, |
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1089 ServerIndex& index, |
|
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1090 Json::Value& target, |
|
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|
1091 DicomToJsonFormat format, |
|
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|
1092 bool hasRequestedTags, |
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1093 bool includeAllMetadata) : |
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1094 that_(that), |
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1095 index_(index), |
|
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1096 target_(target), |
|
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|
1097 format_(format), |
|
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1098 hasRequestedTags_(hasRequestedTags), |
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|
1099 includeAllMetadata_(includeAllMetadata) |
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1100 { |
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1101 } |
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1102 |
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1103 virtual void Apply(const FindResponse::Resource& resource, |
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1104 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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1105 { |
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1106 if (that_.expand_) |
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1107 { |
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1108 Json::Value item; |
|
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1109 that_.Expand(item, resource, index_, format_, includeAllMetadata_); |
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1110 |
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1111 if (hasRequestedTags_) |
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1112 { |
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1113 static const char* const REQUESTED_TAGS = "RequestedTags"; |
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1114 item[REQUESTED_TAGS] = Json::objectValue; |
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1115 FromDcmtkBridge::ToJson(item[REQUESTED_TAGS], requestedTags, format_); |
|
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1116 } |
|
4690a0d2b01e
preliminary support of requestedTags
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1117 |
|
5688
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1118 target_.append(item); |
|
5609
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1119 } |
|
5686
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integrating DatabaseLookup into ResourceFinder
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1120 else |
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1121 { |
|
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1122 target_.append(resource.GetIdentifier()); |
|
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1123 } |
| 5608 | 1124 } |
|
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first implementation of database paging
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1125 |
|
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1126 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
|
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1127 { |
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parents:
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1128 } |
|
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1129 }; |
|
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1130 |
|
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1131 target = Json::arrayValue; |
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1132 |
|
5713
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1133 Visitor visitor(*this, context.GetIndex(), target, format, hasRequestedTags_, includeAllMetadata); |
|
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1134 Execute(visitor, context); |
| 5608 | 1135 } |
|
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1136 |
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1137 |
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1138 bool ResourceFinder::ExecuteOneResource(Json::Value& target, |
|
5709
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1139 ServerContext& context, |
|
5713
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1140 DicomToJsonFormat format, |
|
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1141 bool includeAllMetadata) const |
|
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1142 { |
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1143 Json::Value answer; |
|
5713
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1144 Execute(answer, context, format, includeAllMetadata); |
|
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1145 |
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expansion of single resources using ResourceFinder
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1146 if (answer.type() != Json::arrayValue) |
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1147 { |
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1148 throw OrthancException(ErrorCode_InternalError); |
|
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1149 } |
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1150 else if (answer.size() > 1) |
|
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parents:
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|
1151 { |
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parents:
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1152 throw OrthancException(ErrorCode_DatabasePlugin); |
|
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1153 } |
|
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parents:
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1154 else if (answer.empty()) |
|
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parents:
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changeset
|
1155 { |
|
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expansion of single resources using ResourceFinder
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parents:
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|
1156 // Inexistent resource (or was deleted between the first and second phases) |
|
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parents:
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1157 return false; |
|
a10978a5e65c
expansion of single resources using ResourceFinder
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parents:
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|
1158 } |
|
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expansion of single resources using ResourceFinder
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parents:
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1159 else |
|
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expansion of single resources using ResourceFinder
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parents:
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changeset
|
1160 { |
|
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expansion of single resources using ResourceFinder
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parents:
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1161 target = answer[0]; |
|
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expansion of single resources using ResourceFinder
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parents:
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1162 return true; |
|
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expansion of single resources using ResourceFinder
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parents:
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diff
changeset
|
1163 } |
|
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1164 } |
| 5608 | 1165 } |