Mercurial > hg > orthanc
annotate OrthancServer/Sources/ResourceFinder.cpp @ 5701:388aef262b1b find-refactoring
reduce the number of metadata retrievals
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 12 Jul 2024 15:08:43 +0200 |
| parents | e8e028aed89f |
| children | 359a8adb3802 |
| rev | line source |
|---|---|
| 5608 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
| 5608 | 7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 8 * | |
| 9 * This program is free software: you can redistribute it and/or | |
| 10 * modify it under the terms of the GNU General Public License as | |
| 11 * published by the Free Software Foundation, either version 3 of the | |
| 12 * License, or (at your option) any later version. | |
| 13 * | |
| 14 * This program is distributed in the hope that it will be useful, but | |
| 15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 * General Public License for more details. | |
| 18 * | |
| 19 * You should have received a copy of the GNU General Public License | |
| 20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 **/ | |
| 22 | |
| 23 | |
| 24 #include "PrecompiledHeadersServer.h" | |
| 25 #include "ResourceFinder.h" | |
| 26 | |
| 27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
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28 #include "../../OrthancFramework/Sources/Logging.h" |
| 5608 | 29 #include "../../OrthancFramework/Sources/OrthancException.h" |
| 30 #include "../../OrthancFramework/Sources/SerializationToolbox.h" | |
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31 #include "OrthancConfiguration.h" |
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32 #include "Search/DatabaseLookup.h" |
| 5608 | 33 #include "ServerContext.h" |
| 34 #include "ServerIndex.h" | |
| 35 | |
| 36 | |
| 37 namespace Orthanc | |
| 38 { | |
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39 static bool IsComputedTag(const DicomTag& tag) |
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40 { |
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41 return (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES || |
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42 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES || |
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43 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES || |
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44 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES || |
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45 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES || |
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46 tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES || |
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47 tag == DICOM_TAG_SOP_CLASSES_IN_STUDY || |
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48 tag == DICOM_TAG_MODALITIES_IN_STUDY || |
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49 tag == DICOM_TAG_INSTANCE_AVAILABILITY); |
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50 } |
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51 |
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52 void ResourceFinder::ConfigureChildrenCountComputedTag(DicomTag tag, |
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53 ResourceType parentLevel, |
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54 ResourceType childLevel) |
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55 { |
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56 if (request_.GetLevel() == parentLevel) |
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57 { |
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58 requestedComputedTags_.insert(tag); |
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59 hasRequestedTags_ = true; |
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60 request_.GetChildrenSpecification(childLevel).SetRetrieveIdentifiers(true); |
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61 } |
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62 } |
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63 |
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64 |
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65 void ResourceFinder::InjectChildrenCountComputedTag(DicomMap& requestedTags, |
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66 DicomTag tag, |
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67 const FindResponse::Resource& resource, |
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68 ResourceType level) const |
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69 { |
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70 if (IsRequestedComputedTag(tag)) |
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71 { |
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72 const std::set<std::string>& children = resource.GetChildrenIdentifiers(level); |
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73 requestedTags.SetValue(tag, boost::lexical_cast<std::string>(children.size()), false); |
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74 } |
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75 } |
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76 |
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77 |
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78 void ResourceFinder::InjectComputedTags(DicomMap& requestedTags, |
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79 const FindResponse::Resource& resource) const |
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80 { |
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81 switch (resource.GetLevel()) |
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82 { |
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83 case ResourceType_Patient: |
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84 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, resource, ResourceType_Study); |
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85 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, resource, ResourceType_Series); |
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86 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, resource, ResourceType_Instance); |
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87 break; |
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88 |
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89 case ResourceType_Study: |
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90 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, resource, ResourceType_Series); |
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91 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, resource, ResourceType_Instance); |
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92 |
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93 if (IsRequestedComputedTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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94 { |
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95 std::set<std::string> modalities; |
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96 resource.GetChildrenMainDicomTagValues(modalities, ResourceType_Series, DICOM_TAG_MODALITY); |
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97 |
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98 std::string s; |
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99 Toolbox::JoinStrings(s, modalities, "\\"); |
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100 |
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101 requestedTags.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, s, false); |
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102 } |
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103 |
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104 if (IsRequestedComputedTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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105 { |
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106 std::set<std::string> classes; |
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107 resource.GetChildrenMetadataValues(classes, ResourceType_Instance, MetadataType_Instance_SopClassUid); |
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108 |
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109 std::string s; |
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110 Toolbox::JoinStrings(s, classes, "\\"); |
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111 |
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112 requestedTags.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, s, false); |
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113 } |
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114 |
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115 break; |
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116 |
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117 case ResourceType_Series: |
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118 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, resource, ResourceType_Instance); |
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119 break; |
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120 |
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121 case ResourceType_Instance: |
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122 if (IsRequestedComputedTag(DICOM_TAG_INSTANCE_AVAILABILITY)) |
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123 { |
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124 requestedTags.SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
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125 } |
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126 break; |
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127 |
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128 default: |
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129 throw OrthancException(ErrorCode_InternalError); |
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130 } |
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131 } |
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132 |
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133 |
| 5608 | 134 SeriesStatus ResourceFinder::GetSeriesStatus(uint32_t& expectedNumberOfInstances, |
| 5689 | 135 const FindResponse::Resource& resource) |
| 5608 | 136 { |
| 5689 | 137 if (resource.GetLevel() != ResourceType_Series) |
| 5608 | 138 { |
| 139 throw OrthancException(ErrorCode_BadParameterType); | |
| 140 } | |
| 141 | |
| 142 std::string s; | |
| 143 if (!resource.LookupMetadata(s, ResourceType_Series, MetadataType_Series_ExpectedNumberOfInstances) || | |
| 144 !SerializationToolbox::ParseUnsignedInteger32(expectedNumberOfInstances, s)) | |
| 145 { | |
| 146 return SeriesStatus_Unknown; | |
| 147 } | |
| 148 | |
| 5674 | 149 std::set<std::string> values; |
| 150 resource.GetChildrenMetadataValues(values, ResourceType_Instance, MetadataType_Instance_IndexInSeries); | |
| 5608 | 151 |
| 152 std::set<int64_t> instances; | |
| 153 | |
| 5674 | 154 for (std::set<std::string>::const_iterator |
| 5608 | 155 it = values.begin(); it != values.end(); ++it) |
| 156 { | |
| 157 int64_t index; | |
| 158 | |
| 159 if (!SerializationToolbox::ParseInteger64(index, *it)) | |
| 160 { | |
| 161 return SeriesStatus_Unknown; | |
| 162 } | |
| 163 | |
| 164 if (index <= 0 || | |
| 165 index > static_cast<int64_t>(expectedNumberOfInstances)) | |
| 166 { | |
| 167 // Out-of-range instance index | |
| 168 return SeriesStatus_Inconsistent; | |
| 169 } | |
| 170 | |
| 171 if (instances.find(index) != instances.end()) | |
| 172 { | |
| 173 // Twice the same instance index | |
| 174 return SeriesStatus_Inconsistent; | |
| 175 } | |
| 176 | |
| 177 instances.insert(index); | |
| 178 } | |
| 179 | |
| 180 if (instances.size() == static_cast<size_t>(expectedNumberOfInstances)) | |
| 181 { | |
| 182 return SeriesStatus_Complete; | |
| 183 } | |
| 184 else | |
| 185 { | |
| 186 return SeriesStatus_Missing; | |
| 187 } | |
| 188 } | |
| 189 | |
| 190 | |
| 191 void ResourceFinder::Expand(Json::Value& target, | |
| 192 const FindResponse::Resource& resource, | |
| 193 ServerIndex& index) const | |
| 194 { | |
| 195 /** | |
| 196 * This method closely follows "SerializeExpandedResource()" in | |
| 5689 | 197 * "ServerContext.cpp" from Orthanc 1.12.4. |
| 5608 | 198 **/ |
| 199 | |
| 200 if (resource.GetLevel() != request_.GetLevel()) | |
| 201 { | |
| 202 throw OrthancException(ErrorCode_InternalError); | |
| 203 } | |
| 204 | |
| 205 target = Json::objectValue; | |
| 206 | |
| 207 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true); | |
| 208 target["ID"] = resource.GetIdentifier(); | |
| 209 | |
| 210 switch (resource.GetLevel()) | |
| 211 { | |
| 212 case ResourceType_Patient: | |
| 213 break; | |
| 214 | |
| 215 case ResourceType_Study: | |
| 216 target["ParentPatient"] = resource.GetParentIdentifier(); | |
| 217 break; | |
| 218 | |
| 219 case ResourceType_Series: | |
| 220 target["ParentStudy"] = resource.GetParentIdentifier(); | |
| 221 break; | |
| 222 | |
| 223 case ResourceType_Instance: | |
| 224 target["ParentSeries"] = resource.GetParentIdentifier(); | |
| 225 break; | |
| 226 | |
| 227 default: | |
| 228 throw OrthancException(ErrorCode_InternalError); | |
| 229 } | |
| 230 | |
| 231 if (resource.GetLevel() != ResourceType_Instance) | |
| 232 { | |
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233 const std::set<std::string>& children = resource.GetChildrenIdentifiers(GetChildResourceType(resource.GetLevel())); |
| 5608 | 234 |
| 235 Json::Value c = Json::arrayValue; | |
| 236 for (std::set<std::string>::const_iterator | |
| 237 it = children.begin(); it != children.end(); ++it) | |
| 238 { | |
| 239 c.append(*it); | |
| 240 } | |
| 241 | |
| 242 switch (resource.GetLevel()) | |
| 243 { | |
| 244 case ResourceType_Patient: | |
| 245 target["Studies"] = c; | |
| 246 break; | |
| 247 | |
| 248 case ResourceType_Study: | |
| 249 target["Series"] = c; | |
| 250 break; | |
| 251 | |
| 252 case ResourceType_Series: | |
| 253 target["Instances"] = c; | |
| 254 break; | |
| 255 | |
| 256 default: | |
| 257 throw OrthancException(ErrorCode_InternalError); | |
| 258 } | |
| 259 } | |
| 260 | |
| 261 switch (resource.GetLevel()) | |
| 262 { | |
| 263 case ResourceType_Patient: | |
| 264 case ResourceType_Study: | |
| 265 break; | |
| 266 | |
| 267 case ResourceType_Series: | |
| 268 { | |
| 269 uint32_t expectedNumberOfInstances; | |
| 270 SeriesStatus status = GetSeriesStatus(expectedNumberOfInstances, resource); | |
| 271 | |
| 272 target["Status"] = EnumerationToString(status); | |
| 273 | |
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274 static const char* const EXPECTED_NUMBER_OF_INSTANCES = "ExpectedNumberOfInstances"; |
| 5608 | 275 |
| 276 if (status == SeriesStatus_Unknown) | |
| 277 { | |
| 278 target[EXPECTED_NUMBER_OF_INSTANCES] = Json::nullValue; | |
| 279 } | |
| 280 else | |
| 281 { | |
| 282 target[EXPECTED_NUMBER_OF_INSTANCES] = expectedNumberOfInstances; | |
| 283 } | |
| 284 | |
| 285 break; | |
| 286 } | |
| 287 | |
| 288 case ResourceType_Instance: | |
| 289 { | |
| 290 FileInfo info; | |
| 291 if (resource.LookupAttachment(info, FileContentType_Dicom)) | |
| 292 { | |
| 293 target["FileSize"] = static_cast<Json::UInt64>(info.GetUncompressedSize()); | |
| 294 target["FileUuid"] = info.GetUuid(); | |
| 295 } | |
| 296 else | |
| 297 { | |
| 298 throw OrthancException(ErrorCode_InternalError); | |
| 299 } | |
| 300 | |
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301 static const char* const INDEX_IN_SERIES = "IndexInSeries"; |
| 5608 | 302 |
| 303 std::string s; | |
| 304 uint32_t index; | |
| 305 if (resource.LookupMetadata(s, ResourceType_Instance, MetadataType_Instance_IndexInSeries) && | |
| 306 SerializationToolbox::ParseUnsignedInteger32(index, s)) | |
| 307 { | |
| 308 target[INDEX_IN_SERIES] = index; | |
| 309 } | |
| 310 else | |
| 311 { | |
| 312 target[INDEX_IN_SERIES] = Json::nullValue; | |
| 313 } | |
| 314 | |
| 315 break; | |
| 316 } | |
| 317 | |
| 318 default: | |
| 319 throw OrthancException(ErrorCode_InternalError); | |
| 320 } | |
| 321 | |
| 322 std::string s; | |
| 323 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_AnonymizedFrom)) | |
| 324 { | |
| 325 target["AnonymizedFrom"] = s; | |
| 326 } | |
| 327 | |
| 328 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_ModifiedFrom)) | |
| 329 { | |
| 330 target["ModifiedFrom"] = s; | |
| 331 } | |
| 332 | |
| 333 if (resource.GetLevel() == ResourceType_Patient || | |
| 334 resource.GetLevel() == ResourceType_Study || | |
| 335 resource.GetLevel() == ResourceType_Series) | |
| 336 { | |
| 337 target["IsStable"] = !index.IsUnstableResource(resource.GetLevel(), resource.GetInternalId()); | |
| 338 | |
| 339 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_LastUpdate)) | |
| 340 { | |
| 341 target["LastUpdate"] = s; | |
| 342 } | |
| 343 } | |
| 344 | |
| 345 { | |
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346 DicomMap allMainDicomTags; |
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347 resource.GetMainDicomTags(allMainDicomTags, resource.GetLevel()); |
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348 |
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349 /** |
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350 * This section was part of "StatelessDatabaseOperations::ExpandResource()" |
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351 * in Orthanc <= 1.12.3 |
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352 **/ |
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353 |
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354 // read all main sequences from DB |
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355 std::string serializedSequences; |
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356 if (resource.LookupMetadata(serializedSequences, resource.GetLevel(), MetadataType_MainDicomSequences)) |
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357 { |
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358 Json::Value jsonMetadata; |
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359 Toolbox::ReadJson(jsonMetadata, serializedSequences); |
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360 |
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361 if (jsonMetadata["Version"].asInt() == 1) |
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362 { |
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363 allMainDicomTags.FromDicomAsJson(jsonMetadata["Sequences"], true /* append */, true /* parseSequences */); |
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364 } |
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365 else |
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366 { |
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367 throw OrthancException(ErrorCode_NotImplemented); |
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368 } |
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369 } |
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370 |
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371 /** |
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372 * End of section from StatelessDatabaseOperations |
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373 **/ |
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374 |
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375 |
| 5608 | 376 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
| 377 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; | |
| 378 | |
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379 // TODO-FIND : Ignore "null" values |
| 5608 | 380 |
| 381 DicomMap levelMainDicomTags; | |
| 382 allMainDicomTags.ExtractResourceInformation(levelMainDicomTags, resource.GetLevel()); | |
| 383 | |
| 384 target[MAIN_DICOM_TAGS] = Json::objectValue; | |
| 385 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], levelMainDicomTags, format_); | |
| 386 | |
| 387 if (resource.GetLevel() == ResourceType_Study) | |
| 388 { | |
| 389 DicomMap patientMainDicomTags; | |
| 390 allMainDicomTags.ExtractPatientInformation(patientMainDicomTags); | |
| 391 | |
| 392 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; | |
| 393 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format_); | |
| 394 } | |
| 395 } | |
| 396 | |
| 397 { | |
| 398 Json::Value labels = Json::arrayValue; | |
| 399 | |
| 400 for (std::set<std::string>::const_iterator | |
| 401 it = resource.GetLabels().begin(); it != resource.GetLabels().end(); ++it) | |
| 402 { | |
| 403 labels.append(*it); | |
| 404 } | |
| 405 | |
| 406 target["Labels"] = labels; | |
| 407 } | |
| 408 | |
| 409 if (includeAllMetadata_) // new in Orthanc 1.12.4 | |
| 410 { | |
| 411 const std::map<MetadataType, std::string>& m = resource.GetMetadata(resource.GetLevel()); | |
| 412 | |
| 413 Json::Value metadata = Json::objectValue; | |
| 414 | |
| 415 for (std::map<MetadataType, std::string>::const_iterator it = m.begin(); it != m.end(); ++it) | |
| 416 { | |
| 417 metadata[EnumerationToString(it->first)] = it->second; | |
| 418 } | |
| 419 | |
| 420 target["Metadata"] = metadata; | |
| 421 } | |
| 422 } | |
| 423 | |
| 424 | |
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425 void ResourceFinder::UpdateRequestLimits() |
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426 { |
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427 // By default, use manual paging |
| 5693 | 428 pagingMode_ = PagingMode_FullManual; |
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429 |
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430 if (databaseLimits_ != 0) |
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431 { |
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432 request_.SetLimits(0, databaseLimits_ + 1); |
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433 } |
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434 else |
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435 { |
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436 request_.ClearLimits(); |
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437 } |
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438 |
| 5693 | 439 if (lookup_.get() == NULL && |
| 440 (hasLimitsSince_ || hasLimitsCount_)) | |
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441 { |
| 5693 | 442 pagingMode_ = PagingMode_FullDatabase; |
| 443 request_.SetLimits(limitsSince_, limitsCount_); | |
| 444 } | |
| 445 | |
| 446 if (lookup_.get() != NULL && | |
| 447 isSimpleLookup_ && | |
| 448 (hasLimitsSince_ || hasLimitsCount_)) | |
| 449 { | |
| 450 /** | |
| 451 * TODO-FIND: "IDatabaseWrapper::ApplyLookupResources()" only | |
| 452 * accept the "limit" argument. The "since" must be implemented | |
| 453 * manually. | |
| 454 **/ | |
| 455 | |
| 456 if (hasLimitsSince_ && | |
| 457 limitsSince_ != 0) | |
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458 { |
| 5693 | 459 pagingMode_ = PagingMode_ManualSkip; |
| 460 request_.SetLimits(0, limitsCount_ + limitsSince_); | |
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461 } |
| 5693 | 462 else |
| 463 { | |
| 464 pagingMode_ = PagingMode_FullDatabase; | |
| 465 request_.SetLimits(0, limitsCount_); | |
| 466 } | |
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467 } |
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468 |
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469 // TODO-FIND: More cases could be added, depending on "GetDatabaseCapabilities()" |
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470 } |
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471 |
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472 |
| 5608 | 473 ResourceFinder::ResourceFinder(ResourceType level, |
| 474 bool expand) : | |
| 475 request_(level), | |
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476 databaseLimits_(0), |
| 5693 | 477 isSimpleLookup_(true), |
| 478 pagingMode_(PagingMode_FullManual), | |
| 479 hasLimitsSince_(false), | |
| 480 hasLimitsCount_(false), | |
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481 limitsSince_(0), |
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482 limitsCount_(0), |
| 5608 | 483 expand_(expand), |
| 484 format_(DicomToJsonFormat_Human), | |
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485 allowStorageAccess_(true), |
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486 hasRequestedTags_(false), |
| 5608 | 487 includeAllMetadata_(false) |
| 488 { | |
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489 UpdateRequestLimits(); |
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490 |
| 5608 | 491 if (expand) |
| 492 { | |
|
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diff
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|
493 request_.SetRetrieveMainDicomTags(true); |
|
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|
494 request_.SetRetrieveMetadata(true); |
| 5608 | 495 request_.SetRetrieveLabels(true); |
| 496 | |
|
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|
497 switch (level) |
| 5608 | 498 { |
|
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|
499 case ResourceType_Patient: |
|
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|
500 request_.GetChildrenSpecification(ResourceType_Study).SetRetrieveIdentifiers(true); |
|
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|
501 break; |
|
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diff
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|
502 |
|
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diff
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|
503 case ResourceType_Study: |
|
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diff
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|
504 request_.GetChildrenSpecification(ResourceType_Series).SetRetrieveIdentifiers(true); |
|
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|
505 request_.SetRetrieveParentIdentifier(true); |
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|
506 break; |
| 5608 | 507 |
|
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diff
changeset
|
508 case ResourceType_Series: |
|
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diff
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|
509 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_IndexInSeries); // required for the SeriesStatus |
|
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diff
changeset
|
510 request_.GetChildrenSpecification(ResourceType_Instance).SetRetrieveIdentifiers(true); |
|
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|
511 request_.SetRetrieveParentIdentifier(true); |
|
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|
512 break; |
|
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|
513 |
|
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diff
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|
514 case ResourceType_Instance: |
|
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|
515 request_.SetRetrieveAttachments(true); // for FileSize & FileUuid |
|
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|
516 request_.SetRetrieveParentIdentifier(true); |
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|
517 break; |
|
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|
518 |
|
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|
519 default: |
|
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|
520 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 5608 | 521 } |
| 522 } | |
| 523 } | |
| 524 | |
| 525 | |
|
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|
526 void ResourceFinder::SetDatabaseLimits(uint64_t limits) |
|
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|
527 { |
|
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diff
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|
528 databaseLimits_ = limits; |
|
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|
529 UpdateRequestLimits(); |
|
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|
530 } |
|
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diff
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|
531 |
|
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diff
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|
532 |
| 5693 | 533 void ResourceFinder::SetLimitsSince(uint64_t since) |
|
5688
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diff
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|
534 { |
| 5693 | 535 if (hasLimitsSince_) |
|
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|
536 { |
|
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diff
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|
537 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
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|
538 } |
|
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diff
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|
539 else |
|
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diff
changeset
|
540 { |
| 5693 | 541 hasLimitsSince_ = true; |
|
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diff
changeset
|
542 limitsSince_ = since; |
| 5693 | 543 UpdateRequestLimits(); |
| 544 } | |
| 545 } | |
| 546 | |
| 547 | |
| 548 void ResourceFinder::SetLimitsCount(uint64_t count) | |
| 549 { | |
| 550 if (hasLimitsCount_) | |
| 551 { | |
| 552 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 553 } | |
| 554 else | |
| 555 { | |
| 556 hasLimitsCount_ = true; | |
|
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diff
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|
557 limitsCount_ = count; |
|
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diff
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|
558 UpdateRequestLimits(); |
|
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diff
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|
559 } |
|
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|
560 } |
|
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|
561 |
|
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changeset
|
562 |
|
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started refactoring of ServerContext::Apply()
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diff
changeset
|
563 void ResourceFinder::SetDatabaseLookup(const DatabaseLookup& lookup) |
|
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started refactoring of ServerContext::Apply()
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|
564 { |
| 5694 | 565 MainDicomTagsRegistry registry; |
| 566 | |
|
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|
567 lookup_.reset(lookup.Clone()); |
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changeset
|
568 |
|
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diff
changeset
|
569 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
|
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|
570 { |
|
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diff
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|
571 DicomTag tag = lookup.GetConstraint(i).GetTag(); |
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|
572 if (IsComputedTag(tag)) |
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|
573 { |
|
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changeset
|
574 AddRequestedTag(tag); |
|
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diff
changeset
|
575 } |
| 5694 | 576 else |
| 577 { | |
| 578 ResourceType level; | |
| 579 DicomTagType tagType; | |
| 580 registry.LookupTag(level, tagType, tag); | |
| 581 if (tagType == DicomTagType_Generic) | |
| 582 { | |
| 583 AddRequestedTag(tag); | |
| 584 } | |
| 585 } | |
|
5686
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diff
changeset
|
586 } |
|
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diff
changeset
|
587 |
| 5693 | 588 isSimpleLookup_ = registry.NormalizeLookup(request_.GetDicomTagConstraints(), lookup, request_.GetLevel()); |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
589 |
|
5690
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diff
changeset
|
590 // "request_.GetDicomTagConstraints()" only contains constraints on main DICOM tags |
|
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5689
diff
changeset
|
591 |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
592 for (size_t i = 0; i < request_.GetDicomTagConstraints().GetSize(); i++) |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
593 { |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
594 const DatabaseConstraint& constraint = request_.GetDicomTagConstraints().GetConstraint(i); |
|
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5689
diff
changeset
|
595 if (constraint.GetLevel() == request_.GetLevel()) |
|
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integration tests are passing with ResourceFinder
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5689
diff
changeset
|
596 { |
|
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5689
diff
changeset
|
597 request_.SetRetrieveMainDicomTags(true); |
|
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5689
diff
changeset
|
598 } |
|
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integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
599 else if (IsResourceLevelAboveOrEqual(constraint.GetLevel(), request_.GetLevel())) |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
600 { |
|
5690
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integration tests are passing with ResourceFinder
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5689
diff
changeset
|
601 request_.GetParentSpecification(constraint.GetLevel()).SetRetrieveMainDicomTags(true); |
|
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parents:
5689
diff
changeset
|
602 } |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
603 else |
|
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
604 { |
|
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integration tests are passing with ResourceFinder
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5689
diff
changeset
|
605 LOG(WARNING) << "Executing a database lookup at level " << EnumerationToString(request_.GetLevel()) |
|
708952bd869c
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5689
diff
changeset
|
606 << " on main DICOM tag " << constraint.GetTag().Format() << " from an inferior level (" |
|
708952bd869c
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parents:
5689
diff
changeset
|
607 << EnumerationToString(constraint.GetLevel()) << "), this will return no result"; |
|
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diff
changeset
|
608 } |
|
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integration tests are passing with ResourceFinder
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5689
diff
changeset
|
609 |
|
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diff
changeset
|
610 if (IsComputedTag(constraint.GetTag())) |
|
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diff
changeset
|
611 { |
|
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parents:
5689
diff
changeset
|
612 // Sanity check |
|
5686
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changeset
|
613 throw OrthancException(ErrorCode_InternalError); |
|
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changeset
|
614 } |
|
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integrating DatabaseLookup into ResourceFinder
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changeset
|
615 } |
|
5692
7c11a71927a9
improved handling of limits
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parents:
5690
diff
changeset
|
616 |
|
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improved handling of limits
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parents:
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diff
changeset
|
617 UpdateRequestLimits(); |
|
5682
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started refactoring of ServerContext::Apply()
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diff
changeset
|
618 } |
|
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started refactoring of ServerContext::Apply()
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diff
changeset
|
619 |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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diff
changeset
|
620 |
|
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diff
changeset
|
621 void ResourceFinder::AddRequestedTag(const DicomTag& tag) |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
622 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
623 if (DicomMap::IsMainDicomTag(tag, ResourceType_Patient)) |
|
4690a0d2b01e
preliminary support of requestedTags
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5608
diff
changeset
|
624 { |
|
5620
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optimization as patient-level tags are copied at study level
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5619
diff
changeset
|
625 if (request_.GetLevel() == ResourceType_Patient) |
|
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diff
changeset
|
626 { |
| 5697 | 627 request_.SetRetrieveMainDicomTags(true); |
|
5620
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changeset
|
628 requestedPatientTags_.insert(tag); |
|
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diff
changeset
|
629 } |
|
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5619
diff
changeset
|
630 else |
|
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5619
diff
changeset
|
631 { |
|
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optimization as patient-level tags are copied at study level
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diff
changeset
|
632 /** |
|
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diff
changeset
|
633 * This comes from the fact that patient-level tags are copied |
|
4bfd885fb45f
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diff
changeset
|
634 * at the study level, as implemented by "ResourcesContent::AddResource()". |
|
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diff
changeset
|
635 **/ |
| 5697 | 636 requestedStudyTags_.insert(tag); |
| 637 | |
| 638 if (request_.GetLevel() == ResourceType_Study) | |
| 639 { | |
| 640 request_.SetRetrieveMainDicomTags(true); | |
| 641 } | |
| 642 else | |
| 643 { | |
| 644 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 645 } | |
| 646 | |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
647 requestedStudyTags_.insert(tag); |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
648 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
649 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
650 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
651 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
652 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Study)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
653 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
654 if (request_.GetLevel() == ResourceType_Patient) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
655 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
656 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
657 << " should only be read at the study, series, or instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
658 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
659 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
660 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
661 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
662 { |
| 5697 | 663 if (request_.GetLevel() == ResourceType_Study) |
| 664 { | |
| 665 request_.SetRetrieveMainDicomTags(true); | |
| 666 } | |
| 667 else | |
| 668 { | |
| 669 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 670 } | |
| 671 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
672 requestedStudyTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
673 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
674 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
675 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
676 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
677 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Series)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
678 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
679 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
680 request_.GetLevel() == ResourceType_Study) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
681 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
682 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
683 << " should only be read at the series or instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
684 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
685 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
686 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
687 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
688 { |
| 5697 | 689 if (request_.GetLevel() == ResourceType_Series) |
| 690 { | |
| 691 request_.SetRetrieveMainDicomTags(true); | |
| 692 } | |
| 693 else | |
| 694 { | |
| 695 request_.GetParentSpecification(ResourceType_Series).SetRetrieveMainDicomTags(true); | |
| 696 } | |
| 697 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
698 requestedSeriesTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
699 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
700 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
701 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
702 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
703 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Instance)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
704 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
705 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
706 request_.GetLevel() == ResourceType_Study || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
707 request_.GetLevel() == ResourceType_Series) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
708 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
709 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
710 << " should only be read at the instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
711 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
712 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
713 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
714 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
715 { |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
716 request_.SetRetrieveMainDicomTags(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
717 requestedInstanceTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
718 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
719 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
720 hasRequestedTags_ = true; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
721 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
722 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
723 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
724 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Study); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
725 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
726 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
727 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
728 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
729 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
730 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
731 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
732 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
733 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
734 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
735 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
736 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
737 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
738 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
739 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
740 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
741 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
742 else if (tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
743 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
744 ConfigureChildrenCountComputedTag(tag, ResourceType_Series, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
745 } |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
746 else if (tag == DICOM_TAG_SOP_CLASSES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
747 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
748 requestedComputedTags_.insert(tag); |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
749 hasRequestedTags_ = true; |
|
5676
b744a2cf408a
shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5674
diff
changeset
|
750 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_SopClassUid); |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
751 } |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
752 else if (tag == DICOM_TAG_MODALITIES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
753 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
754 requestedComputedTags_.insert(tag); |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
755 hasRequestedTags_ = true; |
|
5676
b744a2cf408a
shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5674
diff
changeset
|
756 request_.GetChildrenSpecification(ResourceType_Series).AddMainDicomTag(DICOM_TAG_MODALITY); |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
757 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
758 else if (tag == DICOM_TAG_INSTANCE_AVAILABILITY) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
759 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
760 requestedComputedTags_.insert(tag); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
761 hasRequestedTags_ = true; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
762 } |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
763 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
764 { |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
765 // This is neither a main DICOM tag, nor a computed DICOM tag: |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
766 // We will be forced to access the DICOM file anyway |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
767 requestedTagsFromFileStorage_.insert(tag); |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
768 |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
769 if (request_.GetLevel() != ResourceType_Instance) |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
770 { |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
771 request_.SetRetrieveOneInstanceIdentifier(true); |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
772 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
773 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
774 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
775 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
776 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
777 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
778 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
779 void ResourceFinder::AddRequestedTags(const std::set<DicomTag>& tags) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
780 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
781 for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
782 { |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
783 AddRequestedTag(*it); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
784 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
785 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
786 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
787 |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
788 static void InjectRequestedTags(DicomMap& requestedTags, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
789 std::set<DicomTag>& missingTags /* out */, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
790 const FindResponse::Resource& resource, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
791 ResourceType level, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
792 const std::set<DicomTag>& tags) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
793 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
794 if (!tags.empty()) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
795 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
796 DicomMap m; |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
797 resource.GetMainDicomTags(m, level); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
798 |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
799 for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
800 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
801 std::string value; |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
802 if (m.LookupStringValue(value, *it, false /* not binary */)) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
803 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
804 requestedTags.SetValue(*it, value, false /* not binary */); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
805 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
806 else |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
807 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
808 // This is the case where the Housekeeper should be run |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
809 missingTags.insert(*it); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
810 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
811 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
812 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
813 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
814 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
815 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
816 static void ReadMissingTagsFromStorageArea(DicomMap& requestedTags, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
817 ServerContext& context, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
818 const FindRequest& request, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
819 const FindResponse::Resource& resource, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
820 const std::set<DicomTag>& missingTags) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
821 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
822 OrthancConfiguration::ReaderLock lock; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
823 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
824 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
825 std::string missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
826 FromDcmtkBridge::FormatListOfTags(missings, missingTags); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
827 |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
828 LOG(WARNING) << "W001: Accessing DICOM tags from storage when accessing " |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
829 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
830 << ": " << missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
831 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
832 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
833 std::string instancePublicId; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
834 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
835 if (request.IsRetrieveOneInstanceIdentifier()) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
836 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
837 instancePublicId = resource.GetOneInstanceIdentifier(); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
838 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
839 else if (request.GetLevel() == ResourceType_Instance) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
840 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
841 instancePublicId = resource.GetIdentifier(); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
842 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
843 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
844 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
845 FindRequest requestDicomAttachment(request.GetLevel()); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
846 requestDicomAttachment.SetOrthancId(request.GetLevel(), resource.GetIdentifier()); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
847 requestDicomAttachment.SetRetrieveOneInstanceIdentifier(true); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
848 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
849 FindResponse responseDicomAttachment; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
850 context.GetIndex().ExecuteFind(responseDicomAttachment, requestDicomAttachment); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
851 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
852 if (responseDicomAttachment.GetSize() != 1 || |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
853 !responseDicomAttachment.GetResourceByIndex(0).HasOneInstanceIdentifier()) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
854 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
855 throw OrthancException(ErrorCode_InexistentFile); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
856 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
857 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
858 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
859 instancePublicId = responseDicomAttachment.GetResourceByIndex(0).GetOneInstanceIdentifier(); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
860 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
861 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
862 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
863 LOG(INFO) << "Will retrieve missing DICOM tags from instance: " << instancePublicId; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
864 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
865 // TODO-FIND: What do we do if the DICOM has been removed since the request? |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
866 // Do we fail, or do we skip the resource? |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
867 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
868 Json::Value tmpDicomAsJson; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
869 context.ReadDicomAsJson(tmpDicomAsJson, instancePublicId, missingTags /* ignoreTagLength */); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
870 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
871 DicomMap tmpDicomMap; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
872 tmpDicomMap.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
873 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
874 for (std::set<DicomTag>::const_iterator it = missingTags.begin(); it != missingTags.end(); ++it) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
875 { |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
876 assert(!requestedTags.HasTag(*it)); |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
877 if (tmpDicomMap.HasTag(*it)) |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
878 { |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
879 requestedTags.SetValue(*it, tmpDicomMap.GetValue(*it)); |
|
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parents:
5641
diff
changeset
|
880 } |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
881 else |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
882 { |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
883 requestedTags.SetNullValue(*it); // TODO-FIND: Is this compatible with Orthanc <= 1.12.3? |
|
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parents:
5641
diff
changeset
|
884 } |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
885 } |
|
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implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
886 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
887 |
|
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implemented computed tag: Instance Availability
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parents:
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diff
changeset
|
888 |
|
5682
fd4c5e064cbe
started refactoring of ServerContext::Apply()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
889 void ResourceFinder::Execute(FindResponse& response, |
|
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started refactoring of ServerContext::Apply()
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diff
changeset
|
890 ServerIndex& index) const |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
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5676
diff
changeset
|
891 { |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
892 index.ExecuteFind(response, request_); |
|
5682
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started refactoring of ServerContext::Apply()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
893 } |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5676
diff
changeset
|
894 |
|
fd4c5e064cbe
started refactoring of ServerContext::Apply()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5676
diff
changeset
|
895 |
|
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
896 void ResourceFinder::Execute(IVisitor& visitor, |
|
5621
732ec9feeea8
introduction of FindRequest::ChildrenRetrieveSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
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5620
diff
changeset
|
897 ServerContext& context) const |
| 5608 | 898 { |
| 899 FindResponse response; | |
| 900 context.GetIndex().ExecuteFind(response, request_); | |
| 901 | |
|
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|
902 bool complete; |
| 5693 | 903 |
| 904 switch (pagingMode_) | |
|
5688
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first implementation of database paging
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diff
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|
905 { |
| 5693 | 906 case PagingMode_FullDatabase: |
| 907 case PagingMode_ManualSkip: | |
| 908 complete = true; | |
| 909 break; | |
| 910 | |
| 911 case PagingMode_FullManual: | |
| 912 complete = (databaseLimits_ == 0 || | |
| 913 response.GetSize() <= databaseLimits_); | |
| 914 break; | |
| 915 | |
| 916 default: | |
| 917 throw OrthancException(ErrorCode_InternalError); | |
|
5688
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|
918 } |
|
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diff
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|
919 |
|
5690
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diff
changeset
|
920 if (lookup_.get() != NULL) |
|
5688
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first implementation of database paging
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diff
changeset
|
921 { |
|
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first implementation of database paging
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diff
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|
922 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << response.GetSize(); |
|
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diff
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|
923 } |
|
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first implementation of database paging
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diff
changeset
|
924 |
|
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first implementation of database paging
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diff
changeset
|
925 size_t countResults = 0; |
|
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diff
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|
926 size_t skipped = 0; |
| 5608 | 927 |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
928 for (size_t i = 0; i < response.GetSize(); i++) |
| 5608 | 929 { |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
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diff
changeset
|
930 const FindResponse::Resource& resource = response.GetResourceByIndex(i); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
931 |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
932 DicomMap requestedTags; |
|
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integrating DatabaseLookup into ResourceFinder
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diff
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|
933 |
|
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integrating DatabaseLookup into ResourceFinder
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diff
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|
934 if (hasRequestedTags_) |
| 5608 | 935 { |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
936 InjectComputedTags(requestedTags, resource); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
937 |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
938 std::set<DicomTag> missingTags = requestedTagsFromFileStorage_; |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
939 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Patient, requestedPatientTags_); |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
940 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Study, requestedStudyTags_); |
|
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integrating DatabaseLookup into ResourceFinder
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diff
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|
941 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Series, requestedSeriesTags_); |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
942 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Instance, requestedInstanceTags_); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
943 |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
944 if (!missingTags.empty()) |
|
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diff
changeset
|
945 { |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
946 if (!allowStorageAccess_) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
947 { |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
948 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
949 "Cannot add missing requested tags, as access to file storage is disallowed"); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
950 } |
|
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integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
951 else |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
952 { |
|
5686
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integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
953 ReadMissingTagsFromStorageArea(requestedTags, context, request_, resource, missingTags); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
954 } |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
955 } |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
956 } |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
957 |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
958 bool match = true; |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
959 |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
960 if (lookup_.get() != NULL) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
961 { |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
962 DicomMap tags; |
|
5690
708952bd869c
integration tests are passing with ResourceFinder
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parents:
5689
diff
changeset
|
963 resource.GetAllMainDicomTags(tags); |
|
5686
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integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
964 tags.Merge(requestedTags); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
965 match = lookup_->IsMatch(tags); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
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diff
changeset
|
966 } |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
967 |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
968 if (match) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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parents:
5682
diff
changeset
|
969 { |
| 5693 | 970 if (pagingMode_ == PagingMode_FullDatabase) |
|
5688
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first implementation of database paging
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parents:
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diff
changeset
|
971 { |
|
5696
0f8b6214308a
preparing to use ResourceFinder in OrthancFindRequestHandler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5694
diff
changeset
|
972 visitor.Apply(resource, requestedTags); |
|
5688
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first implementation of database paging
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parents:
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diff
changeset
|
973 } |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
974 else |
|
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first implementation of database paging
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parents:
5686
diff
changeset
|
975 { |
| 5693 | 976 if (hasLimitsSince_ && |
|
5688
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first implementation of database paging
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parents:
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diff
changeset
|
977 skipped < limitsSince_) |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
978 { |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
979 skipped++; |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
980 } |
| 5693 | 981 else if (hasLimitsCount_ && |
|
5688
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parents:
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diff
changeset
|
982 countResults >= limitsCount_) |
|
d0a264b803f1
first implementation of database paging
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diff
changeset
|
983 { |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
984 // Too many results, don't mark as complete |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
985 complete = false; |
|
d0a264b803f1
first implementation of database paging
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diff
changeset
|
986 break; |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
987 } |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
988 else |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
989 { |
|
5696
0f8b6214308a
preparing to use ResourceFinder in OrthancFindRequestHandler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5694
diff
changeset
|
990 visitor.Apply(resource, requestedTags); |
|
5688
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first implementation of database paging
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parents:
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diff
changeset
|
991 countResults++; |
|
d0a264b803f1
first implementation of database paging
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diff
changeset
|
992 } |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
993 } |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
994 } |
|
d0a264b803f1
first implementation of database paging
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parents:
5686
diff
changeset
|
995 } |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
996 |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
997 if (complete) |
|
d0a264b803f1
first implementation of database paging
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parents:
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diff
changeset
|
998 { |
|
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diff
changeset
|
999 visitor.MarkAsComplete(); |
|
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diff
changeset
|
1000 } |
|
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diff
changeset
|
1001 } |
|
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diff
changeset
|
1002 |
|
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parents:
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diff
changeset
|
1003 |
|
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parents:
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diff
changeset
|
1004 void ResourceFinder::Execute(Json::Value& target, |
|
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diff
changeset
|
1005 ServerContext& context) const |
|
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diff
changeset
|
1006 { |
|
d0a264b803f1
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parents:
5686
diff
changeset
|
1007 class Visitor : public IVisitor |
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1008 { |
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1009 private: |
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1010 const ResourceFinder& that_; |
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1011 ServerIndex& index_; |
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1012 Json::Value& target_; |
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1013 bool hasRequestedTags_; |
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1014 |
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1015 public: |
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1016 Visitor(const ResourceFinder& that, |
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1017 ServerIndex& index, |
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1018 Json::Value& target, |
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1019 bool hasRequestedTags) : |
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1020 that_(that), |
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1021 index_(index), |
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1022 target_(target), |
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1023 hasRequestedTags_(hasRequestedTags) |
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1024 { |
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1025 } |
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1026 |
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1027 virtual void Apply(const FindResponse::Resource& resource, |
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1028 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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1029 { |
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1030 if (that_.expand_) |
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1031 { |
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1032 Json::Value item; |
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1033 that_.Expand(item, resource, index_); |
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1034 |
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1035 if (hasRequestedTags_) |
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1036 { |
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1037 static const char* const REQUESTED_TAGS = "RequestedTags"; |
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1038 item[REQUESTED_TAGS] = Json::objectValue; |
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1039 FromDcmtkBridge::ToJson(item[REQUESTED_TAGS], requestedTags, that_.format_); |
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1040 } |
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1041 |
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1042 target_.append(item); |
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1043 } |
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1044 else |
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1045 { |
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1046 target_.append(resource.GetIdentifier()); |
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1047 } |
| 5608 | 1048 } |
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1049 |
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1050 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1051 { |
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1052 } |
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1053 }; |
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1054 |
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1055 target = Json::arrayValue; |
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1056 |
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1057 Visitor visitor(*this, context.GetIndex(), target, hasRequestedTags_); |
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1058 Execute(visitor, context); |
| 5608 | 1059 } |
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1060 |
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1061 |
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1062 bool ResourceFinder::ExecuteOneResource(Json::Value& target, |
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1063 ServerContext& context) const |
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1064 { |
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1065 Json::Value answer; |
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1066 Execute(answer, context); |
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1067 |
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1068 if (answer.type() != Json::arrayValue) |
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1069 { |
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1070 throw OrthancException(ErrorCode_InternalError); |
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1071 } |
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1072 else if (answer.size() > 1) |
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1073 { |
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1074 throw OrthancException(ErrorCode_DatabasePlugin); |
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1075 } |
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1076 else if (answer.empty()) |
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1077 { |
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1078 // Inexistent resource (or was deleted between the first and second phases) |
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1079 return false; |
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1080 } |
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1081 else |
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1082 { |
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1083 target = answer[0]; |
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1084 return true; |
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1085 } |
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1086 } |
| 5608 | 1087 } |