Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 4844:55e8fb8e8028
tagging a pre-release of the Orthanc framework for WSI 1.1
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 07 Dec 2021 14:01:17 +0100 |
parents | 7053502fbf97 |
children | 43e613a7756b |
rev | line source |
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786 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
786 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
786 | 12 * |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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16 * Lesser General Public License for more details. |
786 | 17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
786 | 21 **/ |
22 | |
23 | |
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24 #include "../PrecompiledHeaders.h" |
786 | 25 #include "DicomModification.h" |
26 | |
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27 #include "../Compatibility.h" |
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28 #include "../Logging.h" |
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29 #include "../OrthancException.h" |
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30 #include "../SerializationToolbox.h" |
790 | 31 #include "FromDcmtkBridge.h" |
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32 #include "ITagVisitor.h" |
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34 #include <memory> // For std::unique_ptr |
795 | 35 |
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36 |
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37 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 = |
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38 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"; |
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39 |
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40 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c = |
2314 | 41 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile"; |
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42 |
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43 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b = |
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44 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile"; |
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45 |
786 | 46 namespace Orthanc |
47 { | |
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48 namespace |
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49 { |
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50 enum TagOperation |
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51 { |
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52 TagOperation_Keep, |
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53 TagOperation_Remove |
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54 }; |
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55 } |
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56 |
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57 |
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58 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom, |
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59 uint16_t groupTo, |
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60 uint16_t elementFrom, |
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61 uint16_t elementTo) : |
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62 groupFrom_(groupFrom), |
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63 groupTo_(groupTo), |
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64 elementFrom_(elementFrom), |
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65 elementTo_(elementTo) |
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66 { |
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67 } |
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68 |
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69 |
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70 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const |
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71 { |
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72 return (tag.GetGroup() >= groupFrom_ && |
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73 tag.GetGroup() <= groupTo_ && |
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74 tag.GetElement() >= elementFrom_ && |
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75 tag.GetElement() <= elementTo_); |
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76 } |
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77 |
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78 |
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79 class DicomModification::RelationshipsVisitor : public ITagVisitor |
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80 { |
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81 private: |
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82 DicomModification& that_; |
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83 |
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84 // This method is only applicable to first-level tags |
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85 bool IsManuallyModified(const DicomTag& tag) const |
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86 { |
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87 return (that_.IsCleared(tag) || |
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88 that_.IsRemoved(tag) || |
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89 that_.IsReplaced(tag)); |
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90 } |
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91 |
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92 bool IsKeptSequence(const std::vector<DicomTag>& parentTags, |
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93 const std::vector<size_t>& parentIndexes, |
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94 const DicomTag& tag) |
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95 { |
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96 for (DicomModification::ListOfPaths::const_iterator |
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97 it = that_.keepSequences_.begin(); it != that_.keepSequences_.end(); ++it) |
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98 { |
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99 if (DicomPath::IsMatch(*it, parentTags, parentIndexes, tag)) |
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100 { |
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101 return true; |
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102 } |
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103 } |
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104 |
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105 return false; |
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106 } |
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107 |
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108 Action GetDefaultAction(const std::vector<DicomTag>& parentTags, |
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109 const std::vector<size_t>& parentIndexes, |
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110 const DicomTag& tag) |
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111 { |
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112 if (parentTags.empty() || |
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113 !that_.isAnonymization_) |
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114 { |
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115 // Don't interfere with first-level tags or with modification |
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116 return Action_None; |
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117 } |
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118 else if (IsKeptSequence(parentTags, parentIndexes, tag)) |
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119 { |
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120 return Action_None; |
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121 } |
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122 else if (that_.ArePrivateTagsRemoved() && |
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123 tag.IsPrivate()) |
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124 { |
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125 // New in Orthanc 1.9.5 |
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126 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ |
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127 return Action_Remove; |
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128 } |
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129 else if (that_.IsCleared(tag) || |
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130 that_.IsRemoved(tag)) |
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131 { |
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132 // New in Orthanc 1.9.5 |
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133 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ |
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134 return Action_Remove; |
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135 } |
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136 else |
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137 { |
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138 return Action_None; |
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139 } |
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140 } |
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141 |
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142 public: |
4200 | 143 explicit RelationshipsVisitor(DicomModification& that) : |
144 that_(that) | |
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145 { |
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146 } |
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147 |
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148 virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags, |
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149 const std::vector<size_t>& parentIndexes, |
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150 const DicomTag& tag, |
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151 ValueRepresentation vr) ORTHANC_OVERRIDE |
3195 | 152 { |
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153 return GetDefaultAction(parentTags, parentIndexes, tag); |
3195 | 154 } |
155 | |
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156 virtual Action VisitSequence(const std::vector<DicomTag>& parentTags, |
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157 const std::vector<size_t>& parentIndexes, |
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158 const DicomTag& tag, |
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159 size_t countItems) ORTHANC_OVERRIDE |
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160 { |
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161 return GetDefaultAction(parentTags, parentIndexes, tag); |
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162 } |
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163 |
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164 virtual Action VisitBinary(const std::vector<DicomTag>& parentTags, |
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165 const std::vector<size_t>& parentIndexes, |
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166 const DicomTag& tag, |
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167 ValueRepresentation vr, |
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168 const void* data, |
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169 size_t size) ORTHANC_OVERRIDE |
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170 { |
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171 return GetDefaultAction(parentTags, parentIndexes, tag); |
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172 } |
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173 |
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174 virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags, |
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175 const std::vector<size_t>& parentIndexes, |
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176 const DicomTag& tag, |
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177 ValueRepresentation vr, |
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178 const std::vector<int64_t>& values) ORTHANC_OVERRIDE |
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179 { |
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180 return GetDefaultAction(parentTags, parentIndexes, tag); |
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181 } |
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182 |
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183 virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags, |
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184 const std::vector<size_t>& parentIndexes, |
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185 const DicomTag& tag, |
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186 ValueRepresentation vr, |
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187 const std::vector<double>& value) ORTHANC_OVERRIDE |
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188 { |
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189 return GetDefaultAction(parentTags, parentIndexes, tag); |
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190 } |
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191 |
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192 virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags, |
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193 const std::vector<size_t>& parentIndexes, |
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194 const DicomTag& tag, |
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195 const std::vector<DicomTag>& value) ORTHANC_OVERRIDE |
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196 { |
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197 return GetDefaultAction(parentTags, parentIndexes, tag); |
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198 } |
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199 |
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200 virtual Action VisitString(std::string& newValue, |
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201 const std::vector<DicomTag>& parentTags, |
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202 const std::vector<size_t>& parentIndexes, |
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203 const DicomTag& tag, |
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204 ValueRepresentation vr, |
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205 const std::string& value) ORTHANC_OVERRIDE |
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206 { |
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207 /** |
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208 * Note that all the tags in "uids_" have the VR UI (unique |
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209 * identifier), and are considered as strings. |
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210 * |
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211 * Also, the tags "SOP Instance UID", "Series Instance UID" and |
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212 * "Study Instance UID" are *never* included in "uids_", as they |
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213 * are separately handed by "MapDicomTags()". |
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214 **/ |
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215 |
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216 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end()); |
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217 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end()); |
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218 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end()); |
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219 |
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220 if (parentTags.empty()) |
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221 { |
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222 // We are on a first-level tag |
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223 if (that_.uids_.find(tag) != that_.uids_.end() && |
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224 !IsManuallyModified(tag)) |
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225 { |
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226 if (tag == DICOM_TAG_PATIENT_ID || |
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227 tag == DICOM_TAG_PATIENT_NAME) |
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228 { |
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229 assert(vr == ValueRepresentation_LongString || |
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230 vr == ValueRepresentation_PersonName); |
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231 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient); |
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232 } |
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233 else |
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234 { |
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235 // This is a first-level UID tag that must be anonymized |
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236 assert(vr == ValueRepresentation_UniqueIdentifier || |
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237 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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238 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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239 } |
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240 |
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241 return Action_Replace; |
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242 } |
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243 else |
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244 { |
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245 return Action_None; |
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246 } |
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247 } |
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248 else |
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249 { |
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250 // We are within a sequence |
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251 |
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252 if (IsKeptSequence(parentTags, parentIndexes, tag)) |
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253 { |
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254 // New in Orthanc 1.9.4 - Solves issue LSD-629 |
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255 return Action_None; |
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256 } |
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257 |
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258 if (that_.isAnonymization_) |
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259 { |
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260 // New in Orthanc 1.9.5, similar to "GetDefaultAction()" |
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261 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ |
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262 if (that_.ArePrivateTagsRemoved() && |
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263 tag.IsPrivate()) |
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264 { |
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265 return Action_Remove; |
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266 } |
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267 else if (that_.IsRemoved(tag)) |
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268 { |
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269 return Action_Remove; |
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270 } |
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271 else if (that_.IsCleared(tag)) |
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272 { |
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273 // This is different from "GetDefaultAction()", because we know how to clear string tags |
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274 newValue.clear(); |
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275 return Action_Replace; |
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276 } |
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277 } |
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278 |
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279 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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280 { |
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281 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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282 return Action_Replace; |
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283 } |
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284 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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285 { |
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286 newValue = that_.MapDicomIdentifier(value, ResourceType_Series); |
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287 return Action_Replace; |
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288 } |
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289 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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290 { |
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291 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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292 return Action_Replace; |
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293 } |
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294 else if (that_.uids_.find(tag) != that_.uids_.end()) |
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295 { |
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296 if (tag == DICOM_TAG_PATIENT_ID || |
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297 tag == DICOM_TAG_PATIENT_NAME) |
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298 { |
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299 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient); |
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300 } |
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301 else |
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302 { |
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303 assert(vr == ValueRepresentation_UniqueIdentifier || |
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304 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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305 |
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306 if (parentTags.size() == 2 && |
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307 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE && |
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308 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE && |
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309 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID) |
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310 { |
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311 /** |
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312 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually |
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313 * referencing a StudyInstanceUID !! (observed in many |
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314 * data sets including: |
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315 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017) |
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316 * Tested in "test_anonymize_relationships_5". Introduced |
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317 * in: https://hg.orthanc-server.com/orthanc/rev/3513 |
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318 **/ |
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319 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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320 } |
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321 else |
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322 { |
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323 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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324 } |
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325 } |
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326 |
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327 return Action_Replace; |
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328 } |
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329 else |
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330 { |
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331 return Action_None; |
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332 } |
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333 } |
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334 } |
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335 |
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336 void RemoveRelationships(ParsedDicomFile& dicom) const |
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337 { |
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338 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it) |
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339 { |
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340 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID && |
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341 *it != DICOM_TAG_SERIES_INSTANCE_UID && |
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342 *it != DICOM_TAG_SOP_INSTANCE_UID); |
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343 |
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344 if (!IsManuallyModified(*it)) |
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345 { |
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346 dicom.Remove(*it); |
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347 } |
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348 } |
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349 |
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350 // The only two sequences with to the "X/Z/U*" rule in the |
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351 // basic profile. They were already present in Orthanc 1.9.3. |
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352 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE)) |
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353 { |
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354 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE); |
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355 } |
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356 |
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357 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE)) |
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358 { |
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359 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE); |
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360 } |
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361 } |
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362 }; |
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363 |
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364 |
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365 void DicomModification::CancelReplacement(const DicomTag& tag) |
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366 { |
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367 Replacements::iterator it = replacements_.find(tag); |
2323 | 368 |
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369 if (it != replacements_.end()) |
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370 { |
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371 assert(it->second != NULL); |
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372 delete it->second; |
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373 replacements_.erase(it); |
2323 | 374 } |
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375 } |
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376 |
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377 |
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378 void DicomModification::ReplaceInternal(const DicomTag& tag, |
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379 const Json::Value& value) |
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380 { |
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381 Replacements::iterator it = replacements_.find(tag); |
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382 |
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383 if (it != replacements_.end()) |
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384 { |
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385 assert(it->second != NULL); |
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386 delete it->second; |
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387 it->second = NULL; // In the case of an exception during the clone |
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388 it->second = new Json::Value(value); // Clone |
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389 } |
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390 else |
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391 { |
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392 replacements_[tag] = new Json::Value(value); // Clone |
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393 } |
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394 } |
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395 |
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396 |
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397 void DicomModification::ClearReplacements() |
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398 { |
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399 for (Replacements::iterator it = replacements_.begin(); |
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400 it != replacements_.end(); ++it) |
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401 { |
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402 assert(it->second != NULL); |
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403 delete it->second; |
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404 } |
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405 |
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406 replacements_.clear(); |
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407 |
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408 for (SequenceReplacements::iterator it = sequenceReplacements_.begin(); |
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409 it != sequenceReplacements_.end(); ++it) |
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410 { |
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411 assert(*it != NULL); |
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412 assert((*it)->GetPath().GetPrefixLength() > 0); |
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413 delete *it; |
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414 } |
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415 |
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416 sequenceReplacements_.clear(); |
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417 } |
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418 |
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419 |
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420 void DicomModification::MarkNotOrthancAnonymization() |
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421 { |
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422 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD); |
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423 |
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424 if (it != replacements_.end()) |
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425 { |
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426 assert(it->second != NULL); |
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427 |
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428 if (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 || |
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429 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c || |
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430 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b) |
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431 { |
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432 delete it->second; |
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433 replacements_.erase(it); |
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434 } |
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435 } |
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436 } |
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437 |
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438 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original, |
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439 const std::string& mapped, |
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440 ResourceType level) |
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441 { |
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442 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original)); |
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443 |
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444 if (previous == uidMap_.end()) |
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445 { |
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446 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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447 } |
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448 } |
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449 |
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450 std::string DicomModification::MapDicomIdentifier(const std::string& original, |
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451 ResourceType level) |
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452 { |
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453 const std::string stripped = Toolbox::StripSpaces(original); |
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454 |
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455 std::string mapped; |
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456 |
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457 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped)); |
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458 |
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459 if (previous == uidMap_.end()) |
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460 { |
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461 if (identifierGenerator_ == NULL) |
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462 { |
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463 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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464 } |
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465 else |
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466 { |
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467 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_)) |
2535
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468 { |
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469 throw OrthancException(ErrorCode_InternalError, |
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470 "Unable to generate an anonymized ID"); |
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471 } |
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472 } |
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473 |
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474 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped)); |
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475 } |
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Preservation of UID relationships while anonymizing
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476 else |
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477 { |
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478 mapped = previous->second; |
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479 } |
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480 |
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481 return mapped; |
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482 } |
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483 |
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484 |
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485 void DicomModification::MapDicomTags(ParsedDicomFile& dicom, |
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486 ResourceType level) |
786 | 487 { |
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488 std::unique_ptr<DicomTag> tag; |
786 | 489 |
490 switch (level) | |
491 { | |
788 | 492 case ResourceType_Study: |
786 | 493 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
494 break; | |
495 | |
788 | 496 case ResourceType_Series: |
786 | 497 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
498 break; | |
499 | |
788 | 500 case ResourceType_Instance: |
786 | 501 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID)); |
502 break; | |
503 | |
504 default: | |
505 throw OrthancException(ErrorCode_InternalError); | |
506 } | |
507 | |
508 std::string original; | |
4273
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tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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509 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag)) |
786 | 510 { |
511 original = ""; | |
512 } | |
513 | |
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514 std::string mapped = MapDicomIdentifier(original, level); |
786 | 515 |
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516 dicom.Replace(*tag, mapped, |
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517 false /* don't try and decode data URI scheme for UIDs */, |
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518 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
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519 } |
786 | 520 |
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diff
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521 |
2194
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diff
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|
522 DicomModification::DicomModification() : |
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523 removePrivateTags_(false), |
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524 level_(ResourceType_Instance), |
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diff
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|
525 allowManualIdentifiers_(true), |
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diff
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|
526 keepStudyInstanceUid_(false), |
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527 keepSeriesInstanceUid_(false), |
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|
528 keepSopInstanceUid_(false), |
2535
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diff
changeset
|
529 updateReferencedRelationships_(true), |
2721 | 530 isAnonymization_(false), |
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diff
changeset
|
531 //privateCreator_("PrivateCreator"), |
2535
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changeset
|
532 identifierGenerator_(NULL) |
786 | 533 { |
534 } | |
535 | |
1698
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536 DicomModification::~DicomModification() |
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537 { |
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538 ClearReplacements(); |
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539 } |
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|
540 |
787
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refactoring of anonymization/modification
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diff
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|
541 void DicomModification::Keep(const DicomTag& tag) |
786 | 542 { |
543 removals_.erase(tag); | |
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544 clearings_.erase(tag); |
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diff
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545 uids_.erase(tag); |
2323 | 546 |
4685
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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547 CancelReplacement(tag); |
991
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changeset
|
548 |
2194
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diff
changeset
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549 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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550 { |
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diff
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551 keepStudyInstanceUid_ = true; |
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diff
changeset
|
552 } |
2321
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warning message in DicomModification::Keep()
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diff
changeset
|
553 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
2194
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"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
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554 { |
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diff
changeset
|
555 keepSeriesInstanceUid_ = true; |
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"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
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diff
changeset
|
556 } |
3860
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allow Keeping the SOPInstanceUID in /instances/../modify
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|
557 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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allow Keeping the SOPInstanceUID in /instances/../modify
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|
558 { |
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changeset
|
559 keepSopInstanceUid_ = true; |
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560 } |
2321
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warning message in DicomModification::Keep()
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diff
changeset
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561 else if (tag.IsPrivate()) |
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warning message in DicomModification::Keep()
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562 { |
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warning message in DicomModification::Keep()
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diff
changeset
|
563 privateTagsToKeep_.insert(tag); |
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diff
changeset
|
564 } |
2194
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diff
changeset
|
565 |
1279
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More flexible /modify and /anonymize for single instance
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diff
changeset
|
566 MarkNotOrthancAnonymization(); |
786 | 567 } |
568 | |
569 void DicomModification::Remove(const DicomTag& tag) | |
570 { | |
571 removals_.insert(tag); | |
2310
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DicomModification::Clear()
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diff
changeset
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572 clearings_.erase(tag); |
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diff
changeset
|
573 uids_.erase(tag); |
2323 | 574 CancelReplacement(tag); |
2310
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changeset
|
575 privateTagsToKeep_.erase(tag); |
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changeset
|
576 |
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changeset
|
577 MarkNotOrthancAnonymization(); |
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|
578 } |
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579 |
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changeset
|
580 void DicomModification::Clear(const DicomTag& tag) |
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DicomModification::Clear()
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581 { |
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582 removals_.erase(tag); |
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changeset
|
583 clearings_.insert(tag); |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
584 uids_.erase(tag); |
2323 | 585 CancelReplacement(tag); |
991
2f76b92addd4
keep private tags during anonymization
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diff
changeset
|
586 privateTagsToKeep_.erase(tag); |
1279
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More flexible /modify and /anonymize for single instance
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diff
changeset
|
587 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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diff
changeset
|
588 MarkNotOrthancAnonymization(); |
786 | 589 } |
590 | |
591 bool DicomModification::IsRemoved(const DicomTag& tag) const | |
592 { | |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
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593 if (removals_.find(tag) != removals_.end()) |
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diff
changeset
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594 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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595 return true; |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
596 } |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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597 else |
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598 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
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599 for (RemovedRanges::const_iterator it = removedRanges_.begin(); |
4690 | 600 it != removedRanges_.end(); ++it) |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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601 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
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|
602 if (it->Contains(tag)) |
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diff
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603 { |
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604 return true; |
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605 } |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
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606 } |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
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607 |
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608 return false; |
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609 } |
786 | 610 } |
611 | |
2310
b7fba68747f6
DicomModification::Clear()
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diff
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612 bool DicomModification::IsCleared(const DicomTag& tag) const |
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DicomModification::Clear()
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613 { |
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DicomModification::Clear()
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614 return clearings_.find(tag) != clearings_.end(); |
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DicomModification::Clear()
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|
615 } |
b7fba68747f6
DicomModification::Clear()
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diff
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|
616 |
786 | 617 void DicomModification::Replace(const DicomTag& tag, |
1698
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DicomModification use Json::Value
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618 const Json::Value& value, |
1279
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diff
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|
619 bool safeForAnonymization) |
786 | 620 { |
2310
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DicomModification::Clear()
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diff
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621 clearings_.erase(tag); |
786 | 622 removals_.erase(tag); |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
623 uids_.erase(tag); |
991
2f76b92addd4
keep private tags during anonymization
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diff
changeset
|
624 privateTagsToKeep_.erase(tag); |
1698
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DicomModification use Json::Value
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625 ReplaceInternal(tag, value); |
1279
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626 |
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627 if (!safeForAnonymization) |
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628 { |
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629 MarkNotOrthancAnonymization(); |
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|
630 } |
786 | 631 } |
632 | |
1698
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DicomModification use Json::Value
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diff
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633 |
786 | 634 bool DicomModification::IsReplaced(const DicomTag& tag) const |
635 { | |
636 return replacements_.find(tag) != replacements_.end(); | |
637 } | |
638 | |
1698
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DicomModification use Json::Value
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639 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const |
786 | 640 { |
641 Replacements::const_iterator it = replacements_.find(tag); | |
642 | |
643 if (it == replacements_.end()) | |
644 { | |
645 throw OrthancException(ErrorCode_InexistentItem); | |
646 } | |
647 else | |
648 { | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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649 assert(it->second != NULL); |
1698
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650 return *it->second; |
786 | 651 } |
652 } | |
653 | |
1698
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DicomModification use Json::Value
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654 |
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DicomModification use Json::Value
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655 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const |
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DicomModification use Json::Value
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656 { |
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657 const Json::Value& json = GetReplacement(tag); |
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DicomModification use Json::Value
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658 |
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DicomModification use Json::Value
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659 if (json.type() != Json::stringValue) |
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diff
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660 { |
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DicomModification use Json::Value
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661 throw OrthancException(ErrorCode_BadParameterType); |
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DicomModification use Json::Value
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diff
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|
662 } |
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DicomModification use Json::Value
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diff
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663 else |
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DicomModification use Json::Value
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diff
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|
664 { |
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DicomModification use Json::Value
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diff
changeset
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665 return json.asString(); |
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DicomModification use Json::Value
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changeset
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666 } |
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diff
changeset
|
667 } |
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diff
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|
668 |
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DicomModification use Json::Value
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diff
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|
669 |
786 | 670 void DicomModification::SetRemovePrivateTags(bool removed) |
671 { | |
672 removePrivateTags_ = removed; | |
1279
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673 |
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674 if (!removed) |
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675 { |
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changeset
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676 MarkNotOrthancAnonymization(); |
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|
677 } |
786 | 678 } |
679 | |
4297 | 680 bool DicomModification::ArePrivateTagsRemoved() const |
681 { | |
682 return removePrivateTags_; | |
683 } | |
684 | |
788 | 685 void DicomModification::SetLevel(ResourceType level) |
786 | 686 { |
687 uidMap_.clear(); | |
688 level_ = level; | |
1279
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689 |
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|
690 if (level != ResourceType_Patient) |
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691 { |
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692 MarkNotOrthancAnonymization(); |
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changeset
|
693 } |
786 | 694 } |
695 | |
4297 | 696 ResourceType DicomModification::GetLevel() const |
697 { | |
698 return level_; | |
699 } | |
700 | |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
701 |
4678
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diff
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|
702 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids, |
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|
703 std::set<DicomTag>& removals, |
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|
704 const DicomTag& tag) |
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705 { |
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706 uids.insert(tag); |
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707 removals.erase(tag); // Necessary if unserializing a job from 1.9.3 |
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diff
changeset
|
708 } |
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diff
changeset
|
709 |
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diff
changeset
|
710 |
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diff
changeset
|
711 void DicomModification::SetupUidsFromOrthanc_1_9_3() |
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diff
changeset
|
712 { |
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diff
changeset
|
713 /** |
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diff
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|
714 * Values below come from the hardcoded UID of Orthanc 1.9.3 |
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diff
changeset
|
715 * in DicomModification::RelationshipsVisitor::VisitString() and |
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diff
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|
716 * DicomModification::RelationshipsVisitor::RemoveRelationships() |
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diff
changeset
|
717 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117 |
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diff
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|
718 **/ |
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diff
changeset
|
719 uids_.clear(); |
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diff
changeset
|
720 |
4693
45bce660ce3a
added routes for bulk anonymization/modification
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diff
changeset
|
721 // (*) "PatientID" and "PatientName" are handled as UIDs since Orthanc 1.9.4 |
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added routes for bulk anonymization/modification
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parents:
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diff
changeset
|
722 uids_.insert(DICOM_TAG_PATIENT_ID); |
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added routes for bulk anonymization/modification
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diff
changeset
|
723 uids_.insert(DICOM_TAG_PATIENT_NAME); |
45bce660ce3a
added routes for bulk anonymization/modification
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diff
changeset
|
724 |
4678
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diff
changeset
|
725 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008() |
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diff
changeset
|
726 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships() |
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diff
changeset
|
727 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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diff
changeset
|
728 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008() |
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diff
changeset
|
729 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008() |
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diff
changeset
|
730 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008() |
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diff
changeset
|
731 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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diff
changeset
|
732 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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diff
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|
733 } |
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diff
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|
734 |
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diff
changeset
|
735 |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
736 void DicomModification::SetupAnonymization2008() |
786 | 737 { |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
738 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
739 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
740 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
741 SetupUidsFromOrthanc_1_9_3(); |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
742 |
4678
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|
743 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
744 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply() |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
745 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
746 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
747 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
748 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
749 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
750 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
751 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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|
752 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
753 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
754 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
755 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
756 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
757 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
758 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
759 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description |
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diff
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|
760 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
761 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
762 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*) |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
763 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
764 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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changeset
|
765 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
766 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
767 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
768 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
769 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
770 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
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|
771 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
772 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
773 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
774 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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changeset
|
775 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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changeset
|
776 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
777 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
778 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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changeset
|
779 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply() |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
780 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply() |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
781 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
782 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
2e850edf03d6
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parents:
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diff
changeset
|
783 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
784 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
785 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
786 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
787 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
788 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3() |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
789 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
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parents:
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diff
changeset
|
790 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
786 | 791 |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
792 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
793 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
794 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
795 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
796 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
797 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
798 // Set the DeidentificationMethod tag |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
799 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008); |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
800 } |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
801 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
802 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
803 void DicomModification::SetupAnonymization2017c() |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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changeset
|
804 { |
2313
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2311
diff
changeset
|
805 /** |
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
806 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security |
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2311
diff
changeset
|
807 * and System Management Profiles), "basic profile" column. It was |
4675
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
808 * generated automatically by calling: |
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
809 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
810 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml" |
2313
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switch to anonymization according to DICOM 2017c
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diff
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|
811 **/ |
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
812 |
4676
caf963ee3de9
DicomModification_Anonymization2017c.impl.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
813 #include "DicomModification_Anonymization2017c.impl.h" |
2313
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switch to anonymization according to DICOM 2017c
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parents:
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diff
changeset
|
814 |
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
815 // Set the DeidentificationMethod tag |
d19e716b79fa
switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
816 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c); |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
817 } |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
818 |
4dc313b9a20a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 |
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Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
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diff
changeset
|
820 void DicomModification::SetupAnonymization2021b() |
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Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
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parents:
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diff
changeset
|
821 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
822 /** |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
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parents:
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diff
changeset
|
823 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
824 * and System Management Profiles), "basic profile" column. It was |
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825 * generated automatically by calling: |
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826 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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827 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml" |
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828 * |
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829 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a |
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830 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1 |
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831 **/ |
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832 |
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833 #include "DicomModification_Anonymization2021b.impl.h" |
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834 |
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835 // Set the DeidentificationMethod tag |
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836 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b); |
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837 } |
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838 |
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839 |
2309
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840 void DicomModification::SetupAnonymization(DicomVersion version) |
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841 { |
2721 | 842 isAnonymization_ = true; |
843 | |
2309
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844 removals_.clear(); |
2310
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845 clearings_.clear(); |
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846 removedRanges_.clear(); |
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847 uids_.clear(); |
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848 ClearReplacements(); |
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849 removePrivateTags_ = true; |
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850 level_ = ResourceType_Patient; |
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851 uidMap_.clear(); |
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852 privateTagsToKeep_.clear(); |
4685
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853 keepSequences_.clear(); |
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854 removeSequences_.clear(); |
2309
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855 |
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856 switch (version) |
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857 { |
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858 case DicomVersion_2008: |
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859 SetupAnonymization2008(); |
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860 break; |
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861 |
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862 case DicomVersion_2017c: |
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863 SetupAnonymization2017c(); |
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864 break; |
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865 |
4677
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866 case DicomVersion_2021b: |
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867 SetupAnonymization2021b(); |
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868 break; |
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869 |
2309
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870 default: |
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871 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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872 } |
786 | 873 |
874 // Set the PatientIdentityRemoved tag | |
1698
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875 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES"); |
786 | 876 |
877 // (*) Choose a random patient name and ID | |
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878 uids_.insert(DICOM_TAG_PATIENT_ID); |
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879 uids_.insert(DICOM_TAG_PATIENT_NAME); |
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880 |
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881 // Sanity check |
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882 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it) |
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883 { |
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884 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it); |
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885 if (*it == DICOM_TAG_PATIENT_ID) |
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886 { |
4696
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887 if (vr != ValueRepresentation_LongString && |
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888 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */) |
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889 { |
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|
890 throw OrthancException(ErrorCode_InternalError); |
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891 } |
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892 } |
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893 else if (*it == DICOM_TAG_PATIENT_NAME) |
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894 { |
4696
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895 if (vr != ValueRepresentation_PersonName && |
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896 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */) |
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897 { |
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898 throw OrthancException(ErrorCode_InternalError); |
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899 } |
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900 } |
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901 else if (vr != ValueRepresentation_UniqueIdentifier && |
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902 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */) |
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903 { |
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904 throw OrthancException(ErrorCode_InternalError); |
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905 } |
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906 } |
786 | 907 } |
908 | |
909 void DicomModification::Apply(ParsedDicomFile& toModify) | |
910 { | |
911 // Check the request | |
788 | 912 assert(ResourceType_Patient + 1 == ResourceType_Study && |
913 ResourceType_Study + 1 == ResourceType_Series && | |
914 ResourceType_Series + 1 == ResourceType_Instance); | |
786 | 915 |
916 if (IsRemoved(DICOM_TAG_PATIENT_ID) || | |
917 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) || | |
918 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) || | |
919 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID)) | |
920 { | |
921 throw OrthancException(ErrorCode_BadRequest); | |
922 } | |
1160
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923 |
786 | 924 |
1279
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925 // Sanity checks at the patient level |
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|
926 bool isReplacedPatientId = (IsReplaced(DICOM_TAG_PATIENT_ID) || |
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927 uids_.find(DICOM_TAG_PATIENT_ID) != uids_.end()); |
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928 |
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929 if (level_ == ResourceType_Patient && !isReplacedPatientId) |
786 | 930 { |
2954
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931 throw OrthancException(ErrorCode_BadRequest, |
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|
932 "When modifying a patient, her PatientID is required to be modified"); |
786 | 933 } |
934 | |
1279
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935 if (!allowManualIdentifiers_) |
1160
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diff
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936 { |
1279
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937 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
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938 { |
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939 throw OrthancException(ErrorCode_BadRequest, |
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940 "When modifying a patient, the StudyInstanceUID cannot be manually modified"); |
1279
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941 } |
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942 |
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943 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
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944 { |
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945 throw OrthancException(ErrorCode_BadRequest, |
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diff
changeset
|
946 "When modifying a patient, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
947 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
948 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
949 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
950 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
951 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
952 "When modifying a patient, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
953 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
954 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
955 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
956 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
957 // Sanity checks at the study level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
958 if (level_ == ResourceType_Study && isReplacedPatientId) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
959 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
960 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
961 "When modifying a study, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
962 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
963 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
964 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
965 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
966 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
967 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
968 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
969 "When modifying a study, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
970 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
971 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
972 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
973 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
974 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
975 "When modifying a study, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
976 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
977 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
978 |
786 | 979 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
980 // Sanity checks at the series level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
981 if (level_ == ResourceType_Series && isReplacedPatientId) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
982 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
983 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
984 "When modifying a series, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
985 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
986 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
987 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 988 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
989 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
990 "When modifying a series, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
991 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
992 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
993 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
994 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
995 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
996 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
997 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
998 "When modifying a series, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
999 } |
786 | 1000 } |
1001 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1002 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1003 // Sanity checks at the instance level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
1004 if (level_ == ResourceType_Instance && isReplacedPatientId) |
786 | 1005 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1006 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1007 "When modifying an instance, the parent PatientID cannot be manually modified"); |
786 | 1008 } |
1009 | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1010 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1011 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1012 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1013 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1014 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1015 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1016 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1017 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1018 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1019 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1020 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1021 |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1022 // (0) Create a summary of the source file, if a custom generator |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1023 // is provided |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1024 if (identifierGenerator_ != NULL) |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1025 { |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4119
diff
changeset
|
1026 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH); |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1027 } |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1028 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1029 // (1) Make sure the relationships are updated with the ids that we force too |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1030 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1031 if (isAnonymization_ && updateReferencedRelationships_) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1032 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1033 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1034 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1035 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1036 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
1037 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1038 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1039 } |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
1040 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1041 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1042 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1043 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1044 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
1045 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1046 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1047 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1048 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1049 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1050 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1051 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1052 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
1053 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1054 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1055 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1056 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1057 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1058 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1059 // (2) Remove the private tags, if need be |
786 | 1060 if (removePrivateTags_) |
1061 { | |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
1062 toModify.RemovePrivateTags(privateTagsToKeep_); |
786 | 1063 } |
1064 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1065 // (3) Clear the tags specified by the user |
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1066 for (SetOfTags::const_iterator it = clearings_.begin(); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1067 it != clearings_.end(); ++it) |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1068 { |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1069 toModify.Clear(*it, true /* only clear if the tag exists in the original file */); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1070 } |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
1071 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1072 // (4) Remove the tags specified by the user |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
1073 for (SetOfTags::const_iterator it = removals_.begin(); |
786 | 1074 it != removals_.end(); ++it) |
1075 { | |
1076 toModify.Remove(*it); | |
1077 } | |
1078 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1079 // (5) Replace the tags |
786 | 1080 for (Replacements::const_iterator it = replacements_.begin(); |
1081 it != replacements_.end(); ++it) | |
1082 { | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1083 assert(it->second != NULL); |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1084 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1085 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
786 | 1086 } |
1087 | |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1088 // (6) Update the DICOM identifiers |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1089 if (level_ <= ResourceType_Study && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1090 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 1091 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1092 if (keepStudyInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1093 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1094 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1095 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1096 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1097 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1098 MapDicomTags(toModify, ResourceType_Study); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1099 } |
786 | 1100 } |
1101 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1102 if (level_ <= ResourceType_Series && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1103 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
786 | 1104 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1105 if (keepSeriesInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1106 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1107 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1108 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1109 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1110 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1111 MapDicomTags(toModify, ResourceType_Series); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1112 } |
786 | 1113 } |
1114 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1115 if (level_ <= ResourceType_Instance && // Always true |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1116 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
786 | 1117 { |
3860
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1118 if (keepSopInstanceUid_) |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1119 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1120 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!"; |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1121 } |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1122 else |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1123 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1124 MapDicomTags(toModify, ResourceType_Instance); |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1125 } |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1126 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1127 |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1128 // (7) Update the "referenced" relationships in the case of an anonymization |
2721 | 1129 if (isAnonymization_) |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1130 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1131 RelationshipsVisitor visitor(*this); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1132 |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1133 if (updateReferencedRelationships_) |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1134 { |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
1135 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor); |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1136 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1137 else |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1138 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1139 visitor.RemoveRelationships(toModify); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1140 } |
786 | 1141 } |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1142 |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1143 // (8) New in Orthanc 1.9.4: Apply modifications to subsequences |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1144 for (ListOfPaths::const_iterator it = removeSequences_.begin(); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1145 it != removeSequences_.end(); ++it) |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1146 { |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1147 assert(it->GetPrefixLength() > 0); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1148 toModify.RemovePath(*it); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1149 } |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1150 |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1151 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1152 it != sequenceReplacements_.end(); ++it) |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1153 { |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1154 assert(*it != NULL); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1155 assert((*it)->GetPath().GetPrefixLength() > 0); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1156 toModify.ReplacePath((*it)->GetPath(), (*it)->GetValue(), true /* decode data URI scheme */, |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1157 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1158 } |
786 | 1159 } |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1160 |
4297 | 1161 void DicomModification::SetAllowManualIdentifiers(bool check) |
1162 { | |
1163 allowManualIdentifiers_ = check; | |
1164 } | |
1165 | |
1166 bool DicomModification::AreAllowManualIdentifiers() const | |
1167 { | |
1168 return allowManualIdentifiers_; | |
1169 } | |
1170 | |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1171 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1172 static bool IsDatabaseKey(const DicomTag& tag) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1173 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1174 return (tag == DICOM_TAG_PATIENT_ID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1175 tag == DICOM_TAG_STUDY_INSTANCE_UID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1176 tag == DICOM_TAG_SERIES_INSTANCE_UID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1177 tag == DICOM_TAG_SOP_INSTANCE_UID); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1178 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1179 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1180 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1181 static void ParseListOfTags(DicomModification& target, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1182 const Json::Value& query, |
4737
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
1183 TagOperation operation, |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1184 bool force) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1185 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1186 if (!query.isArray()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1187 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1188 throw OrthancException(ErrorCode_BadRequest); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1189 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1190 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1191 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1192 { |
2844
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
1193 if (query[i].type() != Json::stringValue) |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
1194 { |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
1195 throw OrthancException(ErrorCode_BadRequest); |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
1196 } |
99863d6245b2
New URI: "/studies/.../split" to split a study
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1197 |
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1198 std::string name = query[i].asString(); |
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1199 |
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1200 const DicomPath path(DicomPath::Parse(name)); |
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1201 |
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1202 if (path.GetPrefixLength() == 0 && |
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1203 !force && |
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1204 IsDatabaseKey(path.GetFinalTag())) |
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1205 { |
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1206 throw OrthancException(ErrorCode_BadRequest, |
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1207 "Marking tag \"" + name + "\" as to be " + |
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1208 (operation == TagOperation_Keep ? "kept" : "removed") + |
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1209 " requires the \"Force\" option to be set to true"); |
2519
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1210 } |
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1211 |
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1212 switch (operation) |
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1213 { |
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1214 case TagOperation_Keep: |
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1215 target.Keep(path); |
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1216 LOG(TRACE) << "Keep: " << name << " = " << path.Format(); |
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1217 break; |
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1218 |
4737
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1219 case TagOperation_Remove: |
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1220 target.Remove(path); |
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1221 LOG(TRACE) << "Remove: " << name << " = " << path.Format(); |
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1222 break; |
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1223 |
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1224 default: |
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1225 throw OrthancException(ErrorCode_InternalError); |
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1226 } |
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1227 } |
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1228 } |
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1229 |
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1230 |
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1231 static void ParseReplacements(DicomModification& target, |
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1232 const Json::Value& replacements, |
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1233 bool force) |
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1234 { |
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1235 if (!replacements.isObject()) |
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1236 { |
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1237 throw OrthancException(ErrorCode_BadRequest); |
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1238 } |
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1239 |
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1240 Json::Value::Members members = replacements.getMemberNames(); |
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1241 for (size_t i = 0; i < members.size(); i++) |
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1242 { |
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|
1243 const std::string& name = members[i]; |
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1244 const Json::Value& value = replacements[name]; |
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1245 |
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1246 const DicomPath path(DicomPath::Parse(name)); |
2519
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1247 |
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1248 if (path.GetPrefixLength() == 0 && |
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1249 !force && |
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1250 IsDatabaseKey(path.GetFinalTag())) |
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1251 { |
2954
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1252 throw OrthancException(ErrorCode_BadRequest, |
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1253 "Marking tag \"" + name + "\" as to be replaced " + |
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|
1254 "requires the \"Force\" option to be set to true"); |
2519
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1255 } |
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1256 |
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|
1257 target.Replace(path, value, false /* not safe for anonymization */); |
2519
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1258 |
4687
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|
1259 LOG(TRACE) << "Replace: " << name << " = " << path.Format() |
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1260 << " by: " << value.toStyledString(); |
2519
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1261 } |
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1262 } |
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|
1263 |
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1264 |
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1265 static bool GetBooleanValue(const std::string& member, |
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1266 const Json::Value& json, |
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1267 bool defaultValue) |
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1268 { |
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1269 if (!json.isMember(member)) |
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1270 { |
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1271 return defaultValue; |
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1272 } |
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1273 else if (json[member].type() == Json::booleanValue) |
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1274 { |
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1275 return json[member].asBool(); |
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1276 } |
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1277 else |
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1278 { |
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1279 throw OrthancException(ErrorCode_BadFileFormat, |
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|
1280 "Member \"" + member + "\" should be a Boolean value"); |
2519
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1281 } |
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1282 } |
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1283 |
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1284 |
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|
1285 void DicomModification::ParseModifyRequest(const Json::Value& request) |
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1286 { |
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1287 if (!request.isObject()) |
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1288 { |
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1289 throw OrthancException(ErrorCode_BadFileFormat); |
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1290 } |
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1291 |
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1292 bool force = GetBooleanValue("Force", request, false); |
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1293 |
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1294 if (GetBooleanValue("RemovePrivateTags", request, false)) |
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1295 { |
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1296 SetRemovePrivateTags(true); |
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1297 } |
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1298 |
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1299 if (request.isMember("Remove")) |
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1300 { |
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1301 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1302 } |
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1303 |
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1304 if (request.isMember("Replace")) |
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|
1305 { |
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1306 ParseReplacements(*this, request["Replace"], force); |
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1307 } |
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1308 |
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1309 // The "Keep" operation only makes sense for the tags |
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1310 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid |
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1311 // this feature as much as possible, as this breaks the DICOM |
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1312 // model of the real world, except if you know exactly what |
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1313 // you're doing! |
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1314 if (request.isMember("Keep")) |
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1315 { |
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1316 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1317 } |
3691
4922bdd046dd
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1318 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1319 // New in Orthanc 1.6.0 |
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1320 if (request.isMember("PrivateCreator")) |
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1321 { |
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1322 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1323 } |
2519
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1324 } |
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|
1325 |
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1326 |
4693
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1327 void DicomModification::ParseAnonymizationRequest(bool& patientNameOverridden, |
2519
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1328 const Json::Value& request) |
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1329 { |
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1330 if (!request.isObject()) |
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1331 { |
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1332 throw OrthancException(ErrorCode_BadFileFormat); |
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1333 } |
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1334 |
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1335 bool force = GetBooleanValue("Force", request, false); |
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1336 |
4677
521e39b3f2c0
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1337 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0 |
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1338 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3 |
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1339 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4 |
2519
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1340 if (request.isMember("DicomVersion")) |
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1341 { |
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1342 if (request["DicomVersion"].type() != Json::stringValue) |
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1343 { |
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1344 throw OrthancException(ErrorCode_BadFileFormat); |
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1345 } |
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1346 else |
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1347 { |
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1348 version = StringToDicomVersion(request["DicomVersion"].asString()); |
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1349 } |
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1350 } |
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1351 |
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1352 SetupAnonymization(version); |
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1353 |
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1354 if (GetBooleanValue("KeepPrivateTags", request, false)) |
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1355 { |
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1356 SetRemovePrivateTags(false); |
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1357 } |
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1358 |
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1359 if (request.isMember("Remove")) |
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1360 { |
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|
1361 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1362 } |
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1363 |
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|
1364 if (request.isMember("Replace")) |
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1365 { |
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1366 ParseReplacements(*this, request["Replace"], force); |
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1367 } |
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1368 |
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1369 if (request.isMember("Keep")) |
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1370 { |
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1371 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1372 } |
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1373 |
4693
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1374 patientNameOverridden = (uids_.find(DICOM_TAG_PATIENT_NAME) == uids_.end()); |
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1375 |
3709
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1376 // New in Orthanc 1.6.0 |
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1377 if (request.isMember("PrivateCreator")) |
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1378 { |
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|
1379 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1380 } |
2519
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1381 } |
2616
2f3007bf0708
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1382 |
4297 | 1383 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator) |
1384 { | |
1385 identifierGenerator_ = &generator; | |
1386 } | |
1387 | |
2662
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1388 |
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1389 |
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1390 |
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1391 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags"; |
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1392 static const char* LEVEL = "Level"; |
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1393 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers"; |
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1394 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID"; |
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1395 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID"; |
3860
9ccbbd55bc23
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1396 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID"; |
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1397 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships"; |
2721 | 1398 static const char* IS_ANONYMIZATION = "IsAnonymization"; |
2662
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1399 static const char* REMOVALS = "Removals"; |
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1400 static const char* CLEARINGS = "Clearings"; |
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1401 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep"; |
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1402 static const char* REPLACEMENTS = "Replacements"; |
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1403 static const char* MAP_PATIENTS = "MapPatients"; |
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1404 static const char* MAP_STUDIES = "MapStudies"; |
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1405 static const char* MAP_SERIES = "MapSeries"; |
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1406 static const char* MAP_INSTANCES = "MapInstances"; |
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1407 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0 |
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1408 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4 |
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1409 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4 |
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1410 static const char* KEEP_SEQUENCES = "KeepSequences"; // New in Orthanc 1.9.4 |
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1411 static const char* REMOVE_SEQUENCES = "RemoveSequences"; // New in Orthanc 1.9.4 |
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1412 static const char* SEQUENCE_REPLACEMENTS = "SequenceReplacements"; // New in Orthanc 1.9.4 |
2616
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1413 |
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1414 void DicomModification::Serialize(Json::Value& value) const |
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1415 { |
2662
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1416 if (identifierGenerator_ != NULL) |
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1417 { |
2954
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1418 throw OrthancException(ErrorCode_InternalError, |
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1419 "Cannot serialize a DicomModification with a custom identifier generator"); |
2662
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1420 } |
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1421 |
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1422 value = Json::objectValue; |
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1423 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_; |
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1424 value[LEVEL] = EnumerationToString(level_); |
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1425 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_; |
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1426 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_; |
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1427 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_; |
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Alain Mazy <alain@mazy.be>
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1428 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_; |
2662
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1429 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_; |
2721 | 1430 value[IS_ANONYMIZATION] = isAnonymization_; |
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1431 value[PRIVATE_CREATOR] = privateCreator_; |
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1432 |
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1433 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS); |
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1434 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS); |
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1435 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP); |
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1436 |
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1437 Json::Value& tmp = value[REPLACEMENTS]; |
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1438 |
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1439 tmp = Json::objectValue; |
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1440 |
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1441 for (Replacements::const_iterator it = replacements_.begin(); |
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1442 it != replacements_.end(); ++it) |
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1443 { |
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|
1444 assert(it->second != NULL); |
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1445 tmp[it->first.Format()] = *it->second; |
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1446 } |
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1447 |
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1448 Json::Value& mapPatients = value[MAP_PATIENTS]; |
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1449 Json::Value& mapStudies = value[MAP_STUDIES]; |
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1450 Json::Value& mapSeries = value[MAP_SERIES]; |
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1451 Json::Value& mapInstances = value[MAP_INSTANCES]; |
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1452 |
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1453 mapPatients = Json::objectValue; |
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1454 mapStudies = Json::objectValue; |
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1455 mapSeries = Json::objectValue; |
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1456 mapInstances = Json::objectValue; |
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1457 |
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1458 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it) |
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1459 { |
4200 | 1460 Json::Value* tmp2 = NULL; |
2662
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1461 |
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1462 switch (it->first.first) |
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1463 { |
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1464 case ResourceType_Patient: |
4200 | 1465 tmp2 = &mapPatients; |
2662
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1466 break; |
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1467 |
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1468 case ResourceType_Study: |
4200 | 1469 tmp2 = &mapStudies; |
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1470 break; |
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1471 |
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1472 case ResourceType_Series: |
4200 | 1473 tmp2 = &mapSeries; |
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1474 break; |
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1475 |
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1476 case ResourceType_Instance: |
4200 | 1477 tmp2 = &mapInstances; |
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1478 break; |
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1479 |
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1480 default: |
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1481 throw OrthancException(ErrorCode_InternalError); |
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1482 } |
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1483 |
4200 | 1484 assert(tmp2 != NULL); |
1485 (*tmp2) [it->first.second] = it->second; | |
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1486 } |
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1487 |
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1488 // New in Orthanc 1.9.4 |
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1489 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS); |
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1490 |
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1491 // New in Orthanc 1.9.4 |
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1492 Json::Value ranges = Json::arrayValue; |
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1493 |
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1494 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it) |
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1495 { |
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1496 Json::Value item = Json::arrayValue; |
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1497 item.append(it->GetGroupFrom()); |
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1498 item.append(it->GetGroupTo()); |
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1499 item.append(it->GetElementFrom()); |
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1500 item.append(it->GetElementTo()); |
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1501 ranges.append(item); |
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1502 } |
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1503 |
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1504 value[REMOVED_RANGES] = ranges; |
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1505 |
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1506 // New in Orthanc 1.9.4 |
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1507 Json::Value lst = Json::arrayValue; |
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1508 for (ListOfPaths::const_iterator it = keepSequences_.begin(); it != keepSequences_.end(); ++it) |
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1509 { |
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1510 lst.append(it->Format()); |
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1511 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1512 |
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diff
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|
1513 value[KEEP_SEQUENCES] = lst; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1514 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1515 // New in Orthanc 1.9.4 |
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diff
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|
1516 lst = Json::arrayValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1517 for (ListOfPaths::const_iterator it = removeSequences_.begin(); it != removeSequences_.end(); ++it) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1518 { |
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|
1519 assert(it->GetPrefixLength() > 0); |
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diff
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|
1520 lst.append(it->Format()); |
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|
1521 } |
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|
1522 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1523 value[REMOVE_SEQUENCES] = lst; |
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|
1524 |
fcd2dc7c8f31
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|
1525 // New in Orthanc 1.9.4 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1526 lst = Json::objectValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1527 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); it != sequenceReplacements_.end(); ++it) |
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diff
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|
1528 { |
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|
1529 assert(*it != NULL); |
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|
1530 assert((*it)->GetPath().GetPrefixLength() > 0); |
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|
1531 lst[(*it)->GetPath().Format()] = (*it)->GetValue(); |
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|
1532 } |
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|
1533 |
fcd2dc7c8f31
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1534 value[SEQUENCE_REPLACEMENTS] = lst; |
2662
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|
1535 } |
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|
1536 |
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|
1537 void DicomModification::UnserializeUidMap(ResourceType level, |
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1538 const Json::Value& serialized, |
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1539 const char* field) |
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1540 { |
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|
1541 if (!serialized.isMember(field) || |
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|
1542 serialized[field].type() != Json::objectValue) |
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|
1543 { |
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|
1544 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1545 } |
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|
1546 |
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1547 Json::Value::Members names = serialized[field].getMemberNames(); |
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|
1548 |
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1549 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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|
1550 { |
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1551 const Json::Value& value = serialized[field][*it]; |
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1552 |
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1553 if (value.type() != Json::stringValue) |
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|
1554 { |
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|
1555 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1556 } |
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|
1557 else |
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|
1558 { |
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1559 uidMap_[std::make_pair(level, *it)] = value.asString(); |
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|
1560 } |
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|
1561 } |
2655 | 1562 } |
1563 | |
1564 | |
2666
2540ac79ab6c
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|
1565 DicomModification::DicomModification(const Json::Value& serialized) : |
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|
1566 identifierGenerator_(NULL) |
2655 | 1567 { |
2662
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1568 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS); |
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1569 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str()); |
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1570 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS); |
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1571 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID); |
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|
1572 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID); |
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1573 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean |
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|
1574 (serialized, UPDATE_REFERENCED_RELATIONSHIPS); |
2721 | 1575 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION); |
2662
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|
1576 |
4688
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1577 if (serialized.isMember(KEEP_SOP_INSTANCE_UID)) |
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|
1578 { |
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|
1579 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID); |
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|
1580 } |
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1581 else |
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|
1582 { |
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|
1583 /** |
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|
1584 * Compatibility with jobs serialized using Orthanc between |
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1585 * 1.5.0 and 1.6.1. This compatibility was broken between 1.7.0 |
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1586 * and 1.9.3: Indeed, an exception was thrown in "ReadBoolean()" |
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|
1587 * if "KEEP_SOP_INSTANCE_UID" was absent, because of changeset: |
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|
1588 * https://hg.orthanc-server.com/orthanc/rev/3860 |
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|
1589 **/ |
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1590 keepSopInstanceUid_ = false; |
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1591 } |
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1592 |
3691
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|
1593 if (serialized.isMember(PRIVATE_CREATOR)) |
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|
1594 { |
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1595 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR); |
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1596 } |
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|
1597 |
2662
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1598 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS); |
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1599 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS); |
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1600 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP); |
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1601 |
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1602 if (!serialized.isMember(REPLACEMENTS) || |
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1603 serialized[REPLACEMENTS].type() != Json::objectValue) |
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1604 { |
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|
1605 throw OrthancException(ErrorCode_BadFileFormat); |
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1606 } |
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1607 |
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1608 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames(); |
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1609 |
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1610 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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1611 { |
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1612 DicomTag tag(0, 0); |
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1613 if (!DicomTag::ParseHexadecimal(tag, it->c_str())) |
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1614 { |
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|
1615 throw OrthancException(ErrorCode_BadFileFormat); |
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1616 } |
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diff
changeset
|
1617 else |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1618 { |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1619 const Json::Value& value = serialized[REPLACEMENTS][*it]; |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1620 replacements_.insert(std::make_pair(tag, new Json::Value(value))); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1621 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1622 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1623 |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1624 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1625 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1626 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1627 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES); |
4678
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1628 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1629 // New in Orthanc 1.9.4 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1630 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1631 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1632 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1633 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1634 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1635 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1636 SetupUidsFromOrthanc_1_9_3(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1637 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1638 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1639 // New in Orthanc 1.9.4 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1640 removedRanges_.clear(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1641 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1642 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1643 const Json::Value& ranges = serialized[REMOVED_RANGES]; |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1644 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1645 if (ranges.type() != Json::arrayValue) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1646 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1647 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1648 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1649 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1650 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1651 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1652 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1653 if (ranges[i].type() != Json::arrayValue || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1654 ranges[i].size() != 4 || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1655 !ranges[i][0].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1656 !ranges[i][1].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1657 !ranges[i][2].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1658 !ranges[i][3].isUInt()) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1659 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1660 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1661 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1662 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1663 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1664 Json::LargestUInt groupFrom = ranges[i][0].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1665 Json::LargestUInt groupTo = ranges[i][1].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1666 Json::LargestUInt elementFrom = ranges[i][2].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1667 Json::LargestUInt elementTo = ranges[i][3].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1668 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1669 if (groupFrom > groupTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1670 elementFrom > elementTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1671 groupTo > 0xffffu || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1672 elementTo > 0xffffu) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1673 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1674 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1675 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1676 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1677 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1678 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo)); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1679 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1680 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1681 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1682 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1683 } |
4687
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1684 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1685 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1686 if (serialized.isMember(KEEP_SEQUENCES)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1687 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1688 const Json::Value& keep = serialized[KEEP_SEQUENCES]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1689 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1690 if (keep.type() != Json::arrayValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1691 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1692 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1693 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1694 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1695 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1696 for (Json::Value::ArrayIndex i = 0; i < keep.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1697 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1698 if (keep[i].type() != Json::stringValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1699 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1700 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1701 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1702 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1703 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1704 keepSequences_.push_back(DicomPath::Parse(keep[i].asString())); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1705 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1706 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1707 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1708 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1709 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1710 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1711 if (serialized.isMember(REMOVE_SEQUENCES)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1712 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1713 const Json::Value& remove = serialized[REMOVE_SEQUENCES]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1714 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1715 if (remove.type() != Json::arrayValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1716 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1717 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1718 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1719 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1720 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1721 for (Json::Value::ArrayIndex i = 0; i < remove.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1722 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1723 if (remove[i].type() != Json::stringValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1724 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1725 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1726 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1727 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1728 { |
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"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1729 removeSequences_.push_back(DicomPath::Parse(remove[i].asString())); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1730 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1731 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1732 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1733 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1734 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1735 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1736 if (serialized.isMember(SEQUENCE_REPLACEMENTS)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1737 { |
fcd2dc7c8f31
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1738 const Json::Value& replace = serialized[SEQUENCE_REPLACEMENTS]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1739 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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4685
diff
changeset
|
1740 if (replace.type() != Json::objectValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1741 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1742 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1743 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1744 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1745 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
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4685
diff
changeset
|
1746 Json::Value::Members members = replace.getMemberNames(); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1747 for (size_t i = 0; i < members.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1748 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1749 sequenceReplacements_.push_back( |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1750 new SequenceReplacement(DicomPath::Parse(members[i]), replace[members[i]])); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1751 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1752 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1753 } |
2616
2f3007bf0708
event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2535
diff
changeset
|
1754 } |
4297 | 1755 |
1756 | |
1757 void DicomModification::SetPrivateCreator(const std::string &privateCreator) | |
1758 { | |
1759 privateCreator_ = privateCreator; | |
1760 } | |
1761 | |
1762 const std::string &DicomModification::GetPrivateCreator() const | |
1763 { | |
1764 return privateCreator_; | |
1765 } | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1766 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1767 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1768 void DicomModification::Keep(const DicomPath& path) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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parents:
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diff
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|
1769 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1770 if (path.GetPrefixLength() == 0) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1771 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1772 Keep(path.GetFinalTag()); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1773 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1774 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1775 keepSequences_.push_back(path); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1776 MarkNotOrthancAnonymization(); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1777 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1778 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1779 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1780 void DicomModification::Remove(const DicomPath& path) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1781 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1782 if (path.GetPrefixLength() == 0) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1783 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1784 Remove(path.GetFinalTag()); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1785 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1786 else |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1787 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1788 removeSequences_.push_back(path); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1789 MarkNotOrthancAnonymization(); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1790 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1791 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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diff
changeset
|
1792 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1793 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1794 void DicomModification::Replace(const DicomPath& path, |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1795 const Json::Value& value, |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1796 bool safeForAnonymization) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1797 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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diff
changeset
|
1798 if (path.GetPrefixLength() == 0) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1799 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1800 Replace(path.GetFinalTag(), value, safeForAnonymization); |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1801 } |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1802 else |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1803 { |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1804 sequenceReplacements_.push_back(new SequenceReplacement(path, value)); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1805 |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1806 if (!safeForAnonymization) |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1807 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1808 MarkNotOrthancAnonymization(); |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
1809 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1810 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
1811 } |
4789
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1812 |
51ec061516c9
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1813 |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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diff
changeset
|
1814 bool DicomModification::IsAlteredTag(const DicomTag& tag) const |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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changeset
|
1815 { |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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diff
changeset
|
1816 return (uids_.find(tag) != uids_.end() || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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|
1817 IsCleared(tag) || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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|
1818 IsRemoved(tag) || |
51ec061516c9
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|
1819 IsReplaced(tag) || |
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changeset
|
1820 (tag.IsPrivate() && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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1821 ArePrivateTagsRemoved() && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
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1822 privateTagsToKeep_.find(tag) == privateTagsToKeep_.end()) || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
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1823 (isAnonymization_ && ( |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
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1824 tag == DICOM_TAG_PATIENT_NAME || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
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1825 tag == DICOM_TAG_PATIENT_ID)) || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
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1826 (tag == DICOM_TAG_STUDY_INSTANCE_UID && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
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1827 !keepStudyInstanceUid_) || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
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1828 (tag == DICOM_TAG_SERIES_INSTANCE_UID && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
changeset
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1829 !keepSeriesInstanceUid_) || |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
changeset
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1830 (tag == DICOM_TAG_SOP_INSTANCE_UID && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
changeset
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1831 !keepSopInstanceUid_)); |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4737
diff
changeset
|
1832 } |
786 | 1833 } |