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annotate OrthancServer/Sources/ServerIndex.h @ 4555:456ed3fcff81 db-changes

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 03 Mar 2021 17:13:41 +0100
parents efd90f778cd2
children 2f4d7ec9b993
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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34 #pragma once
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35
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36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h"
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37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h"
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38
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39 #include "Database/IDatabaseWrapper.h"
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40 #include "DicomInstanceOrigin.h"
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41
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42 #include <boost/thread.hpp>
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43 #include <boost/noncopyable.hpp>
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44
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45 namespace Orthanc
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46 {
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47 class DatabaseLookup;
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48 class ParsedDicomFile;
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49 class ServerContext;
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50
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51 class ServerIndex : public boost::noncopyable
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52 {
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53 public:
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54 typedef std::list<FileInfo> Attachments;
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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56
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57 private:
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58 class Listener;
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59 class Transaction;
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60 class UnstableResourcePayload;
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61 class MainDicomTagsRegistry;
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63 bool done_;
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64 boost::mutex mutex_;
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65 boost::thread flushThread_;
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66 boost::thread unstableResourcesMonitorThread_;
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68 std::unique_ptr<Listener> listener_;
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69 IDatabaseWrapper& db_;
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_;
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72 uint64_t maximumStorageSize_;
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73 unsigned int maximumPatients_;
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_;
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76 static void FlushThread(ServerIndex* that,
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77 unsigned int threadSleep);
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78
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79 static void UnstableResourcesMonitorThread(ServerIndex* that,
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80 unsigned int threadSleep);
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81
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82 // A transaction must be running
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83 static void MainDicomTagsToJson(Json::Value& result,
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84 IDatabaseWrapper& db,
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85 int64_t resourceId,
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86 ResourceType resourceType);
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87
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88 bool IsRecyclingNeeded(uint64_t instanceSize);
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90 void Recycle(uint64_t instanceSize,
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91 const std::string& newPatientId);
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92
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93 void StandaloneRecycling();
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94
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95 void MarkAsUnstable(int64_t id,
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96 Orthanc::ResourceType type,
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97 const std::string& publicId);
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98
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99 void LogChange(int64_t internalId,
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100 ChangeType changeType,
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101 ResourceType resourceType,
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102 const std::string& publicId);
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103
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104 void SignalNewResource(ChangeType changeType,
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105 ResourceType level,
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106 const std::string& publicId,
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107 int64_t internalId);
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108
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109 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property);
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110
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111 void NormalizeLookup(std::vector<DatabaseConstraint>& target,
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112 const DatabaseLookup& source,
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113 ResourceType level) const;
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114
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115 // A transaction must be running
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116 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db,
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117 int64_t id,
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118 int64_t expectedNumberOfInstances);
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119
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120 bool IsUnstableResource(int64_t id);
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121
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122 public:
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123 ServerIndex(ServerContext& context,
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124 IDatabaseWrapper& database,
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125 unsigned int threadSleep);
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126
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127 ~ServerIndex();
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128
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129 void Stop();
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130
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131 uint64_t GetMaximumStorageSize() const
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132 {
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133 return maximumStorageSize_;
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134 }
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135
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136 uint64_t GetMaximumPatientCount() const
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137 {
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138 return maximumPatients_;
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139 }
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141 // "size == 0" means no limit on the storage size
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142 void SetMaximumStorageSize(uint64_t size);
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143
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144 // "count == 0" means no limit on the number of patients
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145 void SetMaximumPatientCount(unsigned int count);
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146
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147 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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148 const DicomMap& dicomSummary,
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149 const Attachments& attachments,
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150 const MetadataMap& metadata,
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151 const DicomInstanceOrigin& origin,
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152 bool overwrite,
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153 bool hasTransferSyntax,
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154 DicomTransferSyntax transferSyntax,
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155 bool hasPixelDataOffset,
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156 uint64_t pixelDataOffset);
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157
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158 void GetGlobalStatistics(/* out */ uint64_t& diskSize,
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159 /* out */ uint64_t& uncompressedSize,
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160 /* out */ uint64_t& countPatients,
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161 /* out */ uint64_t& countStudies,
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162 /* out */ uint64_t& countSeries,
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163 /* out */ uint64_t& countInstances);
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164
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165 bool DeleteResource(Json::Value& target /* out */,
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166 const std::string& uuid,
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167 ResourceType expectedType);
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168
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169 void GetChanges(Json::Value& target,
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170 int64_t since,
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171 unsigned int maxResults);
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172
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173 void GetLastChange(Json::Value& target);
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174
231
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175 void LogExportedResource(const std::string& publicId,
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176 const std::string& remoteModality);
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177
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178 void GetExportedResources(Json::Value& target,
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179 int64_t since,
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180 unsigned int maxResults);
237
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181
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182 void GetLastExportedResource(Json::Value& target);
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183
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184 bool IsProtectedPatient(const std::string& publicId);
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185
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186 void SetProtectedPatient(const std::string& publicId,
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187 bool isProtected);
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188
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189 void GetChildren(std::list<std::string>& result,
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190 const std::string& publicId);
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191
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192 void GetChildInstances(std::list<std::string>& result,
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193 const std::string& publicId);
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194
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195 void SetMetadata(const std::string& publicId,
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196 MetadataType type,
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197 const std::string& value);
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198
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199 void DeleteMetadata(const std::string& publicId,
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200 MetadataType type);
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201
306
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202 bool LookupMetadata(std::string& target,
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203 const std::string& publicId,
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204 ResourceType expectedType,
306
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205 MetadataType type);
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206
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207 void ListAvailableAttachments(std::set<FileContentType>& target,
697
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208 const std::string& publicId,
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209 ResourceType expectedType);
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210
306
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211 bool LookupParent(std::string& target,
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212 const std::string& publicId);
310
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213
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214 uint64_t IncrementGlobalSequence(GlobalProperty sequence);
315
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215
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216 void LogChange(ChangeType changeType,
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217 const std::string& publicId);
413
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218
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219 void DeleteChanges();
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220
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221 void DeleteExportedResources();
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222
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223 void GetResourceStatistics(/* out */ ResourceType& type,
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224 /* out */ uint64_t& diskSize,
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225 /* out */ uint64_t& uncompressedSize,
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226 /* out */ unsigned int& countStudies,
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227 /* out */ unsigned int& countSeries,
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228 /* out */ unsigned int& countInstances,
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229 /* out */ uint64_t& dicomDiskSize,
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230 /* out */ uint64_t& dicomUncompressedSize,
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231 const std::string& publicId);
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232
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233 void LookupIdentifierExact(std::vector<std::string>& result,
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234 ResourceType level,
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diff changeset
235 const DicomTag& tag,
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236 const std::string& value);
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237
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238 StoreStatus AddAttachment(const FileInfo& attachment,
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239 const std::string& publicId);
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240
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241 void DeleteAttachment(const std::string& publicId,
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242 FileContentType type);
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243
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244 void SetGlobalProperty(GlobalProperty property,
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245 const std::string& value);
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246
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247 bool LookupGlobalProperty(std::string& value,
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248 GlobalProperty property);
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249
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250 std::string GetGlobalProperty(GlobalProperty property,
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251 const std::string& defaultValue);
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252
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253 bool GetMainDicomTags(DicomMap& result,
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254 const std::string& publicId,
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255 ResourceType expectedType,
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diff changeset
256 ResourceType levelOfInterest);
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257
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258 // Only applicable at the instance level
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259 bool GetAllMainDicomTags(DicomMap& result,
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260 const std::string& instancePublicId);
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261
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262 bool LookupResourceType(ResourceType& type,
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263 const std::string& publicId);
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diff changeset
264
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diff changeset
265 unsigned int GetDatabaseVersion();
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266
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267 bool LookupParent(std::string& target,
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268 const std::string& publicId,
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diff changeset
269 ResourceType parentType);
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diff changeset
270
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diff changeset
271 void ReconstructInstance(const ParsedDicomFile& dicom);
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272
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273 void ApplyLookupResources(std::vector<std::string>& resourcesId,
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274 std::vector<std::string>* instancesId, // Can be NULL if not needed
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diff changeset
275 const DatabaseLookup& lookup,
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276 ResourceType queryLevel,
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diff changeset
277 size_t limit);
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278
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279
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280
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281 /***
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282 ** PROTOTYPING FOR DB REFACTORING BELOW
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283 ***/
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284
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285 public:
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286 class ReadOnlyTransaction : public boost::noncopyable
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287 {
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288 protected:
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289 IDatabaseWrapper& db_;
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290
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291 public:
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292 explicit ReadOnlyTransaction(IDatabaseWrapper& db) :
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293 db_(db)
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294 {
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295 }
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296
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297 /**
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298 * Higher-level constructions
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299 **/
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300
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301 SeriesStatus GetSeriesStatus(int64_t id,
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302 int64_t expectedNumberOfInstances)
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303 {
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304 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances);
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305 }
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306
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307 void MainDicomTagsToJson(Json::Value& result,
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308 int64_t resourceId,
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309 ResourceType resourceType)
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310 {
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311 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType);
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312 }
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313
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314 /**
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315 * Read-only methods from "IDatabaseWrapper"
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316 **/
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317
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318 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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319 int64_t id)
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320 {
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321 db_.GetAllMetadata(target, id);
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322 }
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323
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324 void GetAllPublicIds(std::list<std::string>& target,
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325 ResourceType resourceType)
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326 {
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327 return db_.GetAllPublicIds(target, resourceType);
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328 }
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329
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330 void GetAllPublicIds(std::list<std::string>& target,
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331 ResourceType resourceType,
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332 size_t since,
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333 size_t limit)
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334 {
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335 return db_.GetAllPublicIds(target, resourceType, since, limit);
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336 }
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337
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338 void GetChildrenPublicId(std::list<std::string>& target,
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339 int64_t id)
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340 {
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341 db_.GetChildrenPublicId(target, id);
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342 }
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343
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344 void GetMainDicomTags(DicomMap& map,
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345 int64_t id)
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346 {
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347 db_.GetMainDicomTags(map, id);
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348 }
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349
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350 bool LookupAttachment(FileInfo& attachment,
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351 int64_t id,
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352 FileContentType contentType)
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353 {
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354 return db_.LookupAttachment(attachment, id, contentType);
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355 }
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356
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357 bool LookupResource(int64_t& id,
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358 ResourceType& type,
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359 const std::string& publicId)
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360 {
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361 return db_.LookupResource(id, type, publicId);
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362 }
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363
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364 bool LookupResourceAndParent(int64_t& id,
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365 ResourceType& type,
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366 std::string& parentPublicId,
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367 const std::string& publicId)
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368 {
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369 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId);
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370 }
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371 };
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372
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373
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374 class ReadWriteTransaction : public ReadOnlyTransaction
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375 {
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376 public:
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377 explicit ReadWriteTransaction(IDatabaseWrapper& db) :
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378 ReadOnlyTransaction(db)
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379 {
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380 }
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381
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382 };
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383
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384
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385 class IReadOnlyOperations : public boost::noncopyable
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386 {
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387 public:
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388 virtual ~IReadOnlyOperations()
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389 {
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390 }
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391
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392 virtual void Apply(ReadOnlyTransaction& transaction) = 0;
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393 };
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394
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395
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396 class IReadWriteOperations : public boost::noncopyable
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397 {
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398 public:
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399 virtual ~IReadWriteOperations()
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400 {
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401 }
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402
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403 virtual void Apply(ReadWriteTransaction& transaction) = 0;
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404 };
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405
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406
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407 typedef void (*ReadOnlyFunction) (ReadOnlyTransaction& transaction); // TODO - Is this useful?
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408 typedef void (*ReadWriteFunction) (ReadWriteTransaction& transaction); // TODO - Is this useful?
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409
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410
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411 private:
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412 class ReadOnlyWrapper; // TODO - Is this useful?
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413 class ReadWriteWrapper; // TODO - Is this useful?
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414
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415 void ApplyInternal(IReadOnlyOperations* readOperations,
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416 IReadWriteOperations* writeOperations);
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417
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418 unsigned int maxRetries_;
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419
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420 public:
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421 void Apply(IReadOnlyOperations& operations);
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422
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423 void Apply(IReadWriteOperations& operations);
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424
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425 void Apply(ReadOnlyFunction func);
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426
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427 void Apply(ReadWriteFunction func);
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428
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429 bool ExpandResource(Json::Value& target,
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430 const std::string& publicId,
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431 ResourceType level);
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432
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433 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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434 const std::string& publicId,
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435 ResourceType level);
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436
Sebastien Jodogne <s.jodogne@gmail.com>
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437 void GetAllUuids(std::list<std::string>& target,
Sebastien Jodogne <s.jodogne@gmail.com>
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438 ResourceType resourceType);
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439
Sebastien Jodogne <s.jodogne@gmail.com>
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440 void GetAllUuids(std::list<std::string>& target,
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441 ResourceType resourceType,
Sebastien Jodogne <s.jodogne@gmail.com>
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442 size_t since,
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443 size_t limit);
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444
Sebastien Jodogne <s.jodogne@gmail.com>
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445 bool LookupAttachment(FileInfo& attachment,
Sebastien Jodogne <s.jodogne@gmail.com>
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446 const std::string& instancePublicId,
Sebastien Jodogne <s.jodogne@gmail.com>
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447 FileContentType contentType);
0
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Sebastien Jodogne <s.jodogne@gmail.com>
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448 };
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
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449 }