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annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h @ 4792:434843934307 storage-cache

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Added a StorageCache in the StorageAccessor
author Alain Mazy <am@osimis.io>
date Thu, 30 Sep 2021 12:14:19 +0200
parents 3b78ba359db3
children 7053502fbf97
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #pragma once
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24
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25 #include "../OrthancFramework.h"
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26
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27 #if !defined(ORTHANC_ENABLE_JPEG)
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28 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file
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29 #endif
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30
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31 #if !defined(ORTHANC_ENABLE_PNG)
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32 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file
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33 #endif
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34
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35 #if !defined(ORTHANC_ENABLE_CIVETWEB)
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36 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file
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37 #endif
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38
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39 #if !defined(ORTHANC_ENABLE_MONGOOSE)
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40 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file
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41 #endif
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42
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43 #if !defined(ORTHANC_SANDBOXED)
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44 # error The macro ORTHANC_SANDBOXED must be defined
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45 #endif
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47 #if !defined(ORTHANC_ENABLE_DCMTK)
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48 # error The macro ORTHANC_ENABLE_DCMTK must be defined
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49 #endif
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50
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51 #if ORTHANC_ENABLE_DCMTK != 1
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52 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file
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53 #endif
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54
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55 #include "ITagVisitor.h"
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56 #include "../DicomFormat/DicomInstanceHasher.h"
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57 #include "../DicomFormat/DicomPath.h"
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58 #include "../Images/ImageAccessor.h"
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59 #include "../IDynamicObject.h"
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60 #include "../Toolbox.h"
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61
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62 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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63 # include "../RestApi/RestApiOutput.h"
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64 #endif
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65
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66 #include <boost/shared_ptr.hpp>
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69 class DcmDataset;
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70 class DcmFileFormat;
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71
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72 namespace Orthanc
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73 {
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74 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject
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75 {
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76 private:
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77 struct PImpl;
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78 boost::shared_ptr<PImpl> pimpl_;
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79
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80 ParsedDicomFile(const ParsedDicomFile& other,
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81 bool keepSopInstanceUid);
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82
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83 void CreateFromDicomMap(const DicomMap& source,
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84 Encoding defaultEncoding,
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85 bool permissive,
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86 const std::string& defaultPrivateCreator,
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87 const std::map<uint16_t, std::string>& privateCreators);
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88
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89 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
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90
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91 void UpdateStorageUid(const DicomTag& tag,
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92 const std::string& value,
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93 bool decodeDataUriScheme);
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94
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95 void InvalidateCache();
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96
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97 bool EmbedContentInternal(const std::string& dataUriScheme);
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98
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99 // For internal use only, in order to provide const-correctness on
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100 // the top of DCMTK API
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101 DcmFileFormat& GetDcmtkObjectConst() const;
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102
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103 explicit ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone)
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105 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1
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106 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore
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107 void DatasetToJson(Json::Value& target,
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108 DicomToJsonFormat format,
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109 DicomToJsonFlags flags,
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110 unsigned int maxStringLength);
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111 DcmFileFormat& GetDcmtkObject() const;
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112 void Apply(ITagVisitor& visitor);
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113 ParsedDicomFile* Clone(bool keepSopInstanceUid);
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114 bool LookupTransferSyntax(std::string& result);
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115 bool LookupTransferSyntax(std::string& result) const;
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116 bool GetTagValue(std::string& value,
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117 const DicomTag& tag);
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118 #endif
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119
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120 public:
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121 explicit ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
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123 ParsedDicomFile(const DicomMap& map,
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124 Encoding defaultEncoding,
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125 bool permissive);
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126
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127 ParsedDicomFile(const DicomMap& map,
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128 Encoding defaultEncoding,
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129 bool permissive,
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130 const std::string& defaultPrivateCreator,
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131 const std::map<uint16_t, std::string>& privateCreators);
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132
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133 ParsedDicomFile(const void* content,
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134 size_t size);
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135
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136 explicit ParsedDicomFile(const std::string& content);
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137
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138 explicit ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object
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139
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140 explicit ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object
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141
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142 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom);
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143
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144 DcmFileFormat& GetDcmtkObject();
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145
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146 // The "ParsedDicomFile" object cannot be used after calling this method
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147 DcmFileFormat* ReleaseDcmtkObject();
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148
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149 ParsedDicomFile* Clone(bool keepSopInstanceUid) const;
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150
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151 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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152 void SendPathValue(RestApiOutput& output,
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153 const UriComponents& uri) const;
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154
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155 void Answer(RestApiOutput& output) const;
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156 #endif
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157
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158 void Remove(const DicomTag& tag);
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159
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160 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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161 void Clear(const DicomTag& tag,
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162 bool onlyIfExists);
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163
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164 void Replace(const DicomTag& tag,
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165 const std::string& utf8Value,
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166 bool decodeDataUriScheme,
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167 DicomReplaceMode mode,
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168 const std::string& privateCreator /* used only for private tags */);
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169
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170 void Replace(const DicomTag& tag,
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171 const Json::Value& value, // Assumed to be encoded with UTF-8
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172 bool decodeDataUriScheme,
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173 DicomReplaceMode mode,
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174 const std::string& privateCreator /* used only for private tags */);
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175
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176 void Insert(const DicomTag& tag,
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177 const Json::Value& value, // Assumed to be encoded with UTF-8
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178 bool decodeDataUriScheme,
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179 const std::string& privateCreator /* used only for private tags */);
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180
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181 // Cannot be applied to private tags
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182 void ReplacePlainString(const DicomTag& tag,
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183 const std::string& utf8Value);
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184
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185 // Cannot be applied to private tags
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186 void SetIfAbsent(const DicomTag& tag,
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187 const std::string& utf8Value);
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188
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189 void RemovePrivateTags();
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190
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191 void RemovePrivateTags(const std::set<DicomTag>& toKeep);
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192
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193 // WARNING: This function handles the decoding of strings to UTF8
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194 bool GetTagValue(std::string& value,
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195 const DicomTag& tag) const;
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196
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197 DicomInstanceHasher GetHasher() const;
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198
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199 // The "Save" methods are not tagged as "const", as the internal
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200 // representation might be changed after serialization
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201 void SaveToMemoryBuffer(std::string& buffer);
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202
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203 #if ORTHANC_SANDBOXED == 0
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204 void SaveToFile(const std::string& path);
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205 #endif
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206
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207 void EmbedContent(const std::string& dataUriScheme);
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208
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diff changeset
209 void EmbedImage(const ImageAccessor& accessor);
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diff changeset
210
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211 void EmbedImage(MimeType mime,
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212 const std::string& content);
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213
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diff changeset
214 Encoding DetectEncoding(bool& hasCodeExtensions) const;
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215
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216 // WARNING: This function only sets the encoding, it will not
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217 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
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218 void SetEncoding(Encoding encoding);
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219
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diff changeset
220 void DatasetToJson(Json::Value& target,
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221 DicomToJsonFormat format,
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222 DicomToJsonFlags flags,
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223 unsigned int maxStringLength) const;
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224
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225 void DatasetToJson(Json::Value& target,
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226 DicomToJsonFormat format,
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227 DicomToJsonFlags flags,
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228 unsigned int maxStringLength,
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229 const std::set<DicomTag>& ignoreTagLength) const;
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230
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231 void HeaderToJson(Json::Value& target,
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232 DicomToJsonFormat format) const;
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233
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234 bool HasTag(const DicomTag& tag) const;
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235
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236 void EmbedPdf(const std::string& pdf);
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237
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238 bool ExtractPdf(std::string& pdf) const;
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239
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diff changeset
240 void GetRawFrame(std::string& target, // OUT
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241 MimeType& mime, // OUT
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242 unsigned int frameId) const; // IN
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243
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244 unsigned int GetFramesCount() const;
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245
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246 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
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247 DicomFromJsonFlags flags,
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248 const std::string& privateCreator);
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249
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250 void ChangeEncoding(Encoding target);
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251
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252 /**
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253 * The DICOM tags with a string whose size is greater than
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254 * "maxTagLength", are replaced by a DicomValue whose type is
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255 * "DicomValue_Null". If "maxTagLength" is zero, all the leaf tags
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256 * are included, independently of their length.
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257 **/
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258 void ExtractDicomSummary(DicomMap& target,
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259 unsigned int maxTagLength) const;
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260
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261 /**
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262 * This flavor can be used to bypass the "maxTagLength" limitation
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263 * on a selected set of DICOM tags.
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264 **/
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265 void ExtractDicomSummary(DicomMap& target,
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266 unsigned int maxTagLength,
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267 const std::set<DicomTag>& ignoreTagLength) const;
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268
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269 bool LookupTransferSyntax(DicomTransferSyntax& result) const;
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270
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271 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
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272
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273 void Apply(ITagVisitor& visitor) const;
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274
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275 // Decode the given frame, using the built-in DICOM decoder of Orthanc
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276 ImageAccessor* DecodeFrame(unsigned int frame) const;
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277
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278 void ReplacePath(const DicomPath& path,
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279 const Json::Value& value, // Assumed to be encoded with UTF-8
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280 bool decodeDataUriScheme,
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281 DicomReplaceMode mode,
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282 const std::string& privateCreator /* used only for private tags */);
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283
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284 void RemovePath(const DicomPath& path);
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285
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286 void ClearPath(const DicomPath& path,
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287 bool onlyIfExists);
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288
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289 bool LookupSequenceItem(DicomMap& target,
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290 const DicomPath& path,
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291 size_t sequenceIndex) const;
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292
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293 void GetDefaultWindowing(double& windowCenter,
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294 double& windowWidth,
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295 unsigned int frame) const;
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296
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297 void GetRescale(double& rescaleIntercept,
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298 double& rescaleSlope,
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299 unsigned int frame) const;
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300 };
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301 }