Mercurial > hg > orthanc
annotate Core/DicomParsing/DicomDirWriter.cpp @ 3368:3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 14 May 2019 09:30:09 +0200 |
parents | cf8cbeb35f33 |
children | 94f4a18a79cc |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 |
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35 |
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36 |
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37 /*========================================================================= |
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38 |
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39 This file is based on portions of the following project: |
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40 |
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41 Program: DCMTK 3.6.0 |
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42 Module: http://dicom.offis.de/dcmtk.php.en |
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43 |
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44 Copyright (C) 1994-2011, OFFIS e.V. |
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45 All rights reserved. |
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46 |
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47 This software and supporting documentation were developed by |
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48 |
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49 OFFIS e.V. |
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50 R&D Division Health |
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51 Escherweg 2 |
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52 26121 Oldenburg, Germany |
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53 |
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54 Redistribution and use in source and binary forms, with or without |
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55 modification, are permitted provided that the following conditions |
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56 are met: |
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57 |
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58 - Redistributions of source code must retain the above copyright |
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59 notice, this list of conditions and the following disclaimer. |
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60 |
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61 - Redistributions in binary form must reproduce the above copyright |
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62 notice, this list of conditions and the following disclaimer in the |
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63 documentation and/or other materials provided with the distribution. |
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64 |
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65 - Neither the name of OFFIS nor the names of its contributors may be |
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66 used to endorse or promote products derived from this software |
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67 without specific prior written permission. |
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68 |
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69 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS |
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70 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT |
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71 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR |
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72 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT |
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73 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, |
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74 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT |
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75 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, |
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76 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY |
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77 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT |
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78 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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79 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
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80 |
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81 =========================================================================*/ |
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82 |
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83 |
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84 |
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85 /*** |
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86 |
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87 Validation: |
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88 |
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89 # sudo apt-get install dicom3tools |
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90 # dciodvfy DICOMDIR 2>&1 | less |
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91 # dcentvfy DICOMDIR 2>&1 | less |
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92 |
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93 http://www.dclunie.com/dicom3tools/dciodvfy.html |
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94 |
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95 DICOMDIR viewer working with Wine under Linux: |
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96 http://www.microdicom.com/ |
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97 |
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98 ***/ |
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99 |
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100 |
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101 #include "../PrecompiledHeaders.h" |
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102 #include "DicomDirWriter.h" |
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103 |
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104 #include "FromDcmtkBridge.h" |
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105 #include "ToDcmtkBridge.h" |
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106 |
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107 #include "../Logging.h" |
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108 #include "../OrthancException.h" |
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109 #include "../TemporaryFile.h" |
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110 #include "../Toolbox.h" |
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111 #include "../SystemToolbox.h" |
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112 |
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113 #include <dcmtk/dcmdata/dcdicdir.h> |
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114 #include <dcmtk/dcmdata/dcmetinf.h> |
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115 #include <dcmtk/dcmdata/dcdeftag.h> |
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116 #include <dcmtk/dcmdata/dcuid.h> |
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117 #include <dcmtk/dcmdata/dcddirif.h> |
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118 #include <dcmtk/dcmdata/dcvrui.h> |
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119 #include <dcmtk/dcmdata/dcsequen.h> |
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120 #include <dcmtk/dcmdata/dcostrmf.h> |
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121 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */ |
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122 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */ |
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123 |
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124 #include <memory> |
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125 |
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126 namespace Orthanc |
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127 { |
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128 class DicomDirWriter::PImpl |
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129 { |
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130 private: |
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131 bool utc_; |
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132 std::string fileSetId_; |
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133 bool extendedSopClass_; |
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134 TemporaryFile file_; |
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135 std::auto_ptr<DcmDicomDir> dir_; |
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136 |
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137 typedef std::pair<ResourceType, std::string> IndexKey; |
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138 typedef std::map<IndexKey, DcmDirectoryRecord* > Index; |
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139 Index index_; |
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140 |
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141 |
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142 DcmDicomDir& GetDicomDir() |
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143 { |
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144 if (dir_.get() == NULL) |
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145 { |
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146 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(), |
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147 fileSetId_.c_str())); |
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148 //SetTagValue(dir_->getRootRecord(), DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(Encoding_Utf8)); |
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149 } |
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150 |
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151 return *dir_; |
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152 } |
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153 |
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154 |
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155 DcmDirectoryRecord& GetRoot() |
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156 { |
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157 return GetDicomDir().getRootRecord(); |
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158 } |
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159 |
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160 |
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161 static bool GetUtf8TagValue(std::string& result, |
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162 DcmItem& source, |
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163 Encoding encoding, |
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164 bool hasCodeExtensions, |
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165 const DcmTagKey& key) |
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166 { |
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167 DcmElement* element = NULL; |
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168 result.clear(); |
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169 |
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170 if (source.findAndGetElement(key, element).good()) |
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171 { |
1893 | 172 char* s = NULL; |
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173 if (element->isLeaf() && |
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174 element->getString(s).good()) |
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175 { |
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176 if (s != NULL) |
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177 { |
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178 result = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
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179 } |
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180 |
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181 return true; |
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182 } |
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183 } |
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184 |
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185 return false; |
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186 } |
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187 |
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188 |
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189 static void SetTagValue(DcmDirectoryRecord& target, |
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190 const DcmTagKey& key, |
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191 const std::string& valueUtf8) |
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192 { |
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193 std::string s = Toolbox::ConvertFromUtf8(valueUtf8, Encoding_Ascii); |
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194 |
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195 if (!target.putAndInsertString(key, s.c_str()).good()) |
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196 { |
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197 throw OrthancException(ErrorCode_InternalError); |
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198 } |
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199 } |
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200 |
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201 |
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202 |
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203 static bool CopyString(DcmDirectoryRecord& target, |
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204 DcmDataset& source, |
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205 Encoding encoding, |
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206 bool hasCodeExtensions, |
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207 const DcmTagKey& key, |
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208 bool optional, |
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209 bool copyEmpty) |
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210 { |
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211 if (optional && |
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212 !source.tagExistsWithValue(key) && |
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213 !(copyEmpty && source.tagExists(key))) |
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214 { |
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215 return false; |
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216 } |
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217 |
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218 std::string value; |
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219 bool found = GetUtf8TagValue(value, source, encoding, hasCodeExtensions, key); |
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220 |
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221 if (!found) |
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222 { |
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223 // We don't raise an exception if "!optional", even if this |
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224 // results in an invalid DICOM file |
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225 value.clear(); |
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226 } |
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227 |
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228 SetTagValue(target, key, value); |
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229 return found; |
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230 } |
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231 |
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232 |
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233 static void CopyStringType1(DcmDirectoryRecord& target, |
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234 DcmDataset& source, |
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235 Encoding encoding, |
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236 bool hasCodeExtensions, |
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237 const DcmTagKey& key) |
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238 { |
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239 CopyString(target, source, encoding, hasCodeExtensions, key, false, false); |
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240 } |
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241 |
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242 static void CopyStringType1C(DcmDirectoryRecord& target, |
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243 DcmDataset& source, |
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244 Encoding encoding, |
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245 bool hasCodeExtensions, |
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246 const DcmTagKey& key) |
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247 { |
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248 CopyString(target, source, encoding, hasCodeExtensions, key, true, false); |
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249 } |
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250 |
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251 static void CopyStringType2(DcmDirectoryRecord& target, |
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252 DcmDataset& source, |
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253 Encoding encoding, |
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254 bool hasCodeExtensions, |
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255 const DcmTagKey& key) |
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256 { |
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257 CopyString(target, source, encoding, hasCodeExtensions, key, false, true); |
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258 } |
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259 |
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260 static void CopyStringType3(DcmDirectoryRecord& target, |
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261 DcmDataset& source, |
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262 Encoding encoding, |
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263 bool hasCodeExtensions, |
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264 const DcmTagKey& key) |
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265 { |
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266 CopyString(target, source, encoding, hasCodeExtensions, key, true, true); |
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267 } |
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268 |
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269 |
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270 public: |
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271 PImpl() : |
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272 utc_(true), // By default, use UTC (universal time, not local time) |
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273 fileSetId_("ORTHANC_MEDIA"), |
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274 extendedSopClass_(false) |
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275 { |
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276 } |
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277 |
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278 bool IsUtcUsed() const |
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279 { |
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280 return utc_; |
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281 } |
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282 |
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283 |
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284 void SetUtcUsed(bool utc) |
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285 { |
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286 utc_ = utc; |
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287 } |
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288 |
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289 void EnableExtendedSopClass(bool enable) |
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290 { |
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291 if (enable) |
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292 { |
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293 LOG(WARNING) << "Generating a DICOMDIR with type 3 attributes, " |
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294 << "which leads to an Extended SOP Class"; |
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295 } |
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296 |
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297 extendedSopClass_ = enable; |
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298 } |
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299 |
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300 bool IsExtendedSopClass() const |
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301 { |
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302 return extendedSopClass_; |
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303 } |
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304 |
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305 void FillPatient(DcmDirectoryRecord& record, |
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306 DcmDataset& dicom, |
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307 Encoding encoding, |
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308 bool hasCodeExtensions) |
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309 { |
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310 // cf. "DicomDirInterface::buildPatientRecord()" |
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311 |
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312 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_PatientID); |
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313 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_PatientName); |
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314 } |
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315 |
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316 void FillStudy(DcmDirectoryRecord& record, |
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317 DcmDataset& dicom, |
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318 Encoding encoding, |
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319 bool hasCodeExtensions) |
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320 { |
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321 // cf. "DicomDirInterface::buildStudyRecord()" |
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322 |
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323 std::string nowDate, nowTime; |
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324 SystemToolbox::GetNowDicom(nowDate, nowTime, utc_); |
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325 |
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326 std::string studyDate; |
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327 if (!GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_StudyDate) && |
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328 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_SeriesDate) && |
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329 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_AcquisitionDate) && |
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330 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_ContentDate)) |
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331 { |
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332 studyDate = nowDate; |
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333 } |
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334 |
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335 std::string studyTime; |
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336 if (!GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_StudyTime) && |
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337 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_SeriesTime) && |
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338 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_AcquisitionTime) && |
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339 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_ContentTime)) |
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340 { |
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341 studyTime = nowTime; |
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342 } |
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343 |
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344 /* copy attribute values from dataset to study record */ |
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345 SetTagValue(record, DCM_StudyDate, studyDate); |
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346 SetTagValue(record, DCM_StudyTime, studyTime); |
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347 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_StudyDescription); |
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348 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_StudyInstanceUID); |
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349 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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350 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_StudyID); |
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351 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_AccessionNumber); |
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352 } |
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353 |
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354 void FillSeries(DcmDirectoryRecord& record, |
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355 DcmDataset& dicom, |
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356 Encoding encoding, |
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357 bool hasCodeExtensions) |
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358 { |
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359 // cf. "DicomDirInterface::buildSeriesRecord()" |
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360 |
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361 /* copy attribute values from dataset to series record */ |
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362 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_Modality); |
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363 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_SeriesInstanceUID); |
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364 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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365 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_SeriesNumber); |
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366 |
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367 // Add extended (non-standard) type 3 tags, those are not generated by DCMTK |
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368 // http://dicom.nema.org/medical/Dicom/2016a/output/chtml/part02/sect_7.3.html |
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369 // https://groups.google.com/d/msg/orthanc-users/Y7LOvZMDeoc/9cp3kDgxAwAJ |
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370 if (extendedSopClass_) |
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371 { |
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372 CopyStringType3(record, dicom, encoding, hasCodeExtensions, DCM_SeriesDescription); |
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373 } |
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374 } |
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375 |
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376 void FillInstance(DcmDirectoryRecord& record, |
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377 DcmDataset& dicom, |
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378 Encoding encoding, |
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379 bool hasCodeExtensions, |
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380 DcmMetaInfo& metaInfo, |
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381 const char* path) |
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382 { |
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383 // cf. "DicomDirInterface::buildImageRecord()" |
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384 |
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385 /* copy attribute values from dataset to image record */ |
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386 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_InstanceNumber); |
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387 //CopyElementType1C(record, dicom, encoding, hasCodeExtensions, DCM_ImageType); |
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388 |
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389 // REMOVED since 0.9.7: copyElementType1C(dicom, DCM_ReferencedImageSequence, record); |
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390 |
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391 std::string sopClassUid, sopInstanceUid, transferSyntaxUid; |
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392 if (!GetUtf8TagValue(sopClassUid, dicom, encoding, hasCodeExtensions, DCM_SOPClassUID) || |
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393 !GetUtf8TagValue(sopInstanceUid, dicom, encoding, hasCodeExtensions, DCM_SOPInstanceUID) || |
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394 !GetUtf8TagValue(transferSyntaxUid, metaInfo, encoding, hasCodeExtensions, DCM_TransferSyntaxUID)) |
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395 { |
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396 throw OrthancException(ErrorCode_BadFileFormat); |
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397 } |
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398 |
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399 SetTagValue(record, DCM_ReferencedFileID, path); |
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400 SetTagValue(record, DCM_ReferencedSOPClassUIDInFile, sopClassUid); |
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401 SetTagValue(record, DCM_ReferencedSOPInstanceUIDInFile, sopInstanceUid); |
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402 SetTagValue(record, DCM_ReferencedTransferSyntaxUIDInFile, transferSyntaxUid); |
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403 } |
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404 |
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405 |
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406 |
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407 bool CreateResource(DcmDirectoryRecord*& target, |
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408 ResourceType level, |
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409 ParsedDicomFile& dicom, |
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410 const char* filename, |
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411 const char* path) |
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412 { |
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413 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset(); |
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414 |
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415 bool hasCodeExtensions; |
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416 Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); |
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417 |
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418 bool found; |
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419 std::string id; |
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420 E_DirRecType type; |
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421 |
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422 switch (level) |
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423 { |
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424 case ResourceType_Patient: |
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425 if (!GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_PatientID)) |
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426 { |
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427 // Be tolerant about missing patient ID. Fixes issue #124 |
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428 // (GET /studies/ID/media fails for certain dicom file). |
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429 id = ""; |
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430 } |
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431 |
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432 found = true; |
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433 type = ERT_Patient; |
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434 break; |
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435 |
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436 case ResourceType_Study: |
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437 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_StudyInstanceUID); |
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438 type = ERT_Study; |
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439 break; |
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440 |
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441 case ResourceType_Series: |
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3107
diff
changeset
|
442 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_SeriesInstanceUID); |
1121
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
443 type = ERT_Series; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
444 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
445 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
446 case ResourceType_Instance: |
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
447 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_SOPInstanceUID); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
448 type = ERT_Image; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
449 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
450 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
451 default: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
452 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
453 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
454 |
1885
5be57564ffc4
refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
455 if (!found) |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
456 { |
1885
5be57564ffc4
refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
457 throw OrthancException(ErrorCode_BadFileFormat); |
1121
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
458 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
459 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
460 IndexKey key = std::make_pair(level, std::string(id.c_str())); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
461 Index::iterator it = index_.find(key); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
462 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
463 if (it != index_.end()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
464 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
465 target = it->second; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
466 return false; // Already existing |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
467 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
468 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
469 std::auto_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename)); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
470 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
471 switch (level) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
472 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
473 case ResourceType_Patient: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
474 FillPatient(*record, dataset, encoding, hasCodeExtensions); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
475 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
476 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
477 case ResourceType_Study: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
478 FillStudy(*record, dataset, encoding, hasCodeExtensions); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
479 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
480 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
481 case ResourceType_Series: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
482 FillSeries(*record, dataset, encoding, hasCodeExtensions); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
483 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
484 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
485 case ResourceType_Instance: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
486 FillInstance(*record, dataset, encoding, hasCodeExtensions, *dicom.GetDcmtkObject().getMetaInfo(), path); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
487 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
488 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
489 default: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
490 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
491 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
492 |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
493 CopyStringType1C(*record, dataset, encoding, hasCodeExtensions, DCM_SpecificCharacterSet); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
494 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
495 target = record.get(); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
496 GetRoot().insertSub(record.release()); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
497 index_[key] = target; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
498 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
499 return true; // Newly created |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
500 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
501 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
502 void Read(std::string& s) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
503 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
504 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
505 EET_UndefinedLength /*encodingType*/, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
506 EGL_withoutGL /*groupLength*/).good()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
507 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
508 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
509 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
510 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
511 file_.Read(s); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
512 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
513 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
514 void SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
515 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
516 dir_.reset(NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
517 fileSetId_ = id; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
518 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
519 }; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
520 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
521 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
522 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
523 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
524 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
525 |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
526 void DicomDirWriter::SetUtcUsed(bool utc) |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
527 { |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
528 pimpl_->SetUtcUsed(utc); |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
529 } |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
530 |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
531 bool DicomDirWriter::IsUtcUsed() const |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
532 { |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
533 return pimpl_->IsUtcUsed(); |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
534 } |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
535 |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
536 void DicomDirWriter::SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
537 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
538 pimpl_->SetFileSetId(id); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
539 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
540 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
541 void DicomDirWriter::Add(const std::string& directory, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
542 const std::string& filename, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
543 ParsedDicomFile& dicom) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
544 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
545 std::string path; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
546 if (directory.empty()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
547 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
548 path = filename; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
549 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
550 else |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
551 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
552 if (directory[directory.length() - 1] == '/' || |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
553 directory[directory.length() - 1] == '\\') |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
554 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
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555 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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556 } |
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557 |
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558 path = directory + '\\' + filename; |
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559 } |
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560 |
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561 DcmDirectoryRecord* instance; |
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562 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, dicom, filename.c_str(), path.c_str()); |
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563 if (isNewInstance) |
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564 { |
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565 DcmDirectoryRecord* series; |
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566 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, dicom, filename.c_str(), NULL); |
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567 series->insertSub(instance); |
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568 |
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569 if (isNewSeries) |
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570 { |
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571 DcmDirectoryRecord* study; |
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572 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, dicom, filename.c_str(), NULL); |
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573 study->insertSub(series); |
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574 |
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575 if (isNewStudy) |
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576 { |
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577 DcmDirectoryRecord* patient; |
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578 pimpl_->CreateResource(patient, ResourceType_Patient, dicom, filename.c_str(), NULL); |
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579 patient->insertSub(study); |
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580 } |
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581 } |
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582 } |
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583 } |
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584 |
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585 void DicomDirWriter::Encode(std::string& target) |
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586 { |
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587 pimpl_->Read(target); |
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588 } |
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589 |
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590 |
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591 void DicomDirWriter::EnableExtendedSopClass(bool enable) |
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592 { |
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593 pimpl_->EnableExtendedSopClass(enable); |
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594 } |
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595 |
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596 |
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597 bool DicomDirWriter::IsExtendedSopClass() const |
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598 { |
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599 return pimpl_->IsExtendedSopClass(); |
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600 } |
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601 } |