Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3090:31244604f617 db-changes
starting optimization of SeriesIndex::GetSeriesStatus()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 05 Jan 2019 12:17:30 +0100 |
parents | df1b17be20f6 |
children | 476cba12c2b0 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 static void CopyListToVector(std::vector<std::string>& target, |
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62 const std::list<std::string>& source) |
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63 { |
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64 target.resize(source.size()); |
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65 |
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66 size_t pos = 0; |
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67 |
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68 for (std::list<std::string>::const_iterator |
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69 it = source.begin(); it != source.end(); ++it) |
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70 { |
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71 target[pos] = *it; |
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72 pos ++; |
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73 } |
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74 } |
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75 |
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76 |
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77 class ServerIndex::Listener : public IDatabaseListener |
0 | 78 { |
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79 private: |
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80 struct FileToRemove |
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81 { |
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82 private: |
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83 std::string uuid_; |
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84 FileContentType type_; |
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85 |
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86 public: |
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87 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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88 type_(info.GetContentType()) |
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89 { |
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90 } |
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91 |
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92 const std::string& GetUuid() const |
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93 { |
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94 return uuid_; |
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95 } |
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96 |
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97 FileContentType GetContentType() const |
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98 { |
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99 return type_; |
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100 } |
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101 }; |
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102 |
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103 ServerContext& context_; |
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104 bool hasRemainingLevel_; |
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105 ResourceType remainingType_; |
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106 std::string remainingPublicId_; |
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107 std::list<FileToRemove> pendingFilesToRemove_; |
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108 std::list<ServerIndexChange> pendingChanges_; |
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109 uint64_t sizeOfFilesToRemove_; |
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110 bool insideTransaction_; |
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111 |
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112 void Reset() |
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113 { |
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114 sizeOfFilesToRemove_ = 0; |
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115 hasRemainingLevel_ = false; |
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116 pendingFilesToRemove_.clear(); |
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117 pendingChanges_.clear(); |
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118 } |
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119 |
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120 public: |
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121 Listener(ServerContext& context) : context_(context), |
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122 insideTransaction_(false) |
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123 { |
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124 Reset(); |
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125 assert(ResourceType_Patient < ResourceType_Study && |
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126 ResourceType_Study < ResourceType_Series && |
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127 ResourceType_Series < ResourceType_Instance); |
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128 } |
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129 |
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130 void StartTransaction() |
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131 { |
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132 Reset(); |
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133 insideTransaction_ = true; |
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134 } |
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135 |
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136 void EndTransaction() |
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137 { |
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138 insideTransaction_ = false; |
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139 } |
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140 |
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141 uint64_t GetSizeOfFilesToRemove() |
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142 { |
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143 return sizeOfFilesToRemove_; |
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144 } |
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145 |
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146 void CommitFilesToRemove() |
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147 { |
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148 for (std::list<FileToRemove>::const_iterator |
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149 it = pendingFilesToRemove_.begin(); |
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150 it != pendingFilesToRemove_.end(); ++it) |
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151 { |
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152 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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153 } |
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154 } |
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155 |
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156 void CommitChanges() |
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157 { |
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158 for (std::list<ServerIndexChange>::const_iterator |
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159 it = pendingChanges_.begin(); |
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160 it != pendingChanges_.end(); ++it) |
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161 { |
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162 context_.SignalChange(*it); |
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163 } |
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164 } |
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165 |
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166 virtual void SignalRemainingAncestor(ResourceType parentType, |
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167 const std::string& publicId) |
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168 { |
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169 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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170 |
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171 if (hasRemainingLevel_) |
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172 { |
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173 if (parentType < remainingType_) |
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174 { |
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175 remainingType_ = parentType; |
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176 remainingPublicId_ = publicId; |
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177 } |
1158 | 178 } |
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179 else |
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180 { |
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181 hasRemainingLevel_ = true; |
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182 remainingType_ = parentType; |
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183 remainingPublicId_ = publicId; |
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184 } |
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185 } |
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186 |
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187 virtual void SignalFileDeleted(const FileInfo& info) |
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188 { |
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189 assert(Toolbox::IsUuid(info.GetUuid())); |
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190 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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191 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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192 } |
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193 |
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194 virtual void SignalChange(const ServerIndexChange& change) |
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195 { |
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196 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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197 << EnumerationToString(change.GetResourceType()) << ": " |
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198 << EnumerationToString(change.GetChangeType()); |
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199 |
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200 if (insideTransaction_) |
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201 { |
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202 pendingChanges_.push_back(change); |
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203 } |
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204 else |
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205 { |
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206 context_.SignalChange(change); |
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207 } |
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208 } |
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209 |
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210 bool HasRemainingLevel() const |
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211 { |
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212 return hasRemainingLevel_; |
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213 } |
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214 |
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215 ResourceType GetRemainingType() const |
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216 { |
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217 assert(HasRemainingLevel()); |
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218 return remainingType_; |
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219 } |
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220 |
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221 const std::string& GetRemainingPublicId() const |
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222 { |
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223 assert(HasRemainingLevel()); |
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224 return remainingPublicId_; |
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225 } |
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226 }; |
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228 | |
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229 class ServerIndex::Transaction |
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230 { |
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231 private: |
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232 ServerIndex& index_; |
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233 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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234 bool isCommitted_; |
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235 |
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236 public: |
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237 Transaction(ServerIndex& index) : |
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238 index_(index), |
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239 isCommitted_(false) |
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240 { |
1247 | 241 transaction_.reset(index_.db_.StartTransaction()); |
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242 transaction_->Begin(); |
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243 |
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244 index_.listener_->StartTransaction(); |
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245 } |
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246 |
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247 ~Transaction() |
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248 { |
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249 index_.listener_->EndTransaction(); |
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250 |
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251 if (!isCommitted_) |
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252 { |
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253 transaction_->Rollback(); |
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254 } |
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255 } |
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256 |
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257 void Commit(uint64_t sizeOfAddedFiles) |
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258 { |
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259 if (!isCommitted_) |
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260 { |
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261 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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262 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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263 |
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264 transaction_->Commit(delta); |
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265 |
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266 // We can remove the files once the SQLite transaction has |
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267 // been successfully committed. Some files might have to be |
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268 // deleted because of recycling. |
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269 index_.listener_->CommitFilesToRemove(); |
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270 |
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271 // Send all the pending changes to the Orthanc plugins |
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272 index_.listener_->CommitChanges(); |
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273 |
278
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274 isCommitted_ = true; |
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275 } |
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276 } |
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277 }; |
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278 |
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279 |
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280 class ServerIndex::UnstableResourcePayload |
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281 { |
1177
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282 private: |
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283 ResourceType type_; |
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284 std::string publicId_; |
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285 boost::posix_time::ptime time_; |
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286 |
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287 public: |
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288 UnstableResourcePayload() : type_(ResourceType_Instance) |
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289 { |
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290 } |
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291 |
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292 UnstableResourcePayload(Orthanc::ResourceType type, |
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293 const std::string& publicId) : |
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294 type_(type), |
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295 publicId_(publicId) |
511
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296 { |
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297 time_ = boost::posix_time::second_clock::local_time(); |
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298 } |
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299 |
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300 unsigned int GetAge() const |
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301 { |
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302 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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303 } |
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304 |
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305 ResourceType GetResourceType() const |
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306 { |
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307 return type_; |
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308 } |
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309 |
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310 const std::string& GetPublicId() const |
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311 { |
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312 return publicId_; |
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313 } |
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314 }; |
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315 |
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316 |
3027 | 317 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
318 { | |
319 private: | |
320 class TagInfo | |
321 { | |
322 private: | |
323 ResourceType level_; | |
324 DicomTagType type_; | |
325 | |
326 public: | |
327 TagInfo() | |
328 { | |
329 } | |
330 | |
331 TagInfo(ResourceType level, | |
332 DicomTagType type) : | |
333 level_(level), | |
334 type_(type) | |
335 { | |
336 } | |
337 | |
338 ResourceType GetLevel() const | |
339 { | |
340 return level_; | |
341 } | |
342 | |
343 DicomTagType GetType() const | |
344 { | |
345 return type_; | |
346 } | |
347 }; | |
348 | |
349 typedef std::map<DicomTag, TagInfo> Registry; | |
350 | |
351 | |
352 Registry registry_; | |
353 | |
354 void LoadTags(ResourceType level) | |
355 { | |
356 const DicomTag* tags = NULL; | |
357 size_t size; | |
358 | |
359 ServerToolbox::LoadIdentifiers(tags, size, level); | |
360 | |
361 for (size_t i = 0; i < size; i++) | |
362 { | |
363 if (registry_.find(tags[i]) == registry_.end()) | |
364 { | |
365 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
366 } | |
367 else | |
368 { | |
369 // These patient-level tags are copied in the study level | |
370 assert(level == ResourceType_Study && | |
371 (tags[i] == DICOM_TAG_PATIENT_ID || | |
372 tags[i] == DICOM_TAG_PATIENT_NAME || | |
373 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
374 } | |
375 } | |
376 | |
377 DicomMap::LoadMainDicomTags(tags, size, level); | |
378 | |
379 for (size_t i = 0; i < size; i++) | |
380 { | |
381 if (registry_.find(tags[i]) == registry_.end()) | |
382 { | |
383 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
384 } | |
385 } | |
386 } | |
387 | |
388 public: | |
389 MainDicomTagsRegistry() | |
390 { | |
391 LoadTags(ResourceType_Patient); | |
392 LoadTags(ResourceType_Study); | |
393 LoadTags(ResourceType_Series); | |
394 LoadTags(ResourceType_Instance); | |
395 } | |
396 | |
397 void LookupTag(ResourceType& level, | |
398 DicomTagType& type, | |
399 const DicomTag& tag) const | |
400 { | |
401 Registry::const_iterator it = registry_.find(tag); | |
402 | |
403 if (it == registry_.end()) | |
404 { | |
405 // Default values | |
406 level = ResourceType_Instance; | |
407 type = DicomTagType_Generic; | |
408 } | |
409 else | |
410 { | |
411 level = it->second.GetLevel(); | |
412 type = it->second.GetType(); | |
413 } | |
414 } | |
415 }; | |
416 | |
417 | |
212 | 418 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 419 const std::string& uuid, |
202 | 420 ResourceType expectedType) |
0 | 421 { |
206
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422 boost::mutex::scoped_lock lock(mutex_); |
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423 |
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424 Transaction t(*this); |
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425 |
202 | 426 int64_t id; |
427 ResourceType type; | |
1294 | 428 if (!db_.LookupResource(id, type, uuid) || |
202 | 429 expectedType != type) |
0 | 430 { |
431 return false; | |
432 } | |
202 | 433 |
1247 | 434 db_.DeleteResource(id); |
0 | 435 |
202 | 436 if (listener_->HasRemainingLevel()) |
0 | 437 { |
202 | 438 ResourceType type = listener_->GetRemainingType(); |
439 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 440 |
441 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 442 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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443 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 444 target["RemainingAncestor"]["ID"] = uuid; |
445 } | |
446 else | |
447 { | |
448 target["RemainingAncestor"] = Json::nullValue; | |
449 } | |
450 | |
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451 t.Commit(0); |
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452 |
0 | 453 return true; |
454 } | |
455 | |
456 | |
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457 void ServerIndex::FlushThread(ServerIndex* that, |
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458 unsigned int threadSleep) |
206
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459 { |
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460 // By default, wait for 10 seconds before flushing |
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461 unsigned int sleep = 10; |
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462 |
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463 try |
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464 { |
744 | 465 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 466 std::string sleepString; |
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467 |
1247 | 468 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 469 Toolbox::IsInteger(sleepString)) |
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470 { |
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471 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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472 } |
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473 } |
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474 catch (boost::bad_lexical_cast&) |
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475 { |
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476 } |
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477 |
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478 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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479 |
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480 unsigned int count = 0; |
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481 |
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482 while (!that->done_) |
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483 { |
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484 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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485 count++; |
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486 if (count < sleep) |
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487 { |
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488 continue; |
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489 } |
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490 |
2217 | 491 Logging::Flush(); |
492 | |
511
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493 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 494 that->db_.FlushToDisk(); |
511
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495 count = 0; |
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496 } |
511
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497 |
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498 LOG(INFO) << "Stopping the database flushing thread"; |
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499 } |
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500 |
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501 |
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502 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 503 const DicomMap& dicomSummary) |
504 { | |
505 try | |
506 { | |
656 | 507 const DicomValue* value; |
508 const DicomValue* value2; | |
509 | |
433 | 510 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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511 !value->IsNull() && |
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512 !value->IsBinary() && |
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513 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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514 !value2->IsNull() && |
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515 !value2->IsBinary()) |
433 | 516 { |
517 // Patch for series with temporal positions thanks to Will Ryder | |
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518 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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519 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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520 target = imagesInAcquisition * countTemporalPositions; |
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521 return (target > 0); |
433 | 522 } |
523 | |
524 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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525 !value->IsNull() && |
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526 !value->IsBinary() && |
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527 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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528 !value2->IsBinary() && |
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529 !value2->IsNull()) |
433 | 530 { |
531 // Support of Cardio-PET images | |
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532 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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533 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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534 target = numberOfSlices * numberOfTimeSlices; |
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535 return (target > 0); |
433 | 536 } |
537 | |
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538 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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539 !value->IsNull() && |
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540 !value->IsBinary()) |
433 | 541 { |
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542 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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543 return (target > 0); |
433 | 544 } |
545 } | |
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546 catch (OrthancException&) |
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547 { |
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548 } |
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549 catch (boost::bad_lexical_cast&) |
433 | 550 { |
551 } | |
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552 |
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553 return false; |
433 | 554 } |
555 | |
556 | |
1237 | 557 |
558 | |
1238 | 559 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 560 int64_t id, |
561 MetadataType type) | |
562 { | |
1238 | 563 std::string s; |
1247 | 564 if (!db_.LookupMetadata(s, id, type)) |
1237 | 565 { |
566 return false; | |
567 } | |
568 | |
569 try | |
570 { | |
1238 | 571 result = boost::lexical_cast<int64_t>(s); |
1237 | 572 return true; |
573 } | |
574 catch (boost::bad_lexical_cast&) | |
575 { | |
576 return false; | |
577 } | |
578 } | |
579 | |
580 | |
1297 | 581 void ServerIndex::LogChange(int64_t internalId, |
582 ChangeType changeType, | |
583 ResourceType resourceType, | |
584 const std::string& publicId) | |
585 { | |
586 ServerIndexChange change(changeType, resourceType, publicId); | |
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587 |
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588 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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589 { |
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590 db_.LogChange(internalId, change); |
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591 } |
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592 |
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593 assert(listener_.get() != NULL); |
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594 listener_->SignalChange(change); |
1297 | 595 } |
596 | |
1237 | 597 |
598 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
599 { | |
600 std::string oldValue; | |
601 | |
1247 | 602 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 603 { |
604 uint64_t oldNumber; | |
605 | |
606 try | |
607 { | |
608 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 609 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 610 return oldNumber + 1; |
611 } | |
612 catch (boost::bad_lexical_cast&) | |
613 { | |
614 throw OrthancException(ErrorCode_InternalError); | |
615 } | |
616 } | |
617 else | |
618 { | |
619 // Initialize the sequence at "1" | |
1247 | 620 db_.SetGlobalProperty(property, "1"); |
1237 | 621 return 1; |
622 } | |
623 } | |
624 | |
625 | |
626 | |
226
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627 ServerIndex::ServerIndex(ServerContext& context, |
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628 IDatabaseWrapper& db, |
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629 unsigned int threadSleep) : |
511
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630 done_(false), |
1247 | 631 db_(db), |
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632 maximumStorageSize_(0), |
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633 maximumPatients_(0), |
3027 | 634 overwrite_(false), |
635 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
186
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636 { |
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637 listener_.reset(new Listener(context)); |
1247 | 638 db_.SetListener(*listener_); |
180
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639 |
269
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640 // Initial recycling if the parameters have changed since the last |
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641 // execution of Orthanc |
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642 StandaloneRecycling(); |
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643 |
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644 if (db.HasFlushToDisk()) |
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645 { |
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646 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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647 } |
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648 |
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649 unstableResourcesMonitorThread_ = boost::thread |
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650 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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651 } |
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652 |
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653 |
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654 |
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655 ServerIndex::~ServerIndex() |
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656 { |
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657 if (!done_) |
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658 { |
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659 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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660 Stop(); |
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661 } |
0 | 662 } |
663 | |
664 | |
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665 |
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666 void ServerIndex::Stop() |
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667 { |
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668 if (!done_) |
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669 { |
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670 done_ = true; |
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671 |
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672 if (db_.HasFlushToDisk() && |
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673 flushThread_.joinable()) |
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674 { |
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675 flushThread_.join(); |
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676 } |
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677 |
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678 if (unstableResourcesMonitorThread_.joinable()) |
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679 { |
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680 unstableResourcesMonitorThread_.join(); |
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681 } |
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682 } |
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683 } |
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684 |
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685 |
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686 static void SetInstanceMetadata(ResourcesContent& content, |
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687 std::map<MetadataType, std::string>& instanceMetadata, |
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688 int64_t instance, |
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689 MetadataType metadata, |
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690 const std::string& value) |
2188 | 691 { |
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692 content.AddMetadata(instance, metadata, value); |
2188 | 693 instanceMetadata[metadata] = value; |
694 } | |
695 | |
696 | |
3080
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697 void ServerIndex::SignalNewResource(ChangeType changeType, |
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698 ResourceType level, |
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699 const std::string& publicId, |
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700 int64_t internalId) |
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701 { |
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702 ServerIndexChange change(changeType, level, publicId); |
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703 db_.LogChange(internalId, change); |
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704 |
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705 assert(listener_.get() != NULL); |
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706 listener_->SignalChange(change); |
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707 } |
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708 |
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diff
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|
709 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
710 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 711 DicomInstanceToStore& instanceToStore, |
712 const Attachments& attachments) | |
0 | 713 { |
206
4453a010d0db
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
714 boost::mutex::scoped_lock lock(mutex_); |
0 | 715 |
1822 | 716 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
717 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
718 | |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
719 int64_t expectedInstances; |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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|
720 const bool hasExpectedInstances = |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
721 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
722 |
1006
649d47854314
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parents:
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diff
changeset
|
723 instanceMetadata.clear(); |
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
724 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
725 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
726 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
727 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
728 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
729 |
0 | 730 try |
731 { | |
278
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more efficient determination of storage size for recycling
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|
732 Transaction t(*this); |
0 | 733 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
734 IDatabaseWrapper::CreateInstanceResult status; |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
735 int64_t instanceId; |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
736 |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
737 // Check whether this instance is already stored |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
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|
738 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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new extension for database plugin SDK: createInstance
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diff
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|
739 hashStudy, hashSeries, hashInstance)) |
0 | 740 { |
3082
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|
741 // The instance already exists |
847a0ed92654
new extension for database plugin SDK: createInstance
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diff
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|
742 |
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diff
changeset
|
743 if (overwrite_) |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
744 { |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
745 // Overwrite the old instance |
847a0ed92654
new extension for database plugin SDK: createInstance
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diff
changeset
|
746 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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new extension for database plugin SDK: createInstance
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diff
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|
747 db_.DeleteResource(instanceId); |
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diff
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|
748 |
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parents:
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diff
changeset
|
749 // Re-create the instance, now that the old one is removed |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
750 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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new extension for database plugin SDK: createInstance
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parents:
3080
diff
changeset
|
751 hashStudy, hashSeries, hashInstance)) |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
752 { |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 throw OrthancException(ErrorCode_InternalError); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
754 } |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
755 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
756 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
757 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
758 // Do nothing if the instance already exists and overwriting is disabled |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
759 db_.GetAllMetadata(instanceMetadata, instanceId); |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
760 return StoreStatus_AlreadyStored; |
847a0ed92654
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parents:
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diff
changeset
|
761 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
762 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
763 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
764 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
765 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
766 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
767 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
768 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
769 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
770 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
771 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
772 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
776 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
777 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 778 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
779 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
780 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
781 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
782 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
783 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
784 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
785 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
786 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
787 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
788 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
789 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
790 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
791 // Ensure there is enough room in the storage for the new instance |
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diff
changeset
|
792 uint64_t instanceSize = 0; |
4bc02e2254ec
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diff
changeset
|
793 for (Attachments::const_iterator it = attachments.begin(); |
656 | 794 it != attachments.end(); ++it) |
268
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preparing ServerIndex for recycling
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diff
changeset
|
795 { |
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diff
changeset
|
796 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
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diff
changeset
|
797 } |
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
798 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
799 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
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grouping the setting of metadata
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diff
changeset
|
800 |
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diff
changeset
|
801 |
74e3e48aa9bd
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diff
changeset
|
802 // Attach the files to the newly created instance |
74e3e48aa9bd
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diff
changeset
|
803 for (Attachments::const_iterator it = attachments.begin(); |
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diff
changeset
|
804 it != attachments.end(); ++it) |
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diff
changeset
|
805 { |
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diff
changeset
|
806 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
807 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
809 |
0 | 810 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
811 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
812 |
3086
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diff
changeset
|
813 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
814 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
815 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
816 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
817 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
818 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
819 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
820 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
821 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
822 if (status.isNewStudy_) |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
823 { |
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IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
825 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
826 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
827 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
828 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
829 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
830 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
831 |
3086
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diff
changeset
|
832 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3083
diff
changeset
|
833 // Attach the user-specified metadata |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
834 |
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|
835 for (MetadataMap::const_iterator |
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diff
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|
836 it = metadata.begin(); it != metadata.end(); ++it) |
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|
837 { |
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diff
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|
838 switch (it->first.first) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
839 { |
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diff
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|
840 case ResourceType_Patient: |
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diff
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|
841 content.AddMetadata(status.patientId_, it->first.second, it->second); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
842 break; |
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diff
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|
843 |
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diff
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|
844 case ResourceType_Study: |
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diff
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|
845 content.AddMetadata(status.studyId_, it->first.second, it->second); |
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diff
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|
846 break; |
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|
847 |
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diff
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|
848 case ResourceType_Series: |
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parents:
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diff
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|
849 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
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diff
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|
850 break; |
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|
851 |
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diff
changeset
|
852 case ResourceType_Instance: |
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parents:
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diff
changeset
|
853 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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diff
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|
854 it->first.second, it->second); |
74e3e48aa9bd
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diff
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|
855 break; |
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|
856 |
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diff
changeset
|
857 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
858 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
859 } |
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|
860 } |
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diff
changeset
|
861 |
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changeset
|
862 |
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changeset
|
863 // Attach the auto-computed metadata for the patient/study/series levels |
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grouping the setting of metadata
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diff
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|
864 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
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grouping the setting of metadata
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parents:
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diff
changeset
|
865 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
866 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
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grouping the setting of metadata
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parents:
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diff
changeset
|
867 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
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parents:
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diff
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|
868 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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3087
diff
changeset
|
869 if (status.isNewSeries_ && |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
870 hasExpectedInstances) |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
871 { |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
872 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
873 boost::lexical_cast<std::string>(expectedInstances)); |
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
874 } |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
875 |
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diff
changeset
|
876 |
3086
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changeset
|
877 // Attach the auto-computed metadata for the instance level, |
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parents:
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|
878 // reflecting these additions into the input metadata map |
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|
879 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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|
880 MetadataType_Instance_ReceptionDate, now); |
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parents:
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changeset
|
881 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
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parents:
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changeset
|
882 instanceToStore.GetOrigin().GetRemoteAetC()); |
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diff
changeset
|
883 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
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diff
changeset
|
884 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
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|
885 |
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changeset
|
886 |
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|
887 { |
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|
888 std::string s; |
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parents:
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|
889 |
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|
890 if (instanceToStore.LookupTransferSyntax(s)) |
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|
891 { |
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diff
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|
892 // New in Orthanc 1.2.0 |
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|
893 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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|
894 MetadataType_Instance_TransferSyntax, s); |
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|
895 } |
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|
896 |
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|
897 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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|
898 { |
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changeset
|
899 // New in Orthanc 1.4.0 |
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|
900 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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|
901 MetadataType_Instance_RemoteIp, s); |
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|
902 } |
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|
903 |
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changeset
|
904 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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diff
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|
905 { |
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|
906 // New in Orthanc 1.4.0 |
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|
907 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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changeset
|
908 MetadataType_Instance_CalledAet, s); |
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|
909 } |
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changeset
|
910 |
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changeset
|
911 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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|
912 { |
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changeset
|
913 // New in Orthanc 1.4.0 |
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changeset
|
914 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
changeset
|
915 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
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parents:
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diff
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|
916 } |
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parents:
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diff
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|
917 } |
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|
918 |
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|
919 |
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|
920 const DicomValue* value; |
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|
921 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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|
922 !value->IsNull() && |
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|
923 !value->IsBinary()) |
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diff
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|
924 { |
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diff
changeset
|
925 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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diff
changeset
|
926 MetadataType_Instance_SopClassUid, value->GetContent()); |
74e3e48aa9bd
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parents:
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diff
changeset
|
927 } |
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diff
changeset
|
928 |
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diff
changeset
|
929 |
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diff
changeset
|
930 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
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grouping the setting of metadata
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diff
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|
931 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
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parents:
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diff
changeset
|
932 { |
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parents:
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diff
changeset
|
933 if (!value->IsNull() && |
74e3e48aa9bd
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parents:
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changeset
|
934 !value->IsBinary()) |
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diff
changeset
|
935 { |
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changeset
|
936 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
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3083
diff
changeset
|
937 MetadataType_Instance_IndexInSeries, value->GetContent()); |
74e3e48aa9bd
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parents:
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diff
changeset
|
938 } |
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diff
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|
939 } |
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diff
changeset
|
940 |
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diff
changeset
|
941 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
942 db_.SetResourcesContent(content); |
3080
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started refactoring of ServerIndex::Store()
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3075
diff
changeset
|
943 } |
3086
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|
944 |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
945 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
946 // Check whether the series of this new instance is now completed |
3087 | 947 // TODO - SPEED THIS UP |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
948 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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logging of completed series
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diff
changeset
|
949 if (seriesStatus == SeriesStatus_Complete) |
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|
950 { |
3080
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started refactoring of ServerIndex::Store()
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diff
changeset
|
951 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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952 } |
3087 | 953 |
205
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954 |
511
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|
955 // Mark the parent resources of this instance as unstable |
3080
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|
956 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
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|
957 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
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|
958 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
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959 |
278
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960 t.Commit(instanceSize); |
268
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961 |
0 | 962 return StoreStatus_Success; |
963 } | |
62 | 964 catch (OrthancException& e) |
0 | 965 { |
1247 | 966 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 967 } |
968 | |
969 return StoreStatus_Failure; | |
970 } | |
971 | |
972 | |
238 | 973 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 974 { |
206
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975 boost::mutex::scoped_lock lock(mutex_); |
238 | 976 target = Json::objectValue; |
0 | 977 |
3020
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|
978 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 979 uint64_t us = db_.GetTotalUncompressedSize(); |
440
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980 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 981 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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|
982 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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983 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 984 |
1247 | 985 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
986 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
987 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
988 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 989 } |
990 | |
187
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991 |
3090
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|
992 |
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993 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
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|
994 int64_t expectedNumberOfInstances) |
199 | 995 { |
996 // Loop over the instances of this series | |
997 std::list<int64_t> children; | |
1247 | 998 db_.GetChildrenInternalId(children, id); |
199 | 999 |
1238 | 1000 std::set<int64_t> instances; |
199 | 1001 for (std::list<int64_t>::const_iterator |
656 | 1002 it = children.begin(); it != children.end(); ++it) |
199 | 1003 { |
1004 // Get the index of this instance in the series | |
1238 | 1005 int64_t index; |
1006 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 1007 { |
1008 return SeriesStatus_Unknown; | |
1009 } | |
1010 | |
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1011 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1012 { |
1013 // Out-of-range instance index | |
1014 return SeriesStatus_Inconsistent; | |
1015 } | |
1016 | |
1017 if (instances.find(index) != instances.end()) | |
1018 { | |
1019 // Twice the same instance index | |
1020 return SeriesStatus_Inconsistent; | |
1021 } | |
1022 | |
1023 instances.insert(index); | |
1024 } | |
1025 | |
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|
1026 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1027 { |
1028 return SeriesStatus_Complete; | |
1029 } | |
1030 else | |
1031 { | |
1032 return SeriesStatus_Missing; | |
1033 } | |
1034 } | |
1035 | |
1036 | |
3090
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|
1037 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
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1038 { |
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1039 // Get the expected number of instances in this series (from the metadata) |
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1040 int64_t expected; |
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1041 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) |
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|
1042 { |
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1043 return SeriesStatus_Unknown; |
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1044 } |
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1045 else |
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1046 { |
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1047 return GetSeriesStatus(id, expected); |
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|
1048 } |
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1049 } |
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|
1050 |
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|
1051 |
202 | 1052 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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diff
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|
1053 int64_t resourceId, |
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1054 ResourceType resourceType) |
198
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1055 { |
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1056 DicomMap tags; |
1247 | 1057 db_.GetMainDicomTags(tags, resourceId); |
1676
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|
1058 |
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1059 if (resourceType == ResourceType_Study) |
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1060 { |
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|
1061 DicomMap t1, t2; |
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|
1062 tags.ExtractStudyInformation(t1); |
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|
1063 tags.ExtractPatientInformation(t2); |
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|
1064 |
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|
1065 target["MainDicomTags"] = Json::objectValue; |
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|
1066 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
1067 |
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|
1068 target["PatientMainDicomTags"] = Json::objectValue; |
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|
1069 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
1070 } |
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|
1071 else |
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|
1072 { |
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diff
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|
1073 target["MainDicomTags"] = Json::objectValue; |
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changeset
|
1074 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1075 } |
198
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1076 } |
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1077 |
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1078 |
198
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1079 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1080 const std::string& publicId, |
1081 ResourceType expectedType) | |
198
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1082 { |
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1083 result = Json::objectValue; |
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1084 |
206
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1085 boost::mutex::scoped_lock lock(mutex_); |
199 | 1086 |
198
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1087 // Lookup for the requested resource |
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1088 int64_t id; |
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1089 ResourceType type; |
1294 | 1090 if (!db_.LookupResource(id, type, publicId) || |
199 | 1091 type != expectedType) |
198
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1092 { |
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1093 return false; |
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1094 } |
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1095 |
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1096 // Find the parent resource (if it exists) |
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1097 if (type != ResourceType_Patient) |
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1098 { |
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1099 int64_t parentId; |
1247 | 1100 if (!db_.LookupParent(parentId, id)) |
198
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1101 { |
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1102 throw OrthancException(ErrorCode_InternalError); |
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1103 } |
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1104 |
1247 | 1105 std::string parent = db_.GetPublicId(parentId); |
198
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1106 |
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1107 switch (type) |
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1108 { |
269
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1109 case ResourceType_Study: |
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1110 result["ParentPatient"] = parent; |
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1111 break; |
198
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1112 |
269
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1113 case ResourceType_Series: |
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1114 result["ParentStudy"] = parent; |
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1115 break; |
198
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1116 |
269
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1117 case ResourceType_Instance: |
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1118 result["ParentSeries"] = parent; |
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1119 break; |
198
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1120 |
269
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1121 default: |
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1122 throw OrthancException(ErrorCode_InternalError); |
198
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1123 } |
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1124 } |
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1125 |
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1126 // List the children resources |
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1127 std::list<std::string> children; |
1247 | 1128 db_.GetChildrenPublicId(children, id); |
198
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1129 |
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1130 if (type != ResourceType_Instance) |
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1131 { |
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1132 Json::Value c = Json::arrayValue; |
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1133 |
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|
1134 for (std::list<std::string>::const_iterator |
656 | 1135 it = children.begin(); it != children.end(); ++it) |
198
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1136 { |
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1137 c.append(*it); |
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1138 } |
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|
1139 |
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diff
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|
1140 switch (type) |
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|
1141 { |
269
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|
1142 case ResourceType_Patient: |
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|
1143 result["Studies"] = c; |
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diff
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|
1144 break; |
198
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diff
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|
1145 |
269
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diff
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|
1146 case ResourceType_Study: |
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diff
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|
1147 result["Series"] = c; |
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diff
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|
1148 break; |
198
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|
1149 |
269
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diff
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|
1150 case ResourceType_Series: |
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diff
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|
1151 result["Instances"] = c; |
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diff
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|
1152 break; |
198
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diff
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|
1153 |
269
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diff
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|
1154 default: |
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|
1155 throw OrthancException(ErrorCode_InternalError); |
198
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|
1156 } |
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|
1157 } |
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|
1158 |
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|
1159 // Set the resource type |
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diff
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|
1160 switch (type) |
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diff
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|
1161 { |
269
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diff
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|
1162 case ResourceType_Patient: |
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diff
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|
1163 result["Type"] = "Patient"; |
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diff
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|
1164 break; |
198
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diff
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|
1165 |
269
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diff
changeset
|
1166 case ResourceType_Study: |
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diff
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|
1167 result["Type"] = "Study"; |
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diff
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|
1168 break; |
199 | 1169 |
269
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diff
changeset
|
1170 case ResourceType_Series: |
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diff
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|
1171 { |
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diff
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|
1172 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1173 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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before refactoring of ServerIndex::GetXXX
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diff
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|
1174 |
1238 | 1175 int64_t i; |
1237 | 1176 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1177 { |
1238 | 1178 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1179 } |
269
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diff
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|
1180 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1181 { |
269
f6fdf5abe751
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268
diff
changeset
|
1182 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1183 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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199
diff
changeset
|
1184 |
269
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268
diff
changeset
|
1185 break; |
200
9c58b2b03cf0
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parents:
199
diff
changeset
|
1186 } |
9c58b2b03cf0
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parents:
199
diff
changeset
|
1187 |
269
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diff
changeset
|
1188 case ResourceType_Instance: |
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diff
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|
1189 { |
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diff
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|
1190 result["Type"] = "Instance"; |
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diff
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|
1191 |
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diff
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|
1192 FileInfo attachment; |
1247 | 1193 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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diff
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|
1194 { |
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diff
changeset
|
1195 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1196 } |
200
9c58b2b03cf0
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diff
changeset
|
1197 |
269
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diff
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|
1198 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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268
diff
changeset
|
1199 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1200 |
1238 | 1201 int64_t i; |
1237 | 1202 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1203 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
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|
1204 else |
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268
diff
changeset
|
1205 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
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diff
changeset
|
1206 |
269
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268
diff
changeset
|
1207 break; |
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268
diff
changeset
|
1208 } |
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diff
changeset
|
1209 |
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diff
changeset
|
1210 default: |
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diff
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|
1211 throw OrthancException(ErrorCode_InternalError); |
198
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diff
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|
1212 } |
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|
1213 |
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|
1214 // Record the remaining information |
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197
diff
changeset
|
1215 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1216 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
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|
1217 |
315 | 1218 std::string tmp; |
1219 | |
1247 | 1220 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1221 { |
315 | 1222 result["AnonymizedFrom"] = tmp; |
1236 | 1223 } |
315 | 1224 |
1247 | 1225 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1226 { |
315 | 1227 result["ModifiedFrom"] = tmp; |
1236 | 1228 } |
315 | 1229 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1230 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1231 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1232 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1233 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1234 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1235 |
1247 | 1236 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1237 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1238 result["LastUpdate"] = tmp; |
1236 | 1239 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1240 } |
3b735fdf320b
monitoring of stable patients/studies/series
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440
diff
changeset
|
1241 |
198
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|
1242 return true; |
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|
1243 } |
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1244 |
0 | 1245 |
232
5368bbe813cf
refactoring of attachments
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231
diff
changeset
|
1246 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
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231
diff
changeset
|
1247 const std::string& instanceUuid, |
233 | 1248 FileContentType contentType) |
0 | 1249 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1250 boost::mutex::scoped_lock lock(mutex_); |
0 | 1251 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1252 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1253 ResourceType type; |
1294 | 1254 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1255 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1256 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1257 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
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parents:
192
diff
changeset
|
1258 |
1247 | 1259 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1260 { |
233 | 1261 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1262 return true; |
5368bbe813cf
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parents:
231
diff
changeset
|
1263 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1264 else |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1265 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1266 return false; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1267 } |
192
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1268 } |
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refactoring getfile
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parents:
191
diff
changeset
|
1269 |
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1270 |
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|
1271 |
1354 | 1272 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1273 ResourceType resourceType) |
0 | 1274 { |
1357 | 1275 boost::mutex::scoped_lock lock(mutex_); |
1276 db_.GetAllPublicIds(target, resourceType); | |
0 | 1277 } |
1278 | |
1279 | |
1509
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|
1280 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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|
1281 ResourceType resourceType, |
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|
1282 size_t since, |
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|
1283 size_t limit) |
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|
1284 { |
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1285 if (limit == 0) |
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1286 { |
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1287 target.clear(); |
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1288 return; |
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1289 } |
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1290 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1291 boost::mutex::scoped_lock lock(mutex_); |
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1292 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1293 } |
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1294 |
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|
1295 |
1244 | 1296 template <typename T> |
1297 static void FormatLog(Json::Value& target, | |
1298 const std::list<T>& log, | |
1299 const std::string& name, | |
1300 bool done, | |
1301 int64_t since) | |
1240 | 1302 { |
1303 Json::Value items = Json::arrayValue; | |
1244 | 1304 for (typename std::list<T>::const_iterator |
1304 | 1305 it = log.begin(); it != log.end(); ++it) |
1240 | 1306 { |
1307 Json::Value item; | |
1308 it->Format(item); | |
1309 items.append(item); | |
1310 } | |
1311 | |
1312 target = Json::objectValue; | |
1244 | 1313 target[name] = items; |
1240 | 1314 target["Done"] = done; |
1315 | |
1305 | 1316 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1317 target["Last"] = static_cast<int>(last); |
1318 } | |
1319 | |
1320 | |
1247 | 1321 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1322 int64_t since, |
0 | 1323 unsigned int maxResults) |
1324 { | |
1240 | 1325 std::list<ServerIndexChange> changes; |
1326 bool done; | |
1327 | |
1328 { | |
1329 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1330 |
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1331 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1332 // "GetLastChange()" involves calls to "GetPublicId()" |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1333 Transaction transaction(*this); |
1247 | 1334 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1335 transaction.Commit(0); |
1240 | 1336 } |
1337 | |
1244 | 1338 FormatLog(target, changes, "Changes", done, since); |
237
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1339 } |
0 | 1340 |
1240 | 1341 |
1247 | 1342 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1343 { |
1240 | 1344 std::list<ServerIndexChange> changes; |
1345 | |
1346 { | |
1347 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1348 |
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1349 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1350 // "GetLastChange()" involves calls to "GetPublicId()" |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1351 Transaction transaction(*this); |
1247 | 1352 db_.GetLastChange(changes); |
2717
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|
1353 transaction.Commit(0); |
1240 | 1354 } |
1355 | |
1244 | 1356 FormatLog(target, changes, "Changes", true, 0); |
0 | 1357 } |
231 | 1358 |
1240 | 1359 |
231 | 1360 void ServerIndex::LogExportedResource(const std::string& publicId, |
1361 const std::string& remoteModality) | |
1362 { | |
1363 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1364 Transaction transaction(*this); |
231 | 1365 |
1366 int64_t id; | |
1367 ResourceType type; | |
1294 | 1368 if (!db_.LookupResource(id, type, publicId)) |
231 | 1369 { |
2573
3372c5255333
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1370 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1371 } |
1372 | |
1373 std::string patientId; | |
1374 std::string studyInstanceUid; | |
1375 std::string seriesInstanceUid; | |
1376 std::string sopInstanceUid; | |
1377 | |
1378 int64_t currentId = id; | |
1379 ResourceType currentType = type; | |
1380 | |
1381 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1382 bool done = false; | |
1383 while (!done) | |
1384 { | |
1385 DicomMap map; | |
1247 | 1386 db_.GetMainDicomTags(map, currentId); |
231 | 1387 |
1388 switch (currentType) | |
1389 { | |
269
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1390 case ResourceType_Patient: |
2090
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1391 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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|
1392 { |
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|
1393 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1394 } |
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1395 done = true; |
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|
1396 break; |
231 | 1397 |
269
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1398 case ResourceType_Study: |
2090
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diff
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|
1399 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1400 { |
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improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1401 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1402 } |
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1403 currentType = ResourceType_Patient; |
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|
1404 break; |
231 | 1405 |
269
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|
1406 case ResourceType_Series: |
2090
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1407 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1408 { |
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improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1409 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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|
1410 } |
269
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|
1411 currentType = ResourceType_Study; |
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diff
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|
1412 break; |
231 | 1413 |
269
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|
1414 case ResourceType_Instance: |
2090
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diff
changeset
|
1415 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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diff
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|
1416 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1417 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1418 } |
269
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|
1419 currentType = ResourceType_Series; |
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|
1420 break; |
231 | 1421 |
269
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diff
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|
1422 default: |
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|
1423 throw OrthancException(ErrorCode_InternalError); |
231 | 1424 } |
1425 | |
1426 // If we have not reached the Patient level, find the parent of | |
1427 // the current resource | |
1428 if (!done) | |
1429 { | |
1247 | 1430 bool ok = db_.LookupParent(currentId, currentId); |
375
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major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
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315
diff
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|
1431 assert(ok); |
231 | 1432 } |
1433 } | |
1434 | |
1246 | 1435 ExportedResource resource(-1, |
1436 type, | |
1437 publicId, | |
1438 remoteModality, | |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1439 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1440 patientId, |
1441 studyInstanceUid, | |
1442 seriesInstanceUid, | |
1443 sopInstanceUid); | |
1310
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custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1444 |
1247 | 1445 db_.LogExportedResource(resource); |
1310
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diff
changeset
|
1446 transaction.Commit(0); |
231 | 1447 } |
1448 | |
1449 | |
1247 | 1450 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1451 int64_t since, |
1452 unsigned int maxResults) | |
1453 { | |
1244 | 1454 std::list<ExportedResource> exported; |
1455 bool done; | |
1456 | |
1457 { | |
1458 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1459 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1460 } |
1461 | |
1462 FormatLog(target, exported, "Exports", done, since); | |
231 | 1463 } |
237
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|
1464 |
1244 | 1465 |
1247 | 1466 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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|
1467 { |
1244 | 1468 std::list<ExportedResource> exported; |
1469 | |
1470 { | |
1471 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1472 db_.GetLastExportedResource(exported); |
1244 | 1473 } |
1474 | |
1475 FormatLog(target, exported, "Exports", true, 0); | |
237
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1476 } |
268
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1477 |
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|
1478 |
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|
1479 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1480 { |
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1481 if (maximumStorageSize_ != 0) |
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1482 { |
3020
d207f6ac1f86
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diff
changeset
|
1483 assert(maximumStorageSize_ >= instanceSize); |
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1484 |
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|
1485 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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|
1486 { |
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1487 return true; |
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1488 } |
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1489 } |
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1490 |
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1491 if (maximumPatients_ != 0) |
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1492 { |
1247 | 1493 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1494 if (patientCount > maximumPatients_) |
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1495 { |
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1496 return true; |
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1497 } |
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1498 } |
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1499 |
268
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|
1500 return false; |
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1501 } |
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1502 |
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1503 |
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1504 void ServerIndex::Recycle(uint64_t instanceSize, |
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1505 const std::string& newPatientId) |
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1506 { |
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1507 if (!IsRecyclingNeeded(instanceSize)) |
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1508 { |
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1509 return; |
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1510 } |
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1511 |
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1512 // Check whether other DICOM instances from this patient are |
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1513 // already stored |
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1514 int64_t patientToAvoid; |
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1515 ResourceType type; |
1294 | 1516 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1517 |
269
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1518 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1519 { |
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1520 throw OrthancException(ErrorCode_InternalError); |
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1521 } |
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1522 |
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1523 // Iteratively select patient to remove until there is enough |
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1524 // space in the DICOM store |
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1525 int64_t patientToRecycle; |
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1526 while (true) |
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1527 { |
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1528 // If other instances of this patient are already in the store, |
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1529 // we must avoid to recycle them |
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1530 bool ok = hasPatientToAvoid ? |
1247 | 1531 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1532 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1533 |
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1534 if (!ok) |
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1535 { |
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1536 throw OrthancException(ErrorCode_FullStorage); |
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1537 } |
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1538 |
1331
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1539 VLOG(1) << "Recycling one patient"; |
1247 | 1540 db_.DeleteResource(patientToRecycle); |
269
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1541 |
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1542 if (!IsRecyclingNeeded(instanceSize)) |
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1543 { |
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1544 // OK, we're done |
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1545 break; |
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1546 } |
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1547 } |
268
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1548 } |
269
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1549 |
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1550 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1551 { |
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1552 boost::mutex::scoped_lock lock(mutex_); |
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1553 maximumPatients_ = count; |
270
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1554 |
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1555 if (count == 0) |
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1556 { |
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1557 LOG(WARNING) << "No limit on the number of stored patients"; |
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1558 } |
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1559 else |
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|
1560 { |
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1561 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1562 } |
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|
1563 |
269
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|
1564 StandaloneRecycling(); |
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1565 } |
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1566 |
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1567 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1568 { |
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1569 boost::mutex::scoped_lock lock(mutex_); |
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|
1570 maximumStorageSize_ = size; |
270
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|
1571 |
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1572 if (size == 0) |
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|
1573 { |
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1574 LOG(WARNING) << "No limit on the size of the storage area"; |
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1575 } |
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|
1576 else |
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|
1577 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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diff
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|
1578 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1579 } |
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|
1580 |
269
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|
1581 StandaloneRecycling(); |
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1582 } |
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1583 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1584 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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diff
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|
1585 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
changeset
|
1586 boost::mutex::scoped_lock lock(mutex_); |
8aa6aef11b70
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diff
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|
1587 overwrite_ = overwrite; |
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diff
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|
1588 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1589 |
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|
1590 |
272
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|
1591 void ServerIndex::StandaloneRecycling() |
269
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1592 { |
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1593 // WARNING: No mutex here, do not include this as a public method |
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1594 Transaction t(*this); |
269
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1595 Recycle(0, ""); |
278
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|
1596 t.Commit(0); |
269
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1597 } |
272
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|
1598 |
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1599 |
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1600 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1601 { |
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1602 boost::mutex::scoped_lock lock(mutex_); |
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1603 |
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1604 // Lookup for the requested resource |
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1605 int64_t id; |
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1606 ResourceType type; |
1294 | 1607 if (!db_.LookupResource(id, type, publicId) || |
272
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1608 type != ResourceType_Patient) |
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1609 { |
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1610 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1611 } |
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1612 |
1247 | 1613 return db_.IsProtectedPatient(id); |
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1614 } |
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1615 |
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1616 |
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1617 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1618 bool isProtected) |
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1619 { |
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1620 boost::mutex::scoped_lock lock(mutex_); |
1310
61ce8147f30d
custom database back-end
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|
1621 Transaction transaction(*this); |
272
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1622 |
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1623 // Lookup for the requested resource |
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1624 int64_t id; |
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1625 ResourceType type; |
1294 | 1626 if (!db_.LookupResource(id, type, publicId) || |
272
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1627 type != ResourceType_Patient) |
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1628 { |
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1629 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1630 } |
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1631 |
1247 | 1632 db_.SetProtectedPatient(id, isProtected); |
1310
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1633 transaction.Commit(0); |
272
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1634 |
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1635 if (isProtected) |
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1636 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1637 else |
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1638 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1639 } |
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1640 |
304 | 1641 |
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1642 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1643 const std::string& publicId) |
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1644 { |
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1645 result.clear(); |
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1646 |
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1647 boost::mutex::scoped_lock lock(mutex_); |
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1648 |
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1649 ResourceType type; |
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1650 int64_t resource; |
1294 | 1651 if (!db_.LookupResource(resource, type, publicId)) |
714
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1652 { |
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|
1653 throw OrthancException(ErrorCode_UnknownResource); |
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1654 } |
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1655 |
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1656 if (type == ResourceType_Instance) |
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1657 { |
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|
1658 // An instance cannot have a child |
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1659 throw OrthancException(ErrorCode_BadParameterType); |
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1660 } |
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1661 |
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|
1662 std::list<int64_t> tmp; |
1247 | 1663 db_.GetChildrenInternalId(tmp, resource); |
714
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1664 |
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1665 for (std::list<int64_t>::const_iterator |
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1666 it = tmp.begin(); it != tmp.end(); ++it) |
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1667 { |
1247 | 1668 result.push_back(db_.GetPublicId(*it)); |
714
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1669 } |
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1670 } |
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1671 |
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1672 |
304 | 1673 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1674 const std::string& publicId) | |
1675 { | |
1676 result.clear(); | |
1677 | |
1678 boost::mutex::scoped_lock lock(mutex_); | |
1679 | |
1680 ResourceType type; | |
1681 int64_t top; | |
1294 | 1682 if (!db_.LookupResource(top, type, publicId)) |
304 | 1683 { |
1684 throw OrthancException(ErrorCode_UnknownResource); | |
1685 } | |
1686 | |
1687 if (type == ResourceType_Instance) | |
1688 { | |
1689 // The resource is already an instance: Do not go down the hierarchy | |
1690 result.push_back(publicId); | |
1691 return; | |
1692 } | |
1693 | |
1694 std::stack<int64_t> toExplore; | |
1695 toExplore.push(top); | |
1696 | |
1697 std::list<int64_t> tmp; | |
1698 | |
1699 while (!toExplore.empty()) | |
1700 { | |
1701 // Get the internal ID of the current resource | |
1702 int64_t resource = toExplore.top(); | |
1703 toExplore.pop(); | |
1704 | |
1247 | 1705 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1706 { |
1247 | 1707 result.push_back(db_.GetPublicId(resource)); |
304 | 1708 } |
1709 else | |
1710 { | |
1711 // Tag all the children of this resource as to be explored | |
1247 | 1712 db_.GetChildrenInternalId(tmp, resource); |
304 | 1713 for (std::list<int64_t>::const_iterator |
656 | 1714 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1715 { |
1716 toExplore.push(*it); | |
1717 } | |
1718 } | |
1719 } | |
1720 } | |
1721 | |
306
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1722 |
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1723 void ServerIndex::SetMetadata(const std::string& publicId, |
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1724 MetadataType type, |
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1725 const std::string& value) |
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1726 { |
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1727 boost::mutex::scoped_lock lock(mutex_); |
1773
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1728 Transaction t(*this); |
306
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1729 |
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1730 ResourceType rtype; |
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1731 int64_t id; |
1294 | 1732 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1733 { |
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1734 throw OrthancException(ErrorCode_UnknownResource); |
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1735 } |
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1736 |
1247 | 1737 db_.SetMetadata(id, type, value); |
1773
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1738 |
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1739 if (IsUserMetadata(type)) |
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1740 { |
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1741 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1742 } |
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1743 |
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1744 t.Commit(0); |
306
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1745 } |
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1746 |
438 | 1747 |
1748 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1749 MetadataType type) | |
1750 { | |
1751 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1752 Transaction t(*this); |
438 | 1753 |
1754 ResourceType rtype; | |
1755 int64_t id; | |
1294 | 1756 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1757 { |
1758 throw OrthancException(ErrorCode_UnknownResource); | |
1759 } | |
1760 | |
1247 | 1761 db_.DeleteMetadata(id, type); |
1773
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1762 |
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1763 if (IsUserMetadata(type)) |
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1764 { |
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1765 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1766 } |
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1767 |
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1768 t.Commit(0); |
438 | 1769 } |
1770 | |
1771 | |
306
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1772 bool ServerIndex::LookupMetadata(std::string& target, |
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1773 const std::string& publicId, |
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1774 MetadataType type) |
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1775 { |
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1776 boost::mutex::scoped_lock lock(mutex_); |
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1777 |
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1778 ResourceType rtype; |
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1779 int64_t id; |
1294 | 1780 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1781 { |
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1782 throw OrthancException(ErrorCode_UnknownResource); |
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1783 } |
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1784 |
1247 | 1785 return db_.LookupMetadata(target, id, type); |
306
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1786 } |
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1787 |
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1788 |
739 | 1789 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1790 const std::string& publicId) |
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1791 { |
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1792 boost::mutex::scoped_lock lock(mutex_); |
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1793 |
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1794 ResourceType rtype; |
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1795 int64_t id; |
1294 | 1796 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1797 { |
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1798 throw OrthancException(ErrorCode_UnknownResource); |
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1799 } |
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1800 |
1247 | 1801 db_.ListAvailableMetadata(target, id); |
436
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1802 } |
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1803 |
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1804 |
697
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1805 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1806 const std::string& publicId, |
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1807 ResourceType expectedType) |
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1808 { |
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|
1809 boost::mutex::scoped_lock lock(mutex_); |
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1810 |
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|
1811 ResourceType type; |
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1812 int64_t id; |
1294 | 1813 if (!db_.LookupResource(id, type, publicId) || |
697
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1814 expectedType != type) |
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1815 { |
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1816 throw OrthancException(ErrorCode_UnknownResource); |
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1817 } |
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1818 |
1247 | 1819 db_.ListAvailableAttachments(target, id); |
697
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1820 } |
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1821 |
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1822 |
306
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1823 bool ServerIndex::LookupParent(std::string& target, |
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1824 const std::string& publicId) |
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1825 { |
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1826 boost::mutex::scoped_lock lock(mutex_); |
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1827 |
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1828 ResourceType type; |
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1829 int64_t id; |
1294 | 1830 if (!db_.LookupResource(id, type, publicId)) |
306
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1831 { |
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1832 throw OrthancException(ErrorCode_UnknownResource); |
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1833 } |
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1834 |
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1835 int64_t parentId; |
1247 | 1836 if (db_.LookupParent(parentId, id)) |
306
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1837 { |
1247 | 1838 target = db_.GetPublicId(parentId); |
306
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1839 return true; |
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1840 } |
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1841 else |
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1842 { |
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1843 return false; |
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1844 } |
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1845 } |
310 | 1846 |
1847 | |
1848 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1849 { | |
1850 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1851 Transaction transaction(*this); |
311 | 1852 |
1237 | 1853 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1854 transaction.Commit(0); |
311 | 1855 |
1856 return seq; | |
310 | 1857 } |
315 | 1858 |
1859 | |
1860 | |
1861 void ServerIndex::LogChange(ChangeType changeType, | |
1862 const std::string& publicId) | |
1863 { | |
1864 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1865 Transaction transaction(*this); |
315 | 1866 |
1867 int64_t id; | |
1868 ResourceType type; | |
1294 | 1869 if (!db_.LookupResource(id, type, publicId)) |
315 | 1870 { |
1871 throw OrthancException(ErrorCode_UnknownResource); | |
1872 } | |
1873 | |
1237 | 1874 LogChange(id, changeType, type, publicId); |
1310
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1875 transaction.Commit(0); |
315 | 1876 } |
413
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1877 |
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1878 |
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1879 void ServerIndex::DeleteChanges() |
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1880 { |
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1881 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1882 db_.ClearChanges(); |
413
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1883 } |
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1884 |
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1885 void ServerIndex::DeleteExportedResources() |
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1886 { |
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1887 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1888 db_.ClearExportedResources(); |
413
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1889 } |
440
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1890 |
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1891 |
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1892 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1893 /* out */ uint64_t& uncompressedSize, |
1894 /* out */ unsigned int& countStudies, | |
1895 /* out */ unsigned int& countSeries, | |
1896 /* out */ unsigned int& countInstances, | |
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1897 /* out */ uint64_t& dicomDiskSize, |
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1898 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1899 /* in */ int64_t id, |
1900 /* in */ ResourceType type) | |
440
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1901 { |
646 | 1902 std::stack<int64_t> toExplore; |
1903 toExplore.push(id); | |
440
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1904 |
646 | 1905 countInstances = 0; |
1906 countSeries = 0; | |
1907 countStudies = 0; | |
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1908 diskSize = 0; |
646 | 1909 uncompressedSize = 0; |
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1910 dicomDiskSize = 0; |
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1911 dicomUncompressedSize = 0; |
440
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1912 |
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1913 while (!toExplore.empty()) |
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1914 { |
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1915 // Get the internal ID of the current resource |
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1916 int64_t resource = toExplore.top(); |
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1917 toExplore.pop(); |
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1918 |
1247 | 1919 ResourceType thisType = db_.GetResourceType(resource); |
440
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1920 |
702
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1921 std::list<FileContentType> f; |
1247 | 1922 db_.ListAvailableAttachments(f, resource); |
702
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1923 |
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1924 for (std::list<FileContentType>::const_iterator |
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1925 it = f.begin(); it != f.end(); ++it) |
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1926 { |
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1927 FileInfo attachment; |
1247 | 1928 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1929 { |
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1930 if (attachment.GetContentType() == FileContentType_Dicom) |
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1931 { |
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1932 dicomDiskSize += attachment.GetCompressedSize(); |
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1933 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1934 } |
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1935 |
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|
1936 diskSize += attachment.GetCompressedSize(); |
702
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1937 uncompressedSize += attachment.GetUncompressedSize(); |
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1938 } |
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1939 } |
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|
1940 |
440
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1941 if (thisType == ResourceType_Instance) |
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1942 { |
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1943 countInstances++; |
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1944 } |
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|
1945 else |
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|
1946 { |
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|
1947 switch (thisType) |
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1948 { |
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|
1949 case ResourceType_Study: |
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1950 countStudies++; |
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1951 break; |
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1952 |
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1953 case ResourceType_Series: |
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1954 countSeries++; |
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1955 break; |
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diff
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|
1956 |
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1957 default: |
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1958 break; |
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diff
changeset
|
1959 } |
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diff
changeset
|
1960 |
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changeset
|
1961 // Tag all the children of this resource as to be explored |
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|
1962 std::list<int64_t> tmp; |
1247 | 1963 db_.GetChildrenInternalId(tmp, resource); |
440
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changeset
|
1964 for (std::list<int64_t>::const_iterator |
656 | 1965 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
changeset
|
1966 { |
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diff
changeset
|
1967 toExplore.push(*it); |
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1968 } |
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1969 } |
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1970 } |
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1971 |
646 | 1972 if (countStudies == 0) |
1973 { | |
1974 countStudies = 1; | |
1975 } | |
1976 | |
1977 if (countSeries == 0) | |
1978 { | |
1979 countSeries = 1; | |
1980 } | |
1981 } | |
1982 | |
1983 | |
1984 | |
1985 void ServerIndex::GetStatistics(Json::Value& target, | |
1986 const std::string& publicId) | |
1987 { | |
1988 boost::mutex::scoped_lock lock(mutex_); | |
1989 | |
1990 ResourceType type; | |
1991 int64_t top; | |
1294 | 1992 if (!db_.LookupResource(top, type, publicId)) |
646 | 1993 { |
1994 throw OrthancException(ErrorCode_UnknownResource); | |
1995 } | |
1996 | |
1997 uint64_t uncompressedSize; | |
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1998 uint64_t diskSize; |
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1999 uint64_t dicomUncompressedSize; |
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2000 uint64_t dicomDiskSize; |
646 | 2001 unsigned int countStudies; |
2002 unsigned int countSeries; | |
2003 unsigned int countInstances; | |
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2004 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2005 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 2006 |
440
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2007 target = Json::objectValue; |
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2008 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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2009 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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2010 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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2011 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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2012 |
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2013 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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2014 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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2015 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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2016 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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2017 |
440
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2018 switch (type) |
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2019 { |
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2020 // Do NOT add "break" below this point! |
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2021 case ResourceType_Patient: |
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2022 target["CountStudies"] = countStudies; |
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2023 |
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2024 case ResourceType_Study: |
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2025 target["CountSeries"] = countSeries; |
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2026 |
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2027 case ResourceType_Series: |
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2028 target["CountInstances"] = countInstances; |
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2029 |
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2030 case ResourceType_Instance: |
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2031 default: |
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2032 break; |
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2033 } |
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2034 } |
511
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2035 |
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2036 |
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|
2037 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 2038 /* out */ uint64_t& uncompressedSize, |
2039 /* out */ unsigned int& countStudies, | |
2040 /* out */ unsigned int& countSeries, | |
2041 /* out */ unsigned int& countInstances, | |
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2042 /* out */ uint64_t& dicomDiskSize, |
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|
2043 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2044 const std::string& publicId) |
2045 { | |
2046 boost::mutex::scoped_lock lock(mutex_); | |
2047 | |
2048 ResourceType type; | |
2049 int64_t top; | |
1294 | 2050 if (!db_.LookupResource(top, type, publicId)) |
646 | 2051 { |
2052 throw OrthancException(ErrorCode_UnknownResource); | |
2053 } | |
2054 | |
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2055 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2056 countSeries, countInstances, dicomDiskSize, |
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2057 dicomUncompressedSize, top, type); |
646 | 2058 } |
2059 | |
2060 | |
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|
2061 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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2062 unsigned int threadSleep) |
511
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2063 { |
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2064 int stableAge; |
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2065 |
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2066 { |
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2067 OrthancConfiguration::ReaderLock lock; |
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2068 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2069 } |
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2070 |
511
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2071 if (stableAge <= 0) |
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2072 { |
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2073 stableAge = 60; |
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2074 } |
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2075 |
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2076 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2077 |
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2078 while (!that->done_) |
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2079 { |
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2080 // Check for stable resources each few seconds |
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2081 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2082 |
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2083 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2084 |
511
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2085 while (!that->unstableResources_.IsEmpty() && |
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2086 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2087 { |
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2088 // This DICOM resource has not received any new instance for |
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2089 // some time. It can be considered as stable. |
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2090 |
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2091 UnstableResourcePayload payload; |
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2092 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2093 |
513 | 2094 // Ensure that the resource is still existing before logging the change |
1247 | 2095 if (that->db_.IsExistingResource(id)) |
511
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2096 { |
1177
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2097 switch (payload.GetResourceType()) |
513 | 2098 { |
1177
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2099 case ResourceType_Patient: |
1237 | 2100 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2101 break; |
511
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2102 |
1177
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2103 case ResourceType_Study: |
1237 | 2104 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2105 break; |
511
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2106 |
1177
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2107 case ResourceType_Series: |
1237 | 2108 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2109 break; |
2110 | |
2111 default: | |
2112 throw OrthancException(ErrorCode_InternalError); | |
2113 } | |
2114 | |
2115 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2116 } |
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2117 } |
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2118 } |
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2119 |
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2120 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2121 } |
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2122 |
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2123 |
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2124 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2125 Orthanc::ResourceType type, |
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2126 const std::string& publicId) |
511
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2127 { |
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|
2128 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
2129 |
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|
2130 assert(type == Orthanc::ResourceType_Patient || |
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|
2131 type == Orthanc::ResourceType_Study || |
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|
2132 type == Orthanc::ResourceType_Series); |
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2133 |
1177
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Plugins can monitor changes through callbacks
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diff
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|
2134 UnstableResourcePayload payload(type, publicId); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
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|
2135 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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diff
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|
2136 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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NewChildInstance change type
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diff
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|
2137 |
1237 | 2138 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2139 } |
521 | 2140 |
2141 | |
2142 | |
3034
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diff
changeset
|
2143 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2144 ResourceType level, |
4941494b5dd8
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diff
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|
2145 const DicomTag& tag, |
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rename LookupIdentifier as LookupIdentifierExact
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diff
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|
2146 const std::string& value) |
615 | 2147 { |
1727 | 2148 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2149 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2150 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2151 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2152 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2153 |
615 | 2154 result.clear(); |
2155 | |
3034
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diff
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|
2156 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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diff
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|
2157 |
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moving LookupResource to graveyard
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diff
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|
2158 std::vector<DatabaseConstraint> query; |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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3061
diff
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|
2159 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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moving LookupResource to graveyard
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diff
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|
2160 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2161 std::list<std::string> tmp; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
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|
2162 |
3034
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diff
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|
2163 { |
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diff
changeset
|
2164 boost::mutex::scoped_lock lock(mutex_); |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
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|
2165 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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diff
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|
2166 } |
3075
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|
2167 |
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diff
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|
2168 CopyListToVector(result, tmp); |
615 | 2169 } |
2170 | |
2171 | |
699
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|
2172 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
2173 const std::string& publicId) |
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|
2174 { |
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diff
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|
2175 boost::mutex::scoped_lock lock(mutex_); |
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|
2176 |
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diff
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|
2177 Transaction t(*this); |
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|
2178 |
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diff
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|
2179 ResourceType resourceType; |
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diff
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|
2180 int64_t resourceId; |
1294 | 2181 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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diff
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|
2182 { |
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diff
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|
2183 return StoreStatus_Failure; // Inexistent resource |
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diff
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|
2184 } |
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diff
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|
2185 |
704
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diff
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|
2186 // Remove possible previous attachment |
1247 | 2187 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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diff
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|
2188 |
704
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diff
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|
2189 // Locate the patient of the target resource |
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diff
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|
2190 int64_t patientId = resourceId; |
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diff
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|
2191 for (;;) |
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diff
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|
2192 { |
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diff
changeset
|
2193 int64_t parent; |
1247 | 2194 if (db_.LookupParent(parent, patientId)) |
704
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|
2195 { |
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diff
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|
2196 // We have not reached the patient level yet |
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diff
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|
2197 patientId = parent; |
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|
2198 } |
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diff
changeset
|
2199 else |
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diff
changeset
|
2200 { |
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diff
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|
2201 // We have reached the patient level |
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|
2202 break; |
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|
2203 } |
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|
2204 } |
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|
2205 |
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diff
changeset
|
2206 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2207 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2208 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2209 |
1247 | 2210 db_.AddAttachment(resourceId, attachment); |
699
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|
2211 |
1773
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|
2212 if (IsUserContentType(attachment.GetContentType())) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2213 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2214 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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|
2215 } |
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|
2216 |
699
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diff
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|
2217 t.Commit(attachment.GetCompressedSize()); |
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|
2218 |
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|
2219 return StoreStatus_Success; |
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|
2220 } |
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2221 |
702
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|
2222 |
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|
2223 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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|
2224 FileContentType type) |
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|
2225 { |
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|
2226 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2227 Transaction t(*this); |
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|
2228 |
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|
2229 ResourceType rtype; |
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|
2230 int64_t id; |
1294 | 2231 if (!db_.LookupResource(id, rtype, publicId)) |
702
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2232 { |
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2233 throw OrthancException(ErrorCode_UnknownResource); |
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2234 } |
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2235 |
1247 | 2236 db_.DeleteAttachment(id, type); |
702
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2237 |
1773
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2238 if (IsUserContentType(type)) |
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2239 { |
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|
2240 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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2241 } |
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2242 |
702
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|
2243 t.Commit(0); |
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2244 } |
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2245 |
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2246 |
1002
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|
2247 bool ServerIndex::GetMetadata(Json::Value& target, |
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2248 const std::string& publicId) |
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2249 { |
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|
2250 boost::mutex::scoped_lock lock(mutex_); |
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|
2251 |
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|
2252 target = Json::objectValue; |
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2253 |
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|
2254 ResourceType type; |
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changeset
|
2255 int64_t id; |
1294 | 2256 if (!db_.LookupResource(id, type, publicId)) |
1002
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|
2257 { |
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|
2258 return false; |
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2259 } |
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|
2260 |
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changeset
|
2261 std::list<MetadataType> metadata; |
1247 | 2262 db_.ListAvailableMetadata(metadata, id); |
1002
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|
2263 |
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|
2264 for (std::list<MetadataType>::const_iterator |
1304 | 2265 it = metadata.begin(); it != metadata.end(); ++it) |
1002
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|
2266 { |
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diff
changeset
|
2267 std::string key = EnumerationToString(*it); |
1238 | 2268 |
2269 std::string value; | |
1247 | 2270 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2271 { |
2272 value.clear(); | |
2273 } | |
2274 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2275 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2276 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2277 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2278 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2279 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2280 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2281 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2282 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2283 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2284 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2285 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2286 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2287 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2288 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2289 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2290 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2291 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2292 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2293 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2294 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2295 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2296 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2297 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2298 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2299 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2300 { |
1239 | 2301 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2302 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2303 if (LookupGlobalProperty(value, property)) |
1239 | 2304 { |
2305 return value; | |
2306 } | |
2307 else | |
2308 { | |
2309 return defaultValue; | |
2310 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2311 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2312 |
1352 | 2313 |
2314 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2315 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2317 ResourceType levelOfInterest) |
1352 | 2318 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2323 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2324 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2325 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2326 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2327 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2328 |
1352 | 2329 result.Clear(); |
2330 | |
2331 boost::mutex::scoped_lock lock(mutex_); | |
2332 | |
2333 // Lookup for the requested resource | |
2334 int64_t id; | |
2335 ResourceType type; | |
2336 if (!db_.LookupResource(id, type, publicId) || | |
2337 type != expectedType) | |
2338 { | |
2339 return false; | |
2340 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2341 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2342 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2343 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2344 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2345 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2346 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2347 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2348 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2349 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2350 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2351 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2352 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2353 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2354 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2355 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2356 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2357 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2358 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2359 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2360 } |
1352 | 2361 else |
2362 { | |
2363 db_.GetMainDicomTags(result, id); | |
2364 return true; | |
2365 } | |
2366 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2367 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2368 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2369 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2403 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2404 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2405 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2406 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2407 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2408 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2409 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2410 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2411 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2412 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2413 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2414 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2415 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2416 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2417 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2418 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2419 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2420 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2421 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2422 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2423 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2424 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2425 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2426 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2427 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2428 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2429 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2430 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2431 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2432 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2433 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2434 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2435 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2436 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2437 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2438 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2439 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2440 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2441 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2442 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2443 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2444 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2445 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2446 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2447 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2448 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2449 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2450 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2451 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2452 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2453 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2454 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2455 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2456 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2457 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2458 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2459 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2460 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2461 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2462 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2466 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2467 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2482 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2483 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2484 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2485 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2486 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2487 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2518 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2519 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2520 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2521 db_.ClearMainDicomTags(instance); |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2522 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
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|
2523 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2524 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2525 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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3082
diff
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|
2526 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
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|
2527 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
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|
2528 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
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|
2529 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2530 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2531 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2532 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2533 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2534 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2535 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2536 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2537 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2538 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2539 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2540 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2541 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2542 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2543 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2544 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2545 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2546 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2547 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2548 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2549 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2550 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2551 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2552 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2553 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2554 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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3020
diff
changeset
|
2555 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2556 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2557 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2558 const DatabaseLookup& source, |
2559 ResourceType queryLevel) const | |
2560 { | |
2561 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2562 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2563 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2564 target.reserve(source.GetConstraintsCount()); |
3031 | 2565 |
3027 | 2566 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2567 { | |
3031 | 2568 ResourceType level; |
2569 DicomTagType type; | |
3027 | 2570 |
3031 | 2571 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2572 | |
2573 if (type == DicomTagType_Identifier || | |
2574 type == DicomTagType_Main) | |
3027 | 2575 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2576 // Use the fact that patient-level tags are copied at the study level |
3031 | 2577 if (level == ResourceType_Patient && |
2578 queryLevel != ResourceType_Patient) | |
3027 | 2579 { |
3031 | 2580 level = ResourceType_Study; |
3027 | 2581 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2582 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2583 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2584 } |
2585 } | |
2586 } | |
2587 | |
2588 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2589 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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3034
diff
changeset
|
2590 std::vector<std::string>* instancesId, |
3025
039a9d262d64
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Sebastien Jodogne <s.jodogne@gmail.com>
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2591 const DatabaseLookup& lookup, |
039a9d262d64
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|
2592 ResourceType queryLevel, |
039a9d262d64
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|
2593 size_t limit) |
039a9d262d64
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2594 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2595 std::vector<DatabaseConstraint> normalized; |
3027 | 2596 NormalizeLookup(normalized, lookup, queryLevel); |
2597 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2598 std::list<std::string> resourcesList, instancesList; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2599 |
3027 | 2600 { |
2601 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2602 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2603 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2604 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
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|
2605 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2606 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2607 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2608 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2609 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2610 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2611 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2612 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2613 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2614 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2615 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2616 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2617 CopyListToVector(*instancesId, instancesList); |
3027 | 2618 } |
3025
039a9d262d64
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3020
diff
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|
2619 } |
0 | 2620 } |