Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4678:2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 04 Jun 2021 17:38:43 +0200 |
parents | 521e39b3f2c0 |
children | 898e8ac8c453 |
rev | line source |
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4297 | 1 /** |
786 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
23 #pragma once | |
24 | |
790 | 25 #include "ParsedDicomFile.h" |
786 | 26 |
27 namespace Orthanc | |
28 { | |
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29 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable |
786 | 30 { |
31 /** | |
32 * Process: | |
33 * (1) Remove private tags | |
34 * (2) Remove tags specified by the user | |
35 * (3) Replace tags | |
36 **/ | |
37 | |
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38 public: |
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39 enum TagOperation |
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40 { |
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41 TagOperation_Keep, |
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42 TagOperation_Remove |
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43 }; |
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44 |
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DicomModification::SetDicomIdentifierGenerator()
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45 class IDicomIdentifierGenerator : public boost::noncopyable |
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DicomModification::SetDicomIdentifierGenerator()
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46 { |
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DicomModification::SetDicomIdentifierGenerator()
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47 public: |
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DicomModification::SetDicomIdentifierGenerator()
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48 virtual ~IDicomIdentifierGenerator() |
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DicomModification::SetDicomIdentifierGenerator()
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49 { |
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DicomModification::SetDicomIdentifierGenerator()
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50 } |
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DicomModification::SetDicomIdentifierGenerator()
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51 |
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DicomModification::SetDicomIdentifierGenerator()
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52 virtual bool Apply(std::string& target, |
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53 const std::string& sourceIdentifier, |
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54 ResourceType level, |
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55 const DicomMap& sourceDicom) = 0; |
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56 }; |
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DicomModification::SetDicomIdentifierGenerator()
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57 |
786 | 58 private: |
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59 class RelationshipsVisitor; |
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60 |
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61 class DicomTagRange |
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62 { |
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63 private: |
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64 uint16_t groupFrom_; |
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65 uint16_t groupTo_; |
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66 uint16_t elementFrom_; |
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67 uint16_t elementTo_; |
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68 |
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69 public: |
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70 DicomTagRange(uint16_t groupFrom, |
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71 uint16_t groupTo, |
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72 uint16_t elementFrom, |
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73 uint16_t elementTo); |
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74 |
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75 uint16_t GetGroupFrom() const |
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76 { |
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77 return groupFrom_; |
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78 } |
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79 |
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80 uint16_t GetGroupTo() const |
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81 { |
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82 return groupTo_; |
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83 } |
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84 |
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85 uint16_t GetElementFrom() const |
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86 { |
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87 return elementFrom_; |
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88 } |
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89 |
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90 uint16_t GetElementTo() const |
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91 { |
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92 return elementTo_; |
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93 } |
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94 |
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95 bool Contains(const DicomTag& tag) const; |
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96 }; |
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97 |
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98 typedef std::set<DicomTag> SetOfTags; |
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99 typedef std::map<DicomTag, Json::Value*> Replacements; |
788 | 100 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
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101 typedef std::list<DicomTagRange> RemovedRanges; |
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103 SetOfTags removals_; |
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104 SetOfTags clearings_; |
786 | 105 Replacements replacements_; |
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106 SetOfTags uids_; // New in Orthanc 1.9.4 |
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107 RemovedRanges removedRanges_; // New in Orthanc 1.9.4 |
786 | 108 bool removePrivateTags_; |
788 | 109 ResourceType level_; |
786 | 110 UidMap uidMap_; |
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111 SetOfTags privateTagsToKeep_; |
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112 bool allowManualIdentifiers_; |
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113 bool keepStudyInstanceUid_; |
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114 bool keepSeriesInstanceUid_; |
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115 bool keepSopInstanceUid_; |
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116 bool updateReferencedRelationships_; |
2721 | 117 bool isAnonymization_; |
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118 DicomMap currentSource_; |
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119 std::string privateCreator_; |
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120 |
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121 IDicomIdentifierGenerator* identifierGenerator_; |
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123 std::string MapDicomIdentifier(const std::string& original, |
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124 ResourceType level); |
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125 |
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126 void RegisterMappedDicomIdentifier(const std::string& original, |
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127 const std::string& mapped, |
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128 ResourceType level); |
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129 |
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130 void MapDicomTags(ParsedDicomFile& dicom, |
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131 ResourceType level); |
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133 void MarkNotOrthancAnonymization(); |
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134 |
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135 void ClearReplacements(); |
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136 |
2323 | 137 bool CancelReplacement(const DicomTag& tag); |
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138 |
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139 void ReplaceInternal(const DicomTag& tag, |
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140 const Json::Value& value); |
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141 |
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142 void SetupUidsFromOrthanc_1_9_3(); |
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143 |
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144 void SetupAnonymization2008(); |
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145 |
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146 void SetupAnonymization2017c(); |
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147 |
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148 void SetupAnonymization2021b(); |
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149 |
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150 void UnserializeUidMap(ResourceType level, |
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151 const Json::Value& serialized, |
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152 const char* field); |
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153 |
786 | 154 public: |
155 DicomModification(); | |
156 | |
4200 | 157 explicit DicomModification(const Json::Value& serialized); |
2655 | 158 |
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159 ~DicomModification(); |
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160 |
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161 void Keep(const DicomTag& tag); |
786 | 162 |
163 void Remove(const DicomTag& tag); | |
164 | |
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165 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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166 void Clear(const DicomTag& tag); |
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167 |
786 | 168 bool IsRemoved(const DicomTag& tag) const; |
169 | |
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170 bool IsCleared(const DicomTag& tag) const; |
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171 |
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172 // "safeForAnonymization" tells Orthanc that this replacement does |
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173 // not break the anonymization process it implements (for internal use only) |
786 | 174 void Replace(const DicomTag& tag, |
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175 const Json::Value& value, // Encoded using UTF-8 |
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176 bool safeForAnonymization); |
786 | 177 |
178 bool IsReplaced(const DicomTag& tag) const; | |
179 | |
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180 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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181 |
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182 std::string GetReplacementAsString(const DicomTag& tag) const; |
786 | 183 |
184 void SetRemovePrivateTags(bool removed); | |
185 | |
4297 | 186 bool ArePrivateTagsRemoved() const; |
786 | 187 |
788 | 188 void SetLevel(ResourceType level); |
786 | 189 |
4297 | 190 ResourceType GetLevel() const; |
786 | 191 |
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192 void SetupAnonymization(DicomVersion version); |
786 | 193 |
194 void Apply(ParsedDicomFile& toModify); | |
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195 |
4297 | 196 void SetAllowManualIdentifiers(bool check); |
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197 |
4297 | 198 bool AreAllowManualIdentifiers() const; |
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199 |
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200 void ParseModifyRequest(const Json::Value& request); |
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201 |
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202 void ParseAnonymizationRequest(bool& patientNameReplaced, |
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203 const Json::Value& request); |
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204 |
4297 | 205 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator); |
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206 |
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207 void Serialize(Json::Value& value) const; |
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208 |
4297 | 209 void SetPrivateCreator(const std::string& privateCreator); |
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210 |
4297 | 211 const std::string& GetPrivateCreator() const; |
786 | 212 }; |
213 } |