Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomDirWriter.cpp @ 4202:2007ab69ac16
moving ORTHANC_FORCE_INLINE and ORTHANC_OVERRIDE from Enumerations.h to Compatibility.h
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 17 Sep 2020 08:35:11 +0200 |
parents | 7112a8af0b63 |
children | 4d42408da117 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Lesser General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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24 |
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25 |
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26 /*========================================================================= |
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27 |
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28 This file is based on portions of the following project: |
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29 |
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30 Program: DCMTK 3.6.0 |
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31 Module: http://dicom.offis.de/dcmtk.php.en |
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32 |
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33 Copyright (C) 1994-2011, OFFIS e.V. |
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34 All rights reserved. |
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35 |
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36 This software and supporting documentation were developed by |
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37 |
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38 OFFIS e.V. |
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39 R&D Division Health |
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40 Escherweg 2 |
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41 26121 Oldenburg, Germany |
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42 |
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43 Redistribution and use in source and binary forms, with or without |
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44 modification, are permitted provided that the following conditions |
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45 are met: |
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46 |
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47 - Redistributions of source code must retain the above copyright |
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48 notice, this list of conditions and the following disclaimer. |
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49 |
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50 - Redistributions in binary form must reproduce the above copyright |
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51 notice, this list of conditions and the following disclaimer in the |
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52 documentation and/or other materials provided with the distribution. |
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53 |
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54 - Neither the name of OFFIS nor the names of its contributors may be |
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55 used to endorse or promote products derived from this software |
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56 without specific prior written permission. |
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57 |
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58 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS |
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59 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT |
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60 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR |
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61 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT |
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62 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, |
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63 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT |
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64 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, |
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65 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY |
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66 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT |
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67 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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68 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
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69 |
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70 =========================================================================*/ |
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71 |
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74 /*** |
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75 |
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76 Validation: |
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78 # sudo apt-get install dicom3tools |
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79 # dciodvfy DICOMDIR 2>&1 | less |
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80 # dcentvfy DICOMDIR 2>&1 | less |
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81 |
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82 http://www.dclunie.com/dicom3tools/dciodvfy.html |
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84 DICOMDIR viewer working with Wine under Linux: |
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85 http://www.microdicom.com/ |
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87 ***/ |
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90 #include "../PrecompiledHeaders.h" |
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91 #include "DicomDirWriter.h" |
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92 |
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93 #include "FromDcmtkBridge.h" |
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94 #include "ToDcmtkBridge.h" |
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95 |
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96 #include "../Compatibility.h" |
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97 #include "../Logging.h" |
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98 #include "../OrthancException.h" |
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99 #include "../TemporaryFile.h" |
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100 #include "../Toolbox.h" |
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101 #include "../SystemToolbox.h" |
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102 |
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103 #include <dcmtk/dcmdata/dcdicdir.h> |
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104 #include <dcmtk/dcmdata/dcmetinf.h> |
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105 #include <dcmtk/dcmdata/dcdeftag.h> |
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106 #include <dcmtk/dcmdata/dcuid.h> |
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107 #include <dcmtk/dcmdata/dcddirif.h> |
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108 #include <dcmtk/dcmdata/dcvrui.h> |
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109 #include <dcmtk/dcmdata/dcsequen.h> |
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110 #include <dcmtk/dcmdata/dcostrmf.h> |
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111 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */ |
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112 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */ |
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113 |
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114 #include <memory> |
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115 |
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116 namespace Orthanc |
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117 { |
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118 class DicomDirWriter::PImpl |
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119 { |
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120 private: |
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121 bool utc_; |
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122 std::string fileSetId_; |
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123 bool extendedSopClass_; |
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124 TemporaryFile file_; |
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125 std::unique_ptr<DcmDicomDir> dir_; |
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126 |
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127 typedef std::pair<ResourceType, std::string> IndexKey; |
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128 typedef std::map<IndexKey, DcmDirectoryRecord* > Index; |
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129 Index index_; |
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130 |
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131 |
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132 DcmDicomDir& GetDicomDir() |
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133 { |
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134 if (dir_.get() == NULL) |
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135 { |
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136 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(), |
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137 fileSetId_.c_str())); |
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138 //SetTagValue(dir_->getRootRecord(), DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(Encoding_Utf8)); |
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139 } |
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140 |
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141 return *dir_; |
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142 } |
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143 |
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144 |
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145 DcmDirectoryRecord& GetRoot() |
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146 { |
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147 return GetDicomDir().getRootRecord(); |
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148 } |
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149 |
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150 |
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151 static bool GetUtf8TagValue(std::string& result, |
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152 DcmItem& source, |
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153 Encoding encoding, |
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154 bool hasCodeExtensions, |
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155 const DcmTagKey& key) |
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156 { |
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157 DcmElement* element = NULL; |
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158 result.clear(); |
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159 |
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160 if (source.findAndGetElement(key, element).good()) |
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161 { |
1893 | 162 char* s = NULL; |
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163 if (element->isLeaf() && |
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164 element->getString(s).good()) |
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165 { |
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166 if (s != NULL) |
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167 { |
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168 result = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
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169 } |
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170 |
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171 return true; |
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172 } |
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173 } |
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174 |
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175 return false; |
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176 } |
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177 |
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178 |
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179 static void SetTagValue(DcmDirectoryRecord& target, |
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180 const DcmTagKey& key, |
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181 const std::string& valueUtf8) |
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182 { |
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183 std::string s = Toolbox::ConvertFromUtf8(valueUtf8, Encoding_Ascii); |
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184 |
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185 if (!target.putAndInsertString(key, s.c_str()).good()) |
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186 { |
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187 throw OrthancException(ErrorCode_InternalError); |
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188 } |
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189 } |
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190 |
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191 |
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192 |
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193 static bool CopyString(DcmDirectoryRecord& target, |
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194 DcmDataset& source, |
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195 Encoding encoding, |
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196 bool hasCodeExtensions, |
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197 const DcmTagKey& key, |
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198 bool optional, |
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199 bool copyEmpty) |
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200 { |
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201 if (optional && |
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202 !source.tagExistsWithValue(key) && |
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203 !(copyEmpty && source.tagExists(key))) |
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204 { |
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205 return false; |
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206 } |
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207 |
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208 std::string value; |
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209 bool found = GetUtf8TagValue(value, source, encoding, hasCodeExtensions, key); |
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210 |
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211 if (!found) |
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212 { |
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213 // We don't raise an exception if "!optional", even if this |
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214 // results in an invalid DICOM file |
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215 value.clear(); |
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216 } |
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217 |
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218 SetTagValue(target, key, value); |
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219 return found; |
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220 } |
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221 |
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222 |
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223 static void CopyStringType1(DcmDirectoryRecord& target, |
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224 DcmDataset& source, |
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225 Encoding encoding, |
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226 bool hasCodeExtensions, |
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227 const DcmTagKey& key) |
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228 { |
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229 CopyString(target, source, encoding, hasCodeExtensions, key, false, false); |
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230 } |
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231 |
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232 static void CopyStringType1C(DcmDirectoryRecord& target, |
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233 DcmDataset& source, |
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234 Encoding encoding, |
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235 bool hasCodeExtensions, |
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236 const DcmTagKey& key) |
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237 { |
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238 CopyString(target, source, encoding, hasCodeExtensions, key, true, false); |
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239 } |
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240 |
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241 static void CopyStringType2(DcmDirectoryRecord& target, |
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242 DcmDataset& source, |
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243 Encoding encoding, |
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244 bool hasCodeExtensions, |
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245 const DcmTagKey& key) |
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246 { |
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247 CopyString(target, source, encoding, hasCodeExtensions, key, false, true); |
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248 } |
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249 |
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250 static void CopyStringType3(DcmDirectoryRecord& target, |
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251 DcmDataset& source, |
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252 Encoding encoding, |
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253 bool hasCodeExtensions, |
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254 const DcmTagKey& key) |
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255 { |
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256 CopyString(target, source, encoding, hasCodeExtensions, key, true, true); |
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257 } |
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258 |
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259 |
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260 public: |
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261 PImpl() : |
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262 utc_(true), // By default, use UTC (universal time, not local time) |
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263 fileSetId_("ORTHANC_MEDIA"), |
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264 extendedSopClass_(false) |
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265 { |
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266 } |
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267 |
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268 bool IsUtcUsed() const |
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269 { |
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270 return utc_; |
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271 } |
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272 |
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273 |
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274 void SetUtcUsed(bool utc) |
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275 { |
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276 utc_ = utc; |
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277 } |
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278 |
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279 void EnableExtendedSopClass(bool enable) |
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280 { |
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281 if (enable) |
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282 { |
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283 LOG(WARNING) << "Generating a DICOMDIR with type 3 attributes, " |
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284 << "which leads to an Extended SOP Class"; |
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285 } |
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286 |
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287 extendedSopClass_ = enable; |
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288 } |
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289 |
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290 bool IsExtendedSopClass() const |
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291 { |
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292 return extendedSopClass_; |
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293 } |
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294 |
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295 void FillPatient(DcmDirectoryRecord& record, |
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296 DcmDataset& dicom, |
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297 Encoding encoding, |
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298 bool hasCodeExtensions) |
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299 { |
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300 // cf. "DicomDirInterface::buildPatientRecord()" |
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301 |
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302 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_PatientID); |
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303 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_PatientName); |
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304 } |
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305 |
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306 void FillStudy(DcmDirectoryRecord& record, |
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307 DcmDataset& dicom, |
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308 Encoding encoding, |
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309 bool hasCodeExtensions) |
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310 { |
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311 // cf. "DicomDirInterface::buildStudyRecord()" |
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312 |
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313 std::string nowDate, nowTime; |
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314 SystemToolbox::GetNowDicom(nowDate, nowTime, utc_); |
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315 |
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316 std::string studyDate; |
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317 if (!GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_StudyDate) && |
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318 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_SeriesDate) && |
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319 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_AcquisitionDate) && |
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320 !GetUtf8TagValue(studyDate, dicom, encoding, hasCodeExtensions, DCM_ContentDate)) |
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321 { |
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322 studyDate = nowDate; |
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323 } |
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324 |
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325 std::string studyTime; |
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326 if (!GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_StudyTime) && |
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327 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_SeriesTime) && |
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328 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_AcquisitionTime) && |
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329 !GetUtf8TagValue(studyTime, dicom, encoding, hasCodeExtensions, DCM_ContentTime)) |
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330 { |
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331 studyTime = nowTime; |
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332 } |
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333 |
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334 /* copy attribute values from dataset to study record */ |
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335 SetTagValue(record, DCM_StudyDate, studyDate); |
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336 SetTagValue(record, DCM_StudyTime, studyTime); |
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337 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_StudyDescription); |
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338 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_StudyInstanceUID); |
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339 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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340 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_StudyID); |
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341 CopyStringType2(record, dicom, encoding, hasCodeExtensions, DCM_AccessionNumber); |
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342 } |
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343 |
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344 void FillSeries(DcmDirectoryRecord& record, |
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345 DcmDataset& dicom, |
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346 Encoding encoding, |
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347 bool hasCodeExtensions) |
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348 { |
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349 // cf. "DicomDirInterface::buildSeriesRecord()" |
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350 |
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351 /* copy attribute values from dataset to series record */ |
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352 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_Modality); |
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353 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_SeriesInstanceUID); |
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354 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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355 CopyStringType1C(record, dicom, encoding, hasCodeExtensions, DCM_SeriesNumber); |
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356 |
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357 // Add extended (non-standard) type 3 tags, those are not generated by DCMTK |
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358 // http://dicom.nema.org/medical/Dicom/2016a/output/chtml/part02/sect_7.3.html |
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359 // https://groups.google.com/d/msg/orthanc-users/Y7LOvZMDeoc/9cp3kDgxAwAJ |
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360 if (extendedSopClass_) |
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361 { |
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362 CopyStringType3(record, dicom, encoding, hasCodeExtensions, DCM_SeriesDescription); |
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363 } |
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364 } |
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365 |
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366 void FillInstance(DcmDirectoryRecord& record, |
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367 DcmDataset& dicom, |
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368 Encoding encoding, |
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369 bool hasCodeExtensions, |
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370 DcmMetaInfo& metaInfo, |
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371 const char* path) |
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372 { |
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373 // cf. "DicomDirInterface::buildImageRecord()" |
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374 |
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375 /* copy attribute values from dataset to image record */ |
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376 CopyStringType1(record, dicom, encoding, hasCodeExtensions, DCM_InstanceNumber); |
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377 //CopyElementType1C(record, dicom, encoding, hasCodeExtensions, DCM_ImageType); |
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378 |
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379 // REMOVED since 0.9.7: copyElementType1C(dicom, DCM_ReferencedImageSequence, record); |
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380 |
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381 std::string sopClassUid, sopInstanceUid, transferSyntaxUid; |
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382 if (!GetUtf8TagValue(sopClassUid, dicom, encoding, hasCodeExtensions, DCM_SOPClassUID) || |
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383 !GetUtf8TagValue(sopInstanceUid, dicom, encoding, hasCodeExtensions, DCM_SOPInstanceUID) || |
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384 !GetUtf8TagValue(transferSyntaxUid, metaInfo, encoding, hasCodeExtensions, DCM_TransferSyntaxUID)) |
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385 { |
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386 throw OrthancException(ErrorCode_BadFileFormat); |
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387 } |
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388 |
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389 SetTagValue(record, DCM_ReferencedFileID, path); |
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390 SetTagValue(record, DCM_ReferencedSOPClassUIDInFile, sopClassUid); |
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391 SetTagValue(record, DCM_ReferencedSOPInstanceUIDInFile, sopInstanceUid); |
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392 SetTagValue(record, DCM_ReferencedTransferSyntaxUIDInFile, transferSyntaxUid); |
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393 } |
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394 |
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395 |
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396 |
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397 bool CreateResource(DcmDirectoryRecord*& target, |
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398 ResourceType level, |
4200 | 399 const ParsedDicomFile& dicom, |
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400 const char* filename, |
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401 const char* path) |
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402 { |
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403 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset(); |
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404 |
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405 bool hasCodeExtensions; |
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406 Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); |
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407 |
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408 bool found; |
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409 std::string id; |
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410 E_DirRecType type; |
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411 |
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412 switch (level) |
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413 { |
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414 case ResourceType_Patient: |
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415 if (!GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_PatientID)) |
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416 { |
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417 // Be tolerant about missing patient ID. Fixes issue #124 |
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418 // (GET /studies/ID/media fails for certain dicom file). |
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419 id = ""; |
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420 } |
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421 |
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422 found = true; |
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423 type = ERT_Patient; |
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424 break; |
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425 |
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426 case ResourceType_Study: |
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427 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_StudyInstanceUID); |
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428 type = ERT_Study; |
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429 break; |
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430 |
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431 case ResourceType_Series: |
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432 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_SeriesInstanceUID); |
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433 type = ERT_Series; |
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434 break; |
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435 |
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436 case ResourceType_Instance: |
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437 found = GetUtf8TagValue(id, dataset, encoding, hasCodeExtensions, DCM_SOPInstanceUID); |
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438 type = ERT_Image; |
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439 break; |
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440 |
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441 default: |
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|
442 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
443 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
444 |
1885
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refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
445 if (!found) |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
446 { |
1885
5be57564ffc4
refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
447 throw OrthancException(ErrorCode_BadFileFormat); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
448 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
449 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
450 IndexKey key = std::make_pair(level, std::string(id.c_str())); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
451 Index::iterator it = index_.find(key); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
452 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
453 if (it != index_.end()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
454 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
455 target = it->second; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
456 return false; // Already existing |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
457 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
458 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
459 std::unique_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename)); |
1121
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
460 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
461 switch (level) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
462 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
463 case ResourceType_Patient: |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
464 FillPatient(*record, dataset, encoding, hasCodeExtensions); |
1121
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
465 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
466 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
467 case ResourceType_Study: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
468 FillStudy(*record, dataset, encoding, hasCodeExtensions); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
469 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
470 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
471 case ResourceType_Series: |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
472 FillSeries(*record, dataset, encoding, hasCodeExtensions); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
473 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
474 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
475 case ResourceType_Instance: |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
476 FillInstance(*record, dataset, encoding, hasCodeExtensions, *dicom.GetDcmtkObject().getMetaInfo(), path); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
477 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
478 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
479 default: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
480 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
481 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
482 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3107
diff
changeset
|
483 CopyStringType1C(*record, dataset, encoding, hasCodeExtensions, DCM_SpecificCharacterSet); |
1121
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
484 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
485 target = record.get(); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
486 GetRoot().insertSub(record.release()); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
487 index_[key] = target; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
488 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
489 return true; // Newly created |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
490 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
491 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
492 void Read(std::string& s) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
493 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
494 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
495 EET_UndefinedLength /*encodingType*/, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
496 EGL_withoutGL /*groupLength*/).good()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
497 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
498 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
499 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
500 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
501 file_.Read(s); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
502 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
503 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
504 void SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
505 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
506 dir_.reset(NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
507 fileSetId_ = id; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
508 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
509 }; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
510 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
511 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
512 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
513 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
514 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
515 |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
516 void DicomDirWriter::SetUtcUsed(bool utc) |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
517 { |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
518 pimpl_->SetUtcUsed(utc); |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
519 } |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
520 |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
521 bool DicomDirWriter::IsUtcUsed() const |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
522 { |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
523 return pimpl_->IsUtcUsed(); |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
524 } |
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
525 |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
526 void DicomDirWriter::SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
527 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
528 pimpl_->SetFileSetId(id); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
529 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
530 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
531 void DicomDirWriter::Add(const std::string& directory, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
532 const std::string& filename, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
533 ParsedDicomFile& dicom) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
534 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
535 std::string path; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
536 if (directory.empty()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
537 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
538 path = filename; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
539 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
540 else |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
541 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
542 if (directory[directory.length() - 1] == '/' || |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
543 directory[directory.length() - 1] == '\\') |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
544 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
545 throw OrthancException(ErrorCode_ParameterOutOfRange); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
546 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
547 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
548 path = directory + '\\' + filename; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
549 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
550 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
551 DcmDirectoryRecord* instance; |
1885
5be57564ffc4
refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
552 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, dicom, filename.c_str(), path.c_str()); |
1121
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
553 if (isNewInstance) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
554 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
555 DcmDirectoryRecord* series; |
1885
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556 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, dicom, filename.c_str(), NULL); |
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557 series->insertSub(instance); |
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558 |
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559 if (isNewSeries) |
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560 { |
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561 DcmDirectoryRecord* study; |
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562 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, dicom, filename.c_str(), NULL); |
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563 study->insertSub(series); |
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564 |
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565 if (isNewStudy) |
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566 { |
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567 DcmDirectoryRecord* patient; |
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568 pimpl_->CreateResource(patient, ResourceType_Patient, dicom, filename.c_str(), NULL); |
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569 patient->insertSub(study); |
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570 } |
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571 } |
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572 } |
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573 } |
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574 |
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575 void DicomDirWriter::Encode(std::string& target) |
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576 { |
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577 pimpl_->Read(target); |
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578 } |
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579 |
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580 |
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581 void DicomDirWriter::EnableExtendedSopClass(bool enable) |
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582 { |
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583 pimpl_->EnableExtendedSopClass(enable); |
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584 } |
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585 |
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586 |
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587 bool DicomDirWriter::IsExtendedSopClass() const |
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588 { |
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589 return pimpl_->IsExtendedSopClass(); |
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590 } |
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591 } |