Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/StatelessDatabaseOperations.h @ 5102:071e1faee1c1
added orthanc framework 1.11.2
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 27 Oct 2022 10:48:41 +0200 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #pragma once |
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24 |
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25 #include "../../../OrthancFramework/Sources/DicomFormat/DicomMap.h" |
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26 |
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27 #include "IDatabaseWrapper.h" |
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28 #include "../DicomInstanceOrigin.h" |
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29 |
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30 #include <boost/shared_ptr.hpp> |
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31 #include <boost/thread/shared_mutex.hpp> |
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32 |
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33 |
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34 namespace Orthanc |
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35 { |
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36 class DatabaseLookup; |
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37 class ParsedDicomFile; |
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39 |
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40 struct ExpandedResource : public boost::noncopyable |
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41 { |
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42 std::string id_; |
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43 DicomMap tags_; // all main tags and main sequences from DB |
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44 std::string mainDicomTagsSignature_; |
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45 std::string parentId_; |
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46 std::list<std::string> childrenIds_; |
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47 std::map<MetadataType, std::string> metadata_; |
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48 ResourceType type_; |
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49 std::string anonymizedFrom_; |
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50 std::string modifiedFrom_; |
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51 std::string lastUpdate_; |
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52 std::set<DicomTag> missingRequestedTags_; |
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53 |
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54 // for patients/studies/series |
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55 bool isStable_; |
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56 |
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57 // for series only |
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58 int expectedNumberOfInstances_; |
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59 std::string status_; |
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60 |
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61 // for instances only |
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62 size_t fileSize_; |
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63 std::string fileUuid_; |
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64 int indexInSeries_; |
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65 }; |
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66 |
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67 enum ExpandResourceDbFlags |
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68 { |
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69 ExpandResourceDbFlags_None = 0, |
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70 ExpandResourceDbFlags_IncludeMetadata = (1 << 0), |
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71 ExpandResourceDbFlags_IncludeChildren = (1 << 1), |
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72 ExpandResourceDbFlags_IncludeMainDicomTags = (1 << 2), |
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73 |
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74 ExpandResourceDbFlags_Default = (ExpandResourceDbFlags_IncludeMetadata | |
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75 ExpandResourceDbFlags_IncludeChildren | |
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76 ExpandResourceDbFlags_IncludeMainDicomTags) |
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77 }; |
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78 |
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79 class StatelessDatabaseOperations : public boost::noncopyable |
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80 { |
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81 public: |
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82 typedef std::list<FileInfo> Attachments; |
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83 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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84 |
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85 class ITransactionContext : public IDatabaseListener |
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86 { |
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87 public: |
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88 virtual ~ITransactionContext() |
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89 { |
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90 } |
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91 |
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92 virtual void Commit() = 0; |
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93 |
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94 virtual int64_t GetCompressedSizeDelta() = 0; |
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95 |
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96 virtual bool IsUnstableResource(int64_t id) = 0; |
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97 |
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98 virtual bool LookupRemainingLevel(std::string& remainingPublicId /* out */, |
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99 ResourceType& remainingLevel /* out */) = 0; |
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100 |
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101 virtual void MarkAsUnstable(int64_t id, |
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102 Orthanc::ResourceType type, |
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103 const std::string& publicId) = 0; |
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104 |
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105 virtual void SignalAttachmentsAdded(uint64_t compressedSize) = 0; |
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106 |
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107 virtual void SignalChange(const ServerIndexChange& change) = 0; |
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108 }; |
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109 |
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110 |
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111 class ITransactionContextFactory : public boost::noncopyable |
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112 { |
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113 public: |
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114 virtual ~ITransactionContextFactory() |
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115 { |
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116 } |
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117 |
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118 // WARNING: This method can be invoked from several threads concurrently |
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119 virtual ITransactionContext* Create() = 0; |
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120 }; |
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121 |
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122 |
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123 class ReadOnlyTransaction : public boost::noncopyable |
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124 { |
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125 private: |
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126 ITransactionContext& context_; |
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127 |
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128 protected: |
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129 IDatabaseWrapper::ITransaction& transaction_; |
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130 |
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131 public: |
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132 explicit ReadOnlyTransaction(IDatabaseWrapper::ITransaction& transaction, |
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133 ITransactionContext& context) : |
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134 context_(context), |
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135 transaction_(transaction) |
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136 { |
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137 } |
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138 |
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139 ITransactionContext& GetTransactionContext() |
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140 { |
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141 return context_; |
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142 } |
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143 |
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144 /** |
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145 * Higher-level constructions |
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146 **/ |
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147 |
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148 SeriesStatus GetSeriesStatus(int64_t id, |
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149 int64_t expectedNumberOfInstances); |
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150 |
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151 |
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152 /** |
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153 * Read-only methods from "IDatabaseWrapper" |
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154 **/ |
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155 |
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156 void ApplyLookupResources(std::list<std::string>& resourcesId, |
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157 std::list<std::string>* instancesId, // Can be NULL if not needed |
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158 const std::vector<DatabaseConstraint>& lookup, |
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159 ResourceType queryLevel, |
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160 size_t limit) |
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161 { |
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162 return transaction_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); |
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163 } |
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164 |
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165 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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166 int64_t id) |
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167 { |
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168 transaction_.GetAllMetadata(target, id); |
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169 } |
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170 |
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171 void GetAllPublicIds(std::list<std::string>& target, |
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172 ResourceType resourceType) |
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173 { |
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174 return transaction_.GetAllPublicIds(target, resourceType); |
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175 } |
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176 |
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177 void GetAllPublicIds(std::list<std::string>& target, |
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178 ResourceType resourceType, |
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179 size_t since, |
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180 size_t limit) |
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181 { |
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182 return transaction_.GetAllPublicIds(target, resourceType, since, limit); |
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183 } |
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184 |
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185 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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186 bool& done /*out*/, |
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187 int64_t since, |
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188 uint32_t maxResults) |
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189 { |
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190 transaction_.GetChanges(target, done, since, maxResults); |
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191 } |
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192 |
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193 void GetChildrenInternalId(std::list<int64_t>& target, |
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194 int64_t id) |
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195 { |
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196 transaction_.GetChildrenInternalId(target, id); |
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197 } |
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198 |
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199 void GetChildrenPublicId(std::list<std::string>& target, |
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200 int64_t id) |
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201 { |
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202 transaction_.GetChildrenPublicId(target, id); |
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203 } |
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204 |
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205 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
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206 bool& done /*out*/, |
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207 int64_t since, |
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208 uint32_t maxResults) |
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209 { |
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210 return transaction_.GetExportedResources(target, done, since, maxResults); |
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211 } |
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212 |
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213 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) |
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214 { |
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215 transaction_.GetLastChange(target); |
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216 } |
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217 |
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218 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) |
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219 { |
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220 return transaction_.GetLastExportedResource(target); |
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221 } |
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222 |
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223 int64_t GetLastChangeIndex() |
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224 { |
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225 return transaction_.GetLastChangeIndex(); |
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226 } |
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227 |
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228 void GetMainDicomTags(DicomMap& map, |
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229 int64_t id) |
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230 { |
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231 transaction_.GetMainDicomTags(map, id); |
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232 } |
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233 |
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234 std::string GetPublicId(int64_t resourceId) |
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235 { |
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236 return transaction_.GetPublicId(resourceId); |
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237 } |
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238 |
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239 uint64_t GetResourcesCount(ResourceType resourceType) |
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240 { |
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241 return transaction_.GetResourcesCount(resourceType); |
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242 } |
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243 |
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244 ResourceType GetResourceType(int64_t resourceId) |
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245 { |
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246 return transaction_.GetResourceType(resourceId); |
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247 } |
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248 |
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249 uint64_t GetTotalCompressedSize() |
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250 { |
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251 return transaction_.GetTotalCompressedSize(); |
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252 } |
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253 |
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254 uint64_t GetTotalUncompressedSize() |
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255 { |
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256 return transaction_.GetTotalUncompressedSize(); |
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257 } |
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258 |
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259 bool IsProtectedPatient(int64_t internalId) |
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260 { |
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261 return transaction_.IsProtectedPatient(internalId); |
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262 } |
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263 |
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264 void ListAvailableAttachments(std::set<FileContentType>& target, |
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265 int64_t id) |
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266 { |
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267 transaction_.ListAvailableAttachments(target, id); |
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268 } |
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269 |
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270 bool LookupAttachment(FileInfo& attachment, |
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271 int64_t& revision, |
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272 int64_t id, |
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273 FileContentType contentType) |
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274 { |
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275 return transaction_.LookupAttachment(attachment, revision, id, contentType); |
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276 } |
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277 |
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278 bool LookupGlobalProperty(std::string& target, |
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279 GlobalProperty property, |
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280 bool shared) |
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281 { |
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282 return transaction_.LookupGlobalProperty(target, property, shared); |
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283 } |
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284 |
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285 bool LookupMetadata(std::string& target, |
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286 int64_t& revision, |
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287 int64_t id, |
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288 MetadataType type) |
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289 { |
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290 return transaction_.LookupMetadata(target, revision, id, type); |
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291 } |
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292 |
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293 bool LookupParent(int64_t& parentId, |
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294 int64_t resourceId) |
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295 { |
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296 return transaction_.LookupParent(parentId, resourceId); |
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297 } |
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298 |
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299 bool LookupResource(int64_t& id, |
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300 ResourceType& type, |
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301 const std::string& publicId) |
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302 { |
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303 return transaction_.LookupResource(id, type, publicId); |
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304 } |
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305 |
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306 bool LookupResourceAndParent(int64_t& id, |
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307 ResourceType& type, |
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308 std::string& parentPublicId, |
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309 const std::string& publicId) |
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310 { |
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311 return transaction_.LookupResourceAndParent(id, type, parentPublicId, publicId); |
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312 } |
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313 }; |
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314 |
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315 |
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316 class ReadWriteTransaction : public ReadOnlyTransaction |
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317 { |
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318 public: |
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319 ReadWriteTransaction(IDatabaseWrapper::ITransaction& transaction, |
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320 ITransactionContext& context) : |
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321 ReadOnlyTransaction(transaction, context) |
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322 { |
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323 } |
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324 |
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325 void AddAttachment(int64_t id, |
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326 const FileInfo& attachment, |
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327 int64_t revision) |
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328 { |
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329 transaction_.AddAttachment(id, attachment, revision); |
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330 } |
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331 |
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332 void ClearChanges() |
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333 { |
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334 transaction_.ClearChanges(); |
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335 } |
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336 |
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337 void ClearExportedResources() |
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338 { |
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339 transaction_.ClearExportedResources(); |
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340 } |
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341 |
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342 void ClearMainDicomTags(int64_t id) |
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343 { |
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344 return transaction_.ClearMainDicomTags(id); |
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345 } |
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346 |
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347 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ |
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348 int64_t& instanceId, /* out */ |
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349 const std::string& patient, |
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350 const std::string& study, |
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351 const std::string& series, |
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352 const std::string& instance) |
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353 { |
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354 return transaction_.CreateInstance(result, instanceId, patient, study, series, instance); |
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355 } |
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356 |
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357 void DeleteAttachment(int64_t id, |
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358 FileContentType attachment) |
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359 { |
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360 return transaction_.DeleteAttachment(id, attachment); |
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361 } |
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362 |
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363 void DeleteMetadata(int64_t id, |
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364 MetadataType type) |
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365 { |
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366 transaction_.DeleteMetadata(id, type); |
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367 } |
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368 |
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369 void DeleteResource(int64_t id) |
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370 { |
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371 transaction_.DeleteResource(id); |
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372 } |
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373 |
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374 void LogChange(int64_t internalId, |
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375 ChangeType changeType, |
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376 ResourceType resourceType, |
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377 const std::string& publicId); |
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378 |
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379 void LogExportedResource(const ExportedResource& resource) |
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380 { |
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381 transaction_.LogExportedResource(resource); |
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382 } |
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383 |
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384 void SetGlobalProperty(GlobalProperty property, |
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385 bool shared, |
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386 const std::string& value) |
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387 { |
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388 transaction_.SetGlobalProperty(property, shared, value); |
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389 } |
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390 |
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391 void SetMetadata(int64_t id, |
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392 MetadataType type, |
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393 const std::string& value, |
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394 int64_t revision) |
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395 { |
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396 return transaction_.SetMetadata(id, type, value, revision); |
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397 } |
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398 |
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399 void SetProtectedPatient(int64_t internalId, |
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400 bool isProtected) |
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401 { |
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402 transaction_.SetProtectedPatient(internalId, isProtected); |
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403 } |
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404 |
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405 void SetResourcesContent(const ResourcesContent& content) |
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406 { |
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407 transaction_.SetResourcesContent(content); |
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408 } |
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409 |
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410 void Recycle(uint64_t maximumStorageSize, |
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411 unsigned int maximumPatients, |
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412 uint64_t addedInstanceSize, |
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413 const std::string& newPatientId); |
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414 |
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415 bool HasReachedMaxStorageSize(uint64_t maximumStorageSize, |
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416 uint64_t addedInstanceSize); |
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417 |
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418 bool HasReachedMaxPatientCount(unsigned int maximumPatientCount, |
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419 const std::string& patientId); |
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420 |
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421 bool IsRecyclingNeeded(uint64_t maximumStorageSize, |
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422 unsigned int maximumPatients, |
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423 uint64_t addedInstanceSize, |
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424 const std::string& newPatientId); |
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425 }; |
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426 |
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427 |
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428 class IReadOnlyOperations : public boost::noncopyable |
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429 { |
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430 public: |
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431 virtual ~IReadOnlyOperations() |
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432 { |
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433 } |
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434 |
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435 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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436 }; |
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437 |
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438 |
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439 class IReadWriteOperations : public boost::noncopyable |
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440 { |
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441 public: |
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442 virtual ~IReadWriteOperations() |
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443 { |
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444 } |
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445 |
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446 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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447 }; |
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448 |
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449 |
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450 private: |
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451 class MainDicomTagsRegistry; |
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452 class Transaction; |
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453 |
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454 IDatabaseWrapper& db_; |
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455 boost::shared_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; // "shared_ptr" because of PImpl |
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456 bool hasFlushToDisk_; |
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457 |
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458 // Mutex to protect the configuration options |
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459 boost::shared_mutex mutex_; |
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460 std::unique_ptr<ITransactionContextFactory> factory_; |
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461 unsigned int maxRetries_; |
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462 |
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463 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
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464 const DatabaseLookup& source, |
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465 ResourceType level) const; |
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466 |
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467 void ApplyInternal(IReadOnlyOperations* readOperations, |
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468 IReadWriteOperations* writeOperations); |
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469 |
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470 protected: |
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471 void StandaloneRecycling(MaxStorageMode maximumStorageMode, |
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472 uint64_t maximumStorageSize, |
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473 unsigned int maximumPatientCount); |
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474 |
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475 public: |
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476 explicit StatelessDatabaseOperations(IDatabaseWrapper& database); |
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477 |
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478 void SetTransactionContextFactory(ITransactionContextFactory* factory /* takes ownership */); |
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479 |
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480 // Only used to handle "ErrorCode_DatabaseCannotSerialize" in the |
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481 // case of collision between multiple writers |
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482 void SetMaxDatabaseRetries(unsigned int maxRetries); |
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483 |
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484 // It is assumed that "GetDatabaseVersion()" can run out of a |
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485 // database transaction |
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486 unsigned int GetDatabaseVersion() |
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487 { |
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488 return db_.GetDatabaseVersion(); |
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489 } |
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490 |
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491 void FlushToDisk(); |
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492 |
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493 bool HasFlushToDisk() const |
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494 { |
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495 return hasFlushToDisk_; |
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496 } |
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497 |
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498 void Apply(IReadOnlyOperations& operations); |
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499 |
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500 void Apply(IReadWriteOperations& operations); |
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501 |
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502 bool ExpandResource(ExpandedResource& target, |
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503 const std::string& publicId, |
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Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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504 ResourceType level, |
4940
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505 const std::set<DicomTag>& requestedTags, |
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506 ExpandResourceDbFlags expandFlags); |
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507 |
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508 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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509 const std::string& publicId, |
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510 ResourceType level); |
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511 |
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512 void GetAllUuids(std::list<std::string>& target, |
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513 ResourceType resourceType); |
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514 |
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515 void GetAllUuids(std::list<std::string>& target, |
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516 ResourceType resourceType, |
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517 size_t since, |
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518 size_t limit); |
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519 |
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520 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
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521 /* out */ uint64_t& uncompressedSize, |
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522 /* out */ uint64_t& countPatients, |
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523 /* out */ uint64_t& countStudies, |
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524 /* out */ uint64_t& countSeries, |
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525 /* out */ uint64_t& countInstances); |
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526 |
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|
527 bool LookupAttachment(FileInfo& attachment, |
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4623
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|
528 int64_t& revision, |
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529 const std::string& instancePublicId, |
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530 FileContentType contentType); |
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|
531 |
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532 void GetChanges(Json::Value& target, |
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533 int64_t since, |
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534 unsigned int maxResults); |
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535 |
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|
536 void GetLastChange(Json::Value& target); |
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|
537 |
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|
538 void GetExportedResources(Json::Value& target, |
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539 int64_t since, |
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|
540 unsigned int maxResults); |
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541 |
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542 void GetLastExportedResource(Json::Value& target); |
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543 |
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544 bool IsProtectedPatient(const std::string& publicId); |
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545 |
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|
546 void GetChildren(std::list<std::string>& result, |
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547 const std::string& publicId); |
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548 |
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549 void GetChildInstances(std::list<std::string>& result, |
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550 const std::string& publicId); |
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551 |
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changeset
|
552 bool LookupMetadata(std::string& target, |
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|
553 int64_t& revision, |
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554 const std::string& publicId, |
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555 ResourceType expectedType, |
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|
556 MetadataType type); |
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557 |
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|
558 void ListAvailableAttachments(std::set<FileContentType>& target, |
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559 const std::string& publicId, |
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|
560 ResourceType expectedType); |
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561 |
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|
562 bool LookupParent(std::string& target, |
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563 const std::string& publicId); |
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564 |
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|
565 void GetResourceStatistics(/* out */ ResourceType& type, |
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566 /* out */ uint64_t& diskSize, |
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|
567 /* out */ uint64_t& uncompressedSize, |
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|
568 /* out */ unsigned int& countStudies, |
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|
569 /* out */ unsigned int& countSeries, |
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570 /* out */ unsigned int& countInstances, |
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|
571 /* out */ uint64_t& dicomDiskSize, |
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|
572 /* out */ uint64_t& dicomUncompressedSize, |
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|
573 const std::string& publicId); |
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574 |
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|
575 void LookupIdentifierExact(std::vector<std::string>& result, |
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576 ResourceType level, |
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|
577 const DicomTag& tag, |
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578 const std::string& value); |
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579 |
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580 bool LookupGlobalProperty(std::string& value, |
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581 GlobalProperty property, |
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582 bool shared); |
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583 |
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584 std::string GetGlobalProperty(GlobalProperty property, |
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585 bool shared, |
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586 const std::string& defaultValue); |
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587 |
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588 bool GetMainDicomTags(DicomMap& result, |
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589 const std::string& publicId, |
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590 ResourceType expectedType, |
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591 ResourceType levelOfInterest); |
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592 |
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593 // Only applicable at the instance level |
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594 bool GetAllMainDicomTags(DicomMap& result, |
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595 const std::string& instancePublicId); |
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596 |
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597 bool LookupResourceType(ResourceType& type, |
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598 const std::string& publicId); |
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599 |
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600 bool LookupParent(std::string& target, |
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601 const std::string& publicId, |
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602 ResourceType parentType); |
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603 |
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604 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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605 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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606 const DatabaseLookup& lookup, |
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607 ResourceType queryLevel, |
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608 size_t limit); |
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|
609 |
4694
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610 bool DeleteResource(Json::Value& remainingAncestor /* out */, |
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611 const std::string& uuid, |
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612 ResourceType expectedType); |
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613 |
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614 void LogExportedResource(const std::string& publicId, |
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615 const std::string& remoteModality); |
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616 |
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617 void SetProtectedPatient(const std::string& publicId, |
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618 bool isProtected); |
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619 |
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620 void SetMetadata(int64_t& newRevision /*out*/, |
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621 const std::string& publicId, |
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622 MetadataType type, |
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|
623 const std::string& value, |
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624 bool hasOldRevision, |
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|
625 int64_t oldRevision, |
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|
626 const std::string& oldMD5); |
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627 |
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628 // Same as "SetMetadata()", but doesn't care about revisions |
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629 void OverwriteMetadata(const std::string& publicId, |
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630 MetadataType type, |
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|
631 const std::string& value); |
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|
632 |
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|
633 bool DeleteMetadata(const std::string& publicId, |
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634 MetadataType type, |
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|
635 bool hasRevision, |
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|
636 int64_t revision, |
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|
637 const std::string& md5); |
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638 |
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|
639 uint64_t IncrementGlobalSequence(GlobalProperty sequence, |
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640 bool shared); |
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|
641 |
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642 void DeleteChanges(); |
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|
643 |
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|
644 void DeleteExportedResources(); |
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|
645 |
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|
646 void SetGlobalProperty(GlobalProperty property, |
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647 bool shared, |
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|
648 const std::string& value); |
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|
649 |
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|
650 bool DeleteAttachment(const std::string& publicId, |
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651 FileContentType type, |
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|
652 bool hasRevision, |
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653 int64_t revision, |
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|
654 const std::string& md5); |
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|
655 |
4587
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|
656 void LogChange(int64_t internalId, |
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|
657 ChangeType changeType, |
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|
658 const std::string& publicId, |
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|
659 ResourceType level); |
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|
660 |
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|
661 void ReconstructInstance(const ParsedDicomFile& dicom); |
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|
662 |
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|
663 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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|
664 const DicomMap& dicomSummary, |
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|
665 const Attachments& attachments, |
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666 const MetadataMap& metadata, |
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|
667 const DicomInstanceOrigin& origin, |
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668 bool overwrite, |
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|
669 bool hasTransferSyntax, |
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|
670 DicomTransferSyntax transferSyntax, |
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671 bool hasPixelDataOffset, |
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|
672 uint64_t pixelDataOffset, |
5061
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5044
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changeset
|
673 MaxStorageMode maximumStorageMode, |
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|
674 uint64_t maximumStorageSize, |
4988
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|
675 unsigned int maximumPatients, |
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|
676 bool isReconstruct); |
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|
677 |
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|
678 StoreStatus AddAttachment(int64_t& newRevision /*out*/, |
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|
679 const FileInfo& attachment, |
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|
680 const std::string& publicId, |
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681 uint64_t maximumStorageSize, |
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|
682 unsigned int maximumPatients, |
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|
683 bool hasOldRevision, |
4640
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|
684 int64_t oldRevision, |
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|
685 const std::string& oldMd5); |
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|
686 }; |
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687 } |