Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3177:053e72ff9fc5
new metrics: orthanc_jobs_[pending|running|completed]
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 30 Jan 2019 10:24:12 +0100 |
parents | 8ea7c4546c3a |
children | 4bbadcd03966 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
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41 #include "../Core/DicomFormat/DicomArray.h" |
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42 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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43 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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44 #include "../Core/Logging.h" |
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45 #include "../Core/Toolbox.h" |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "DicomInstanceToStore.h" |
8 | 49 #include "EmbeddedResources.h" |
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50 #include "OrthancConfiguration.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "Search/DicomTagConstraint.h" |
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53 #include "ServerContext.h" |
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54 #include "ServerIndexChange.h" |
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55 #include "ServerToolbox.h" |
0 | 56 |
57 #include <boost/lexical_cast.hpp> | |
58 #include <stdio.h> | |
59 | |
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60 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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61 |
62 | 62 namespace Orthanc |
0 | 63 { |
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64 static void CopyListToVector(std::vector<std::string>& target, |
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65 const std::list<std::string>& source) |
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66 { |
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67 target.resize(source.size()); |
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68 |
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69 size_t pos = 0; |
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70 |
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71 for (std::list<std::string>::const_iterator |
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72 it = source.begin(); it != source.end(); ++it) |
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73 { |
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74 target[pos] = *it; |
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75 pos ++; |
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76 } |
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77 } |
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78 |
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79 |
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80 class ServerIndex::Listener : public IDatabaseListener |
0 | 81 { |
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82 private: |
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83 struct FileToRemove |
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84 { |
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85 private: |
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86 std::string uuid_; |
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87 FileContentType type_; |
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88 |
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89 public: |
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90 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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91 type_(info.GetContentType()) |
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92 { |
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93 } |
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94 |
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95 const std::string& GetUuid() const |
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96 { |
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97 return uuid_; |
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98 } |
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99 |
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100 FileContentType GetContentType() const |
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101 { |
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102 return type_; |
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103 } |
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104 }; |
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105 |
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106 ServerContext& context_; |
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107 bool hasRemainingLevel_; |
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108 ResourceType remainingType_; |
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109 std::string remainingPublicId_; |
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110 std::list<FileToRemove> pendingFilesToRemove_; |
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111 std::list<ServerIndexChange> pendingChanges_; |
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112 uint64_t sizeOfFilesToRemove_; |
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113 bool insideTransaction_; |
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114 |
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115 void Reset() |
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116 { |
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117 sizeOfFilesToRemove_ = 0; |
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118 hasRemainingLevel_ = false; |
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119 pendingFilesToRemove_.clear(); |
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120 pendingChanges_.clear(); |
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121 } |
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122 |
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123 public: |
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124 Listener(ServerContext& context) : context_(context), |
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125 insideTransaction_(false) |
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126 { |
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127 Reset(); |
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128 assert(ResourceType_Patient < ResourceType_Study && |
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129 ResourceType_Study < ResourceType_Series && |
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130 ResourceType_Series < ResourceType_Instance); |
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131 } |
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132 |
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133 void StartTransaction() |
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134 { |
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135 Reset(); |
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136 insideTransaction_ = true; |
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137 } |
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138 |
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139 void EndTransaction() |
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140 { |
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141 insideTransaction_ = false; |
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142 } |
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143 |
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144 uint64_t GetSizeOfFilesToRemove() |
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145 { |
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146 return sizeOfFilesToRemove_; |
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147 } |
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148 |
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149 void CommitFilesToRemove() |
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150 { |
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151 for (std::list<FileToRemove>::const_iterator |
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152 it = pendingFilesToRemove_.begin(); |
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153 it != pendingFilesToRemove_.end(); ++it) |
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154 { |
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155 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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156 } |
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157 } |
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158 |
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159 void CommitChanges() |
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160 { |
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161 for (std::list<ServerIndexChange>::const_iterator |
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162 it = pendingChanges_.begin(); |
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163 it != pendingChanges_.end(); ++it) |
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164 { |
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165 context_.SignalChange(*it); |
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166 } |
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167 } |
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168 |
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169 virtual void SignalRemainingAncestor(ResourceType parentType, |
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170 const std::string& publicId) |
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171 { |
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172 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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173 |
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174 if (hasRemainingLevel_) |
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175 { |
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176 if (parentType < remainingType_) |
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177 { |
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178 remainingType_ = parentType; |
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179 remainingPublicId_ = publicId; |
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180 } |
1158 | 181 } |
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182 else |
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183 { |
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184 hasRemainingLevel_ = true; |
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185 remainingType_ = parentType; |
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186 remainingPublicId_ = publicId; |
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187 } |
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188 } |
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189 |
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190 virtual void SignalFileDeleted(const FileInfo& info) |
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191 { |
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192 assert(Toolbox::IsUuid(info.GetUuid())); |
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193 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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194 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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195 } |
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196 |
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197 virtual void SignalChange(const ServerIndexChange& change) |
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198 { |
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199 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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200 << EnumerationToString(change.GetResourceType()) << ": " |
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201 << EnumerationToString(change.GetChangeType()); |
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202 |
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203 if (insideTransaction_) |
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204 { |
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205 pendingChanges_.push_back(change); |
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206 } |
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207 else |
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208 { |
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209 context_.SignalChange(change); |
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210 } |
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211 } |
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212 |
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213 bool HasRemainingLevel() const |
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214 { |
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215 return hasRemainingLevel_; |
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216 } |
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217 |
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218 ResourceType GetRemainingType() const |
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219 { |
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220 assert(HasRemainingLevel()); |
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221 return remainingType_; |
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222 } |
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223 |
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224 const std::string& GetRemainingPublicId() const |
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225 { |
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226 assert(HasRemainingLevel()); |
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227 return remainingPublicId_; |
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228 } |
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229 }; |
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231 | |
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232 class ServerIndex::Transaction |
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233 { |
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234 private: |
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235 ServerIndex& index_; |
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236 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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237 bool isCommitted_; |
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238 |
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239 public: |
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240 Transaction(ServerIndex& index) : |
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241 index_(index), |
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242 isCommitted_(false) |
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243 { |
1247 | 244 transaction_.reset(index_.db_.StartTransaction()); |
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245 transaction_->Begin(); |
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246 |
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247 index_.listener_->StartTransaction(); |
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248 } |
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249 |
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250 ~Transaction() |
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251 { |
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252 index_.listener_->EndTransaction(); |
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253 |
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254 if (!isCommitted_) |
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255 { |
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256 transaction_->Rollback(); |
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257 } |
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258 } |
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259 |
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260 void Commit(uint64_t sizeOfAddedFiles) |
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261 { |
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262 if (!isCommitted_) |
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263 { |
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264 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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265 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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266 |
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267 transaction_->Commit(delta); |
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268 |
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269 // We can remove the files once the SQLite transaction has |
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270 // been successfully committed. Some files might have to be |
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271 // deleted because of recycling. |
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272 index_.listener_->CommitFilesToRemove(); |
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273 |
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274 // Send all the pending changes to the Orthanc plugins |
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275 index_.listener_->CommitChanges(); |
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276 |
278
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277 isCommitted_ = true; |
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278 } |
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279 } |
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280 }; |
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281 |
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282 |
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283 class ServerIndex::UnstableResourcePayload |
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284 { |
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285 private: |
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286 ResourceType type_; |
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287 std::string publicId_; |
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288 boost::posix_time::ptime time_; |
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289 |
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290 public: |
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291 UnstableResourcePayload() : type_(ResourceType_Instance) |
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292 { |
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293 } |
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294 |
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295 UnstableResourcePayload(Orthanc::ResourceType type, |
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296 const std::string& publicId) : |
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297 type_(type), |
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298 publicId_(publicId) |
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299 { |
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300 time_ = boost::posix_time::second_clock::local_time(); |
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301 } |
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302 |
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303 unsigned int GetAge() const |
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304 { |
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305 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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306 } |
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307 |
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308 ResourceType GetResourceType() const |
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309 { |
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310 return type_; |
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311 } |
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312 |
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313 const std::string& GetPublicId() const |
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314 { |
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315 return publicId_; |
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316 } |
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317 }; |
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318 |
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319 |
3027 | 320 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
321 { | |
322 private: | |
323 class TagInfo | |
324 { | |
325 private: | |
326 ResourceType level_; | |
327 DicomTagType type_; | |
328 | |
329 public: | |
330 TagInfo() | |
331 { | |
332 } | |
333 | |
334 TagInfo(ResourceType level, | |
335 DicomTagType type) : | |
336 level_(level), | |
337 type_(type) | |
338 { | |
339 } | |
340 | |
341 ResourceType GetLevel() const | |
342 { | |
343 return level_; | |
344 } | |
345 | |
346 DicomTagType GetType() const | |
347 { | |
348 return type_; | |
349 } | |
350 }; | |
351 | |
352 typedef std::map<DicomTag, TagInfo> Registry; | |
353 | |
354 | |
355 Registry registry_; | |
356 | |
357 void LoadTags(ResourceType level) | |
358 { | |
359 const DicomTag* tags = NULL; | |
360 size_t size; | |
361 | |
362 ServerToolbox::LoadIdentifiers(tags, size, level); | |
363 | |
364 for (size_t i = 0; i < size; i++) | |
365 { | |
366 if (registry_.find(tags[i]) == registry_.end()) | |
367 { | |
368 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
369 } | |
370 else | |
371 { | |
372 // These patient-level tags are copied in the study level | |
373 assert(level == ResourceType_Study && | |
374 (tags[i] == DICOM_TAG_PATIENT_ID || | |
375 tags[i] == DICOM_TAG_PATIENT_NAME || | |
376 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
377 } | |
378 } | |
379 | |
380 DicomMap::LoadMainDicomTags(tags, size, level); | |
381 | |
382 for (size_t i = 0; i < size; i++) | |
383 { | |
384 if (registry_.find(tags[i]) == registry_.end()) | |
385 { | |
386 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
387 } | |
388 } | |
389 } | |
390 | |
391 public: | |
392 MainDicomTagsRegistry() | |
393 { | |
394 LoadTags(ResourceType_Patient); | |
395 LoadTags(ResourceType_Study); | |
396 LoadTags(ResourceType_Series); | |
397 LoadTags(ResourceType_Instance); | |
398 } | |
399 | |
400 void LookupTag(ResourceType& level, | |
401 DicomTagType& type, | |
402 const DicomTag& tag) const | |
403 { | |
404 Registry::const_iterator it = registry_.find(tag); | |
405 | |
406 if (it == registry_.end()) | |
407 { | |
408 // Default values | |
409 level = ResourceType_Instance; | |
410 type = DicomTagType_Generic; | |
411 } | |
412 else | |
413 { | |
414 level = it->second.GetLevel(); | |
415 type = it->second.GetType(); | |
416 } | |
417 } | |
418 }; | |
419 | |
420 | |
212 | 421 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 422 const std::string& uuid, |
202 | 423 ResourceType expectedType) |
0 | 424 { |
206
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425 boost::mutex::scoped_lock lock(mutex_); |
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426 |
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427 Transaction t(*this); |
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428 |
202 | 429 int64_t id; |
430 ResourceType type; | |
1294 | 431 if (!db_.LookupResource(id, type, uuid) || |
202 | 432 expectedType != type) |
0 | 433 { |
434 return false; | |
435 } | |
202 | 436 |
1247 | 437 db_.DeleteResource(id); |
0 | 438 |
202 | 439 if (listener_->HasRemainingLevel()) |
0 | 440 { |
202 | 441 ResourceType type = listener_->GetRemainingType(); |
442 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 443 |
444 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 445 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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446 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 447 target["RemainingAncestor"]["ID"] = uuid; |
448 } | |
449 else | |
450 { | |
451 target["RemainingAncestor"] = Json::nullValue; | |
452 } | |
453 | |
278
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454 t.Commit(0); |
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455 |
0 | 456 return true; |
457 } | |
458 | |
459 | |
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460 void ServerIndex::FlushThread(ServerIndex* that, |
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461 unsigned int threadSleep) |
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462 { |
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463 // By default, wait for 10 seconds before flushing |
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464 unsigned int sleep = 10; |
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465 |
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466 try |
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467 { |
744 | 468 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 469 std::string sleepString; |
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470 |
1247 | 471 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 472 Toolbox::IsInteger(sleepString)) |
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473 { |
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474 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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475 } |
511
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476 } |
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477 catch (boost::bad_lexical_cast&) |
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478 { |
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479 } |
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480 |
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481 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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482 |
511
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483 unsigned int count = 0; |
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484 |
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485 while (!that->done_) |
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486 { |
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487 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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488 count++; |
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489 if (count < sleep) |
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490 { |
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491 continue; |
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492 } |
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493 |
2217 | 494 Logging::Flush(); |
495 | |
511
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496 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 497 that->db_.FlushToDisk(); |
511
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498 count = 0; |
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499 } |
511
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500 |
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501 LOG(INFO) << "Stopping the database flushing thread"; |
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502 } |
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503 |
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504 |
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505 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 506 const DicomMap& dicomSummary) |
507 { | |
508 try | |
509 { | |
656 | 510 const DicomValue* value; |
511 const DicomValue* value2; | |
512 | |
433 | 513 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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514 !value->IsNull() && |
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515 !value->IsBinary() && |
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516 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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517 !value2->IsNull() && |
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518 !value2->IsBinary()) |
433 | 519 { |
520 // Patch for series with temporal positions thanks to Will Ryder | |
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521 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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522 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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523 target = imagesInAcquisition * countTemporalPositions; |
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524 return (target > 0); |
433 | 525 } |
526 | |
527 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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528 !value->IsNull() && |
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529 !value->IsBinary() && |
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530 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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531 !value2->IsBinary() && |
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532 !value2->IsNull()) |
433 | 533 { |
534 // Support of Cardio-PET images | |
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535 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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536 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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537 target = numberOfSlices * numberOfTimeSlices; |
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538 return (target > 0); |
433 | 539 } |
540 | |
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541 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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542 !value->IsNull() && |
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543 !value->IsBinary()) |
433 | 544 { |
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545 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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546 return (target > 0); |
433 | 547 } |
548 } | |
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549 catch (OrthancException&) |
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550 { |
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551 } |
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552 catch (boost::bad_lexical_cast&) |
433 | 553 { |
554 } | |
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555 |
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556 return false; |
433 | 557 } |
558 | |
559 | |
1237 | 560 |
561 | |
1238 | 562 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 563 int64_t id, |
564 MetadataType type) | |
565 { | |
1238 | 566 std::string s; |
1247 | 567 if (!db_.LookupMetadata(s, id, type)) |
1237 | 568 { |
569 return false; | |
570 } | |
571 | |
572 try | |
573 { | |
1238 | 574 result = boost::lexical_cast<int64_t>(s); |
1237 | 575 return true; |
576 } | |
577 catch (boost::bad_lexical_cast&) | |
578 { | |
579 return false; | |
580 } | |
581 } | |
582 | |
583 | |
1297 | 584 void ServerIndex::LogChange(int64_t internalId, |
585 ChangeType changeType, | |
586 ResourceType resourceType, | |
587 const std::string& publicId) | |
588 { | |
589 ServerIndexChange change(changeType, resourceType, publicId); | |
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590 |
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591 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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592 { |
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593 db_.LogChange(internalId, change); |
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594 } |
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595 |
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596 assert(listener_.get() != NULL); |
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597 listener_->SignalChange(change); |
1297 | 598 } |
599 | |
1237 | 600 |
601 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
602 { | |
603 std::string oldValue; | |
604 | |
1247 | 605 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 606 { |
607 uint64_t oldNumber; | |
608 | |
609 try | |
610 { | |
611 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 612 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 613 return oldNumber + 1; |
614 } | |
615 catch (boost::bad_lexical_cast&) | |
616 { | |
617 throw OrthancException(ErrorCode_InternalError); | |
618 } | |
619 } | |
620 else | |
621 { | |
622 // Initialize the sequence at "1" | |
1247 | 623 db_.SetGlobalProperty(property, "1"); |
1237 | 624 return 1; |
625 } | |
626 } | |
627 | |
628 | |
629 | |
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630 ServerIndex::ServerIndex(ServerContext& context, |
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631 IDatabaseWrapper& db, |
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632 unsigned int threadSleep) : |
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633 done_(false), |
1247 | 634 db_(db), |
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635 maximumStorageSize_(0), |
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636 maximumPatients_(0), |
3027 | 637 overwrite_(false), |
638 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
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639 { |
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640 listener_.reset(new Listener(context)); |
1247 | 641 db_.SetListener(*listener_); |
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642 |
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643 // Initial recycling if the parameters have changed since the last |
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644 // execution of Orthanc |
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645 StandaloneRecycling(); |
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646 |
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647 if (db.HasFlushToDisk()) |
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648 { |
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649 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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650 } |
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651 |
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652 unstableResourcesMonitorThread_ = boost::thread |
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653 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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654 } |
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655 |
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656 |
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657 |
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658 ServerIndex::~ServerIndex() |
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659 { |
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660 if (!done_) |
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661 { |
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662 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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663 Stop(); |
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664 } |
0 | 665 } |
666 | |
667 | |
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668 |
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669 void ServerIndex::Stop() |
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670 { |
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671 if (!done_) |
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672 { |
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673 done_ = true; |
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674 |
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675 if (db_.HasFlushToDisk() && |
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676 flushThread_.joinable()) |
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677 { |
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678 flushThread_.join(); |
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679 } |
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680 |
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681 if (unstableResourcesMonitorThread_.joinable()) |
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682 { |
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683 unstableResourcesMonitorThread_.join(); |
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684 } |
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685 } |
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686 } |
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687 |
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688 |
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689 static void SetInstanceMetadata(ResourcesContent& content, |
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690 std::map<MetadataType, std::string>& instanceMetadata, |
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691 int64_t instance, |
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692 MetadataType metadata, |
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693 const std::string& value) |
2188 | 694 { |
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695 content.AddMetadata(instance, metadata, value); |
2188 | 696 instanceMetadata[metadata] = value; |
697 } | |
698 | |
699 | |
3080
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700 void ServerIndex::SignalNewResource(ChangeType changeType, |
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701 ResourceType level, |
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702 const std::string& publicId, |
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703 int64_t internalId) |
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704 { |
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705 ServerIndexChange change(changeType, level, publicId); |
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|
706 db_.LogChange(internalId, change); |
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changeset
|
707 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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changeset
|
708 assert(listener_.get() != NULL); |
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started refactoring of ServerIndex::Store()
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|
709 listener_->SignalChange(change); |
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|
710 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
711 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
712 |
1006
649d47854314
proper handling of metadata in Store
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parents:
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diff
changeset
|
713 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 714 DicomInstanceToStore& instanceToStore, |
715 const Attachments& attachments) | |
0 | 716 { |
206
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717 boost::mutex::scoped_lock lock(mutex_); |
0 | 718 |
1822 | 719 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
720 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
721 | |
3090
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722 int64_t expectedInstances; |
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
723 const bool hasExpectedInstances = |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
724 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
725 |
1006
649d47854314
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diff
changeset
|
726 instanceMetadata.clear(); |
649d47854314
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diff
changeset
|
727 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
728 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
1a75595d8e44
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diff
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|
729 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
1a75595d8e44
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diff
changeset
|
730 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
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|
731 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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732 |
0 | 733 try |
734 { | |
278
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diff
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|
735 Transaction t(*this); |
0 | 736 |
3080
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diff
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|
737 IDatabaseWrapper::CreateInstanceResult status; |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
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|
738 int64_t instanceId; |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
739 |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
740 // Check whether this instance is already stored |
3080
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started refactoring of ServerIndex::Store()
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diff
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|
741 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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new extension for database plugin SDK: createInstance
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diff
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|
742 hashStudy, hashSeries, hashInstance)) |
0 | 743 { |
3082
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|
744 // The instance already exists |
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diff
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|
745 |
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|
746 if (overwrite_) |
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new extension for database plugin SDK: createInstance
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|
747 { |
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|
748 // Overwrite the old instance |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
749 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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new extension for database plugin SDK: createInstance
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diff
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|
750 db_.DeleteResource(instanceId); |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
751 |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
752 // Re-create the instance, now that the old one is removed |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
753 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
754 hashStudy, hashSeries, hashInstance)) |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
755 { |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
756 throw OrthancException(ErrorCode_InternalError); |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
757 } |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
758 } |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
759 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
760 { |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
761 // Do nothing if the instance already exists and overwriting is disabled |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
762 db_.GetAllMetadata(instanceMetadata, instanceId); |
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diff
changeset
|
763 return StoreStatus_AlreadyStored; |
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diff
changeset
|
764 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
765 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
766 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
767 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
768 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
769 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
770 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
771 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
772 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
776 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
777 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
778 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
779 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
780 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 781 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
782 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
783 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
784 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
785 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
786 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
787 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
789 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
790 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
791 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
792 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
793 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
794 // Ensure there is enough room in the storage for the new instance |
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diff
changeset
|
795 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
796 for (Attachments::const_iterator it = attachments.begin(); |
656 | 797 it != attachments.end(); ++it) |
268
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preparing ServerIndex for recycling
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diff
changeset
|
798 { |
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diff
changeset
|
799 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
800 } |
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
801 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
802 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
803 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
804 |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
805 // Attach the files to the newly created instance |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
806 for (Attachments::const_iterator it = attachments.begin(); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
807 it != attachments.end(); ++it) |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
808 { |
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parents:
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diff
changeset
|
809 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
810 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
811 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
812 |
0 | 813 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
814 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
815 |
3086
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diff
changeset
|
816 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
817 |
3083
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
818 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
819 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
820 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
821 { |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
822 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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|
823 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
824 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
825 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
826 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
827 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
828 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
829 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
830 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
831 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
832 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
833 } |
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IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
834 |
3086
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diff
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|
835 |
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parents:
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diff
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|
836 // Attach the user-specified metadata |
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diff
changeset
|
837 |
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diff
changeset
|
838 for (MetadataMap::const_iterator |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
839 it = metadata.begin(); it != metadata.end(); ++it) |
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grouping the setting of metadata
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parents:
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|
840 { |
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grouping the setting of metadata
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parents:
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diff
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|
841 switch (it->first.first) |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
842 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
843 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
844 content.AddMetadata(status.patientId_, it->first.second, it->second); |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
845 break; |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
846 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
847 case ResourceType_Study: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
848 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
849 break; |
74e3e48aa9bd
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parents:
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diff
changeset
|
850 |
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parents:
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diff
changeset
|
851 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
852 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
853 break; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
854 |
74e3e48aa9bd
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parents:
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diff
changeset
|
855 case ResourceType_Instance: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
856 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
857 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
858 break; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
859 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
860 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
861 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
862 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
863 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
864 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
865 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
866 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
867 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
868 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
869 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
870 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
871 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
872 if (status.isNewSeries_ && |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
873 hasExpectedInstances) |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
874 { |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
875 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
876 boost::lexical_cast<std::string>(expectedInstances)); |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
877 } |
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
878 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
3087
diff
changeset
|
879 |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
880 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
881 // reflecting these additions into the input metadata map |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
882 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
883 MetadataType_Instance_ReceptionDate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
884 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
885 instanceToStore.GetOrigin().GetRemoteAetC()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
886 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
887 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
888 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
889 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
890 { |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
891 std::string s; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
892 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
893 if (instanceToStore.LookupTransferSyntax(s)) |
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grouping the setting of metadata
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parents:
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diff
changeset
|
894 { |
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grouping the setting of metadata
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parents:
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diff
changeset
|
895 // New in Orthanc 1.2.0 |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
896 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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grouping the setting of metadata
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parents:
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diff
changeset
|
897 MetadataType_Instance_TransferSyntax, s); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
898 } |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
899 |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
900 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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grouping the setting of metadata
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parents:
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diff
changeset
|
901 { |
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grouping the setting of metadata
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parents:
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diff
changeset
|
902 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
903 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
904 MetadataType_Instance_RemoteIp, s); |
74e3e48aa9bd
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parents:
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diff
changeset
|
905 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
906 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
907 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
908 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
909 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
910 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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grouping the setting of metadata
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parents:
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diff
changeset
|
911 MetadataType_Instance_CalledAet, s); |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
912 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
913 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
914 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
915 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
916 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
917 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
918 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
919 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
920 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
921 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
922 |
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parents:
3083
diff
changeset
|
923 const DicomValue* value; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
924 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
925 !value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
926 !value->IsBinary()) |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
927 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
928 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
929 MetadataType_Instance_SopClassUid, value->GetContent()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
930 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
931 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
932 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
933 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
934 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
935 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
936 if (!value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
937 !value->IsBinary()) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
938 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
939 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
940 MetadataType_Instance_IndexInSeries, value->GetContent()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
941 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
942 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
943 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
944 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
945 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
946 } |
3086
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
947 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
948 |
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
949 // Check whether the series of this new instance is now completed |
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started refactoring of ServerIndex::Store()
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|
950 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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951 if (seriesStatus == SeriesStatus_Complete) |
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952 { |
3080
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started refactoring of ServerIndex::Store()
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|
953 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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954 } |
3087 | 955 |
205
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956 |
511
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monitoring of stable patients/studies/series
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|
957 // Mark the parent resources of this instance as unstable |
3080
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started refactoring of ServerIndex::Store()
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958 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
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959 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
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started refactoring of ServerIndex::Store()
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|
960 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
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961 |
278
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962 t.Commit(instanceSize); |
268
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963 |
0 | 964 return StoreStatus_Success; |
965 } | |
62 | 966 catch (OrthancException& e) |
0 | 967 { |
1247 | 968 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 969 } |
970 | |
971 return StoreStatus_Failure; | |
972 } | |
973 | |
974 | |
3174
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Sebastien Jodogne <s.jodogne@gmail.com>
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975 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize, |
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diff
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|
976 /* out */ uint64_t& uncompressedSize, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
977 /* out */ uint64_t& countPatients, |
8ea7c4546c3a
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|
978 /* out */ uint64_t& countStudies, |
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|
979 /* out */ uint64_t& countSeries, |
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|
980 /* out */ uint64_t& countInstances) |
0 | 981 { |
206
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|
982 boost::mutex::scoped_lock lock(mutex_); |
3174
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|
983 diskSize = db_.GetTotalCompressedSize(); |
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|
984 uncompressedSize = db_.GetTotalUncompressedSize(); |
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|
985 countPatients = db_.GetResourceCount(ResourceType_Patient); |
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|
986 countStudies = db_.GetResourceCount(ResourceType_Study); |
8ea7c4546c3a
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|
987 countSeries = db_.GetResourceCount(ResourceType_Series); |
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|
988 countInstances = db_.GetResourceCount(ResourceType_Instance); |
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|
989 } |
187
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|
990 |
3090
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|
991 |
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changeset
|
992 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
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|
993 int64_t expectedNumberOfInstances) |
199 | 994 { |
3091
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IDatabaseWrapper::GetChildrenMetadata()
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|
995 std::list<std::string> values; |
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IDatabaseWrapper::GetChildrenMetadata()
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|
996 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 997 |
1238 | 998 std::set<int64_t> instances; |
3091
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diff
changeset
|
999 |
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IDatabaseWrapper::GetChildrenMetadata()
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|
1000 for (std::list<std::string>::const_iterator |
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IDatabaseWrapper::GetChildrenMetadata()
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|
1001 it = values.begin(); it != values.end(); ++it) |
199 | 1002 { |
1238 | 1003 int64_t index; |
3091
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changeset
|
1004 |
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IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1005 try |
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IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1006 { |
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IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1007 index = boost::lexical_cast<int64_t>(*it); |
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IDatabaseWrapper::GetChildrenMetadata()
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|
1008 } |
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IDatabaseWrapper::GetChildrenMetadata()
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|
1009 catch (boost::bad_lexical_cast&) |
199 | 1010 { |
1011 return SeriesStatus_Unknown; | |
1012 } | |
3091
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|
1013 |
3090
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|
1014 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1015 { |
1016 // Out-of-range instance index | |
1017 return SeriesStatus_Inconsistent; | |
1018 } | |
1019 | |
1020 if (instances.find(index) != instances.end()) | |
1021 { | |
1022 // Twice the same instance index | |
1023 return SeriesStatus_Inconsistent; | |
1024 } | |
1025 | |
1026 instances.insert(index); | |
1027 } | |
1028 | |
3090
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|
1029 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1030 { |
1031 return SeriesStatus_Complete; | |
1032 } | |
1033 else | |
1034 { | |
1035 return SeriesStatus_Missing; | |
1036 } | |
1037 } | |
1038 | |
1039 | |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1040 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
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|
1041 { |
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1042 // Get the expected number of instances in this series (from the metadata) |
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|
1043 int64_t expected; |
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changeset
|
1044 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1045 { |
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|
1046 return SeriesStatus_Unknown; |
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1047 } |
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|
1048 else |
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|
1049 { |
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|
1050 return GetSeriesStatus(id, expected); |
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|
1051 } |
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|
1052 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1053 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
1054 |
202 | 1055 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1056 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
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|
1057 ResourceType resourceType) |
198
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1058 { |
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1059 DicomMap tags; |
1247 | 1060 db_.GetMainDicomTags(tags, resourceId); |
1676
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1061 |
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diff
changeset
|
1062 if (resourceType == ResourceType_Study) |
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|
1063 { |
f079f3efe33b
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diff
changeset
|
1064 DicomMap t1, t2; |
f079f3efe33b
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diff
changeset
|
1065 tags.ExtractStudyInformation(t1); |
f079f3efe33b
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changeset
|
1066 tags.ExtractPatientInformation(t2); |
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changeset
|
1067 |
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changeset
|
1068 target["MainDicomTags"] = Json::objectValue; |
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changeset
|
1069 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
f079f3efe33b
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diff
changeset
|
1070 |
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changeset
|
1071 target["PatientMainDicomTags"] = Json::objectValue; |
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changeset
|
1072 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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diff
changeset
|
1073 } |
f079f3efe33b
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diff
changeset
|
1074 else |
f079f3efe33b
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diff
changeset
|
1075 { |
f079f3efe33b
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diff
changeset
|
1076 target["MainDicomTags"] = Json::objectValue; |
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diff
changeset
|
1077 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1078 } |
198
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1079 } |
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1080 |
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1081 |
198
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|
1082 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1083 const std::string& publicId, |
1084 ResourceType expectedType) | |
198
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1085 { |
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1086 result = Json::objectValue; |
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1087 |
206
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|
1088 boost::mutex::scoped_lock lock(mutex_); |
199 | 1089 |
198
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1090 // Lookup for the requested resource |
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1091 int64_t id; |
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|
1092 ResourceType type; |
1294 | 1093 if (!db_.LookupResource(id, type, publicId) || |
199 | 1094 type != expectedType) |
198
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1095 { |
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1096 return false; |
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1097 } |
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1098 |
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1099 // Find the parent resource (if it exists) |
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1100 if (type != ResourceType_Patient) |
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1101 { |
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|
1102 int64_t parentId; |
1247 | 1103 if (!db_.LookupParent(parentId, id)) |
198
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1104 { |
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1105 throw OrthancException(ErrorCode_InternalError); |
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1106 } |
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1107 |
1247 | 1108 std::string parent = db_.GetPublicId(parentId); |
198
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1109 |
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|
1110 switch (type) |
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1111 { |
269
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|
1112 case ResourceType_Study: |
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1113 result["ParentPatient"] = parent; |
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|
1114 break; |
198
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1115 |
269
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1116 case ResourceType_Series: |
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1117 result["ParentStudy"] = parent; |
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|
1118 break; |
198
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1119 |
269
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1120 case ResourceType_Instance: |
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1121 result["ParentSeries"] = parent; |
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1122 break; |
198
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1123 |
269
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1124 default: |
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|
1125 throw OrthancException(ErrorCode_InternalError); |
198
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|
1126 } |
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1127 } |
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1128 |
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1129 // List the children resources |
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|
1130 std::list<std::string> children; |
1247 | 1131 db_.GetChildrenPublicId(children, id); |
198
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|
1132 |
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|
1133 if (type != ResourceType_Instance) |
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1134 { |
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|
1135 Json::Value c = Json::arrayValue; |
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|
1136 |
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|
1137 for (std::list<std::string>::const_iterator |
656 | 1138 it = children.begin(); it != children.end(); ++it) |
198
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|
1139 { |
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|
1140 c.append(*it); |
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1141 } |
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|
1142 |
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|
1143 switch (type) |
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|
1144 { |
269
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|
1145 case ResourceType_Patient: |
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|
1146 result["Studies"] = c; |
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diff
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|
1147 break; |
198
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|
1148 |
269
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diff
changeset
|
1149 case ResourceType_Study: |
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|
1150 result["Series"] = c; |
f6fdf5abe751
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diff
changeset
|
1151 break; |
198
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diff
changeset
|
1152 |
269
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diff
changeset
|
1153 case ResourceType_Series: |
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diff
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|
1154 result["Instances"] = c; |
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diff
changeset
|
1155 break; |
198
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diff
changeset
|
1156 |
269
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diff
changeset
|
1157 default: |
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|
1158 throw OrthancException(ErrorCode_InternalError); |
198
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|
1159 } |
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|
1160 } |
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|
1161 |
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|
1162 // Set the resource type |
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|
1163 switch (type) |
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diff
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|
1164 { |
269
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diff
changeset
|
1165 case ResourceType_Patient: |
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|
1166 result["Type"] = "Patient"; |
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268
diff
changeset
|
1167 break; |
198
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diff
changeset
|
1168 |
269
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diff
changeset
|
1169 case ResourceType_Study: |
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diff
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|
1170 result["Type"] = "Study"; |
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diff
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|
1171 break; |
199 | 1172 |
269
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diff
changeset
|
1173 case ResourceType_Series: |
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|
1174 { |
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diff
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|
1175 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1176 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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|
1177 |
1238 | 1178 int64_t i; |
1237 | 1179 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1180 { |
1238 | 1181 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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|
1182 } |
269
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diff
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|
1183 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1184 { |
269
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diff
changeset
|
1185 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1186 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1187 |
269
f6fdf5abe751
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268
diff
changeset
|
1188 break; |
200
9c58b2b03cf0
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199
diff
changeset
|
1189 } |
9c58b2b03cf0
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199
diff
changeset
|
1190 |
269
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changeset
|
1191 case ResourceType_Instance: |
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|
1192 { |
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|
1193 result["Type"] = "Instance"; |
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|
1194 |
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|
1195 FileInfo attachment; |
1247 | 1196 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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|
1197 { |
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|
1198 throw OrthancException(ErrorCode_InternalError); |
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1199 } |
200
9c58b2b03cf0
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|
1200 |
269
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|
1201 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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|
1202 result["FileUuid"] = attachment.GetUuid(); |
200
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diff
changeset
|
1203 |
1238 | 1204 int64_t i; |
1237 | 1205 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
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3090
diff
changeset
|
1206 { |
1238 | 1207 result["IndexInSeries"] = static_cast<int>(i); |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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|
1208 } |
269
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|
1209 else |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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|
1210 { |
269
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changeset
|
1211 result["IndexInSeries"] = Json::nullValue; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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|
1212 } |
198
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1213 |
269
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changeset
|
1214 break; |
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|
1215 } |
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|
1216 |
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changeset
|
1217 default: |
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changeset
|
1218 throw OrthancException(ErrorCode_InternalError); |
198
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|
1219 } |
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1220 |
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|
1221 // Record the remaining information |
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diff
changeset
|
1222 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1223 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
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|
1224 |
315 | 1225 std::string tmp; |
1226 | |
1247 | 1227 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1228 { |
315 | 1229 result["AnonymizedFrom"] = tmp; |
1236 | 1230 } |
315 | 1231 |
1247 | 1232 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1233 { |
315 | 1234 result["ModifiedFrom"] = tmp; |
1236 | 1235 } |
315 | 1236 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1237 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1238 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1239 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1240 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1241 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
1242 |
1247 | 1243 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1244 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1245 result["LastUpdate"] = tmp; |
1236 | 1246 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1247 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1248 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
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|
1249 return true; |
663cc6c46d0a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1250 } |
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before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1251 |
0 | 1252 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1253 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1254 const std::string& instanceUuid, |
233 | 1255 FileContentType contentType) |
0 | 1256 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
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205
diff
changeset
|
1257 boost::mutex::scoped_lock lock(mutex_); |
0 | 1258 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
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192
diff
changeset
|
1259 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
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192
diff
changeset
|
1260 ResourceType type; |
1294 | 1261 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
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|
1262 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1263 throw OrthancException(ErrorCode_UnknownResource); |
192
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Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
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|
1264 } |
193
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failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
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192
diff
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|
1265 |
1247 | 1266 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
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|
1267 { |
233 | 1268 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1269 return true; |
5368bbe813cf
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parents:
231
diff
changeset
|
1270 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
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|
1271 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1272 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1273 return false; |
5368bbe813cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1274 } |
192
c56dc32266e0
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Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
changeset
|
1275 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
changeset
|
1276 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
changeset
|
1277 |
c56dc32266e0
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191
diff
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|
1278 |
1354 | 1279 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1280 ResourceType resourceType) |
0 | 1281 { |
1357 | 1282 boost::mutex::scoped_lock lock(mutex_); |
1283 db_.GetAllPublicIds(target, resourceType); | |
0 | 1284 } |
1285 | |
1286 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1287 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1288 ResourceType resourceType, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1289 size_t since, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1290 size_t limit) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1291 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1292 if (limit == 0) |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1293 { |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1294 target.clear(); |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1295 return; |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1296 } |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1297 |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1298 boost::mutex::scoped_lock lock(mutex_); |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1299 db_.GetAllPublicIds(target, resourceType, since, limit); |
0586ed8897f1
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diff
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|
1300 } |
0586ed8897f1
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diff
changeset
|
1301 |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1302 |
1244 | 1303 template <typename T> |
1304 static void FormatLog(Json::Value& target, | |
1305 const std::list<T>& log, | |
1306 const std::string& name, | |
1307 bool done, | |
3105
2e1711f80f74
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1308 int64_t since, |
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1309 bool hasLast, |
2e1711f80f74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
1310 int64_t last) |
1240 | 1311 { |
1312 Json::Value items = Json::arrayValue; | |
1244 | 1313 for (typename std::list<T>::const_iterator |
1304 | 1314 it = log.begin(); it != log.end(); ++it) |
1240 | 1315 { |
1316 Json::Value item; | |
1317 it->Format(item); | |
1318 items.append(item); | |
1319 } | |
1320 | |
1321 target = Json::objectValue; | |
1244 | 1322 target[name] = items; |
1240 | 1323 target["Done"] = done; |
1324 | |
3105
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diff
changeset
|
1325 if (!hasLast) |
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changeset
|
1326 { |
2e1711f80f74
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1327 // Best-effort guess of the last index in the sequence |
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1328 if (log.empty()) |
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1329 { |
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More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1330 last = since; |
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|
1331 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1332 else |
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|
1333 { |
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changeset
|
1334 last = log.back().GetSeq(); |
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|
1335 } |
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|
1336 } |
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diff
changeset
|
1337 |
1240 | 1338 target["Last"] = static_cast<int>(last); |
1339 } | |
1340 | |
1341 | |
1247 | 1342 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1343 int64_t since, |
0 | 1344 unsigned int maxResults) |
1345 { | |
1240 | 1346 std::list<ServerIndexChange> changes; |
1347 bool done; | |
3105
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changeset
|
1348 bool hasLast = false; |
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diff
changeset
|
1349 int64_t last = 0; |
1240 | 1350 |
1351 { | |
1352 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1353 |
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changeset
|
1354 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1355 // "GetLastChange()" involves calls to "GetPublicId()" |
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fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1356 Transaction transaction(*this); |
3105
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diff
changeset
|
1357 |
1247 | 1358 db_.GetChanges(changes, done, since, maxResults); |
3105
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changeset
|
1359 if (changes.empty()) |
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changeset
|
1360 { |
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|
1361 last = db_.GetLastChangeIndex(); |
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changeset
|
1362 hasLast = true; |
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changeset
|
1363 } |
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|
1364 |
2717
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changeset
|
1365 transaction.Commit(0); |
1240 | 1366 } |
1367 | |
3105
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changeset
|
1368 FormatLog(target, changes, "Changes", done, since, hasLast, last); |
237
16a4ac70bd8a
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diff
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|
1369 } |
0 | 1370 |
1240 | 1371 |
1247 | 1372 void ServerIndex::GetLastChange(Json::Value& target) |
237
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diff
changeset
|
1373 { |
1240 | 1374 std::list<ServerIndexChange> changes; |
3105
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changeset
|
1375 bool hasLast = false; |
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changeset
|
1376 int64_t last = 0; |
1240 | 1377 |
1378 { | |
1379 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1380 |
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changeset
|
1381 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1382 // "GetLastChange()" involves calls to "GetPublicId()" |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1383 Transaction transaction(*this); |
3105
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changeset
|
1384 |
1247 | 1385 db_.GetLastChange(changes); |
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changeset
|
1386 if (changes.empty()) |
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|
1387 { |
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|
1388 last = db_.GetLastChangeIndex(); |
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|
1389 hasLast = true; |
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1390 } |
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|
1391 |
2717
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changeset
|
1392 transaction.Commit(0); |
1240 | 1393 } |
1394 | |
3105
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changeset
|
1395 FormatLog(target, changes, "Changes", true, 0, hasLast, last); |
0 | 1396 } |
231 | 1397 |
1240 | 1398 |
231 | 1399 void ServerIndex::LogExportedResource(const std::string& publicId, |
1400 const std::string& remoteModality) | |
1401 { | |
1402 boost::mutex::scoped_lock lock(mutex_); | |
1310
61ce8147f30d
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1306
diff
changeset
|
1403 Transaction transaction(*this); |
231 | 1404 |
1405 int64_t id; | |
1406 ResourceType type; | |
1294 | 1407 if (!db_.LookupResource(id, type, publicId)) |
231 | 1408 { |
2573
3372c5255333
StoreScuJob, Orthanc Explorer for jobs
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diff
changeset
|
1409 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1410 } |
1411 | |
1412 std::string patientId; | |
1413 std::string studyInstanceUid; | |
1414 std::string seriesInstanceUid; | |
1415 std::string sopInstanceUid; | |
1416 | |
1417 int64_t currentId = id; | |
1418 ResourceType currentType = type; | |
1419 | |
1420 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1421 bool done = false; | |
1422 while (!done) | |
1423 { | |
1424 DicomMap map; | |
1247 | 1425 db_.GetMainDicomTags(map, currentId); |
231 | 1426 |
1427 switch (currentType) | |
1428 { | |
269
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diff
changeset
|
1429 case ResourceType_Patient: |
2090
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diff
changeset
|
1430 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
1824a02e0951
improved robustness for files with no PatientID
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|
1431 { |
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|
1432 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1433 } |
269
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1434 done = true; |
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1435 break; |
231 | 1436 |
269
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1437 case ResourceType_Study: |
2090
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1438 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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|
1439 { |
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diff
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|
1440 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1441 } |
269
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1442 currentType = ResourceType_Patient; |
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1443 break; |
231 | 1444 |
269
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1445 case ResourceType_Series: |
2090
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|
1446 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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|
1447 { |
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improved robustness for files with no PatientID
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|
1448 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1449 } |
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1450 currentType = ResourceType_Study; |
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1451 break; |
231 | 1452 |
269
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1453 case ResourceType_Instance: |
2090
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|
1454 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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|
1455 { |
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|
1456 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1457 } |
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1458 currentType = ResourceType_Series; |
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1459 break; |
231 | 1460 |
269
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1461 default: |
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1462 throw OrthancException(ErrorCode_InternalError); |
231 | 1463 } |
1464 | |
1465 // If we have not reached the Patient level, find the parent of | |
1466 // the current resource | |
1467 if (!done) | |
1468 { | |
1247 | 1469 bool ok = db_.LookupParent(currentId, currentId); |
375
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1470 assert(ok); |
231 | 1471 } |
1472 } | |
1473 | |
1246 | 1474 ExportedResource resource(-1, |
1475 type, | |
1476 publicId, | |
1477 remoteModality, | |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
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diff
changeset
|
1478 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1479 patientId, |
1480 studyInstanceUid, | |
1481 seriesInstanceUid, | |
1482 sopInstanceUid); | |
1310
61ce8147f30d
custom database back-end
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diff
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|
1483 |
1247 | 1484 db_.LogExportedResource(resource); |
1310
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|
1485 transaction.Commit(0); |
231 | 1486 } |
1487 | |
1488 | |
1247 | 1489 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1490 int64_t since, |
1491 unsigned int maxResults) | |
1492 { | |
1244 | 1493 std::list<ExportedResource> exported; |
1494 bool done; | |
1495 | |
1496 { | |
1497 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1498 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1499 } |
1500 | |
3105
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1501 FormatLog(target, exported, "Exports", done, since, false, -1); |
231 | 1502 } |
237
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1503 |
1244 | 1504 |
1247 | 1505 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1506 { |
1244 | 1507 std::list<ExportedResource> exported; |
1508 | |
1509 { | |
1510 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1511 db_.GetLastExportedResource(exported); |
1244 | 1512 } |
1513 | |
3105
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1514 FormatLog(target, exported, "Exports", true, 0, false, -1); |
237
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1515 } |
268
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1516 |
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1517 |
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1518 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1519 { |
269
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1520 if (maximumStorageSize_ != 0) |
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|
1521 { |
3020
d207f6ac1f86
tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3019
diff
changeset
|
1522 assert(maximumStorageSize_ >= instanceSize); |
d207f6ac1f86
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Sebastien Jodogne <s.jodogne@gmail.com>
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3019
diff
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|
1523 |
d207f6ac1f86
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1524 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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|
1525 { |
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|
1526 return true; |
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|
1527 } |
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|
1528 } |
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1529 |
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1530 if (maximumPatients_ != 0) |
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1531 { |
1247 | 1532 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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|
1533 if (patientCount > maximumPatients_) |
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|
1534 { |
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|
1535 return true; |
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|
1536 } |
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|
1537 } |
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|
1538 |
268
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|
1539 return false; |
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|
1540 } |
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|
1541 |
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|
1542 |
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|
1543 void ServerIndex::Recycle(uint64_t instanceSize, |
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|
1544 const std::string& newPatientId) |
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|
1545 { |
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|
1546 if (!IsRecyclingNeeded(instanceSize)) |
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|
1547 { |
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|
1548 return; |
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|
1549 } |
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|
1550 |
269
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|
1551 // Check whether other DICOM instances from this patient are |
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|
1552 // already stored |
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|
1553 int64_t patientToAvoid; |
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|
1554 ResourceType type; |
1294 | 1555 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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|
1556 |
269
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|
1557 if (hasPatientToAvoid && type != ResourceType_Patient) |
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|
1558 { |
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|
1559 throw OrthancException(ErrorCode_InternalError); |
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|
1560 } |
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|
1561 |
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1562 // Iteratively select patient to remove until there is enough |
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1563 // space in the DICOM store |
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|
1564 int64_t patientToRecycle; |
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|
1565 while (true) |
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|
1566 { |
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1567 // If other instances of this patient are already in the store, |
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|
1568 // we must avoid to recycle them |
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|
1569 bool ok = hasPatientToAvoid ? |
1247 | 1570 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1571 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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|
1572 |
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1573 if (!ok) |
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|
1574 { |
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|
1575 throw OrthancException(ErrorCode_FullStorage); |
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1576 } |
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1577 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
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diff
changeset
|
1578 VLOG(1) << "Recycling one patient"; |
1247 | 1579 db_.DeleteResource(patientToRecycle); |
269
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|
1580 |
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1581 if (!IsRecyclingNeeded(instanceSize)) |
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|
1582 { |
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|
1583 // OK, we're done |
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1584 break; |
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|
1585 } |
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|
1586 } |
268
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|
1587 } |
269
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|
1588 |
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|
1589 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1590 { |
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|
1591 boost::mutex::scoped_lock lock(mutex_); |
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|
1592 maximumPatients_ = count; |
270
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1593 |
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1594 if (count == 0) |
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1595 { |
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1596 LOG(WARNING) << "No limit on the number of stored patients"; |
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1597 } |
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1598 else |
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1599 { |
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1600 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1601 } |
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1602 |
269
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1603 StandaloneRecycling(); |
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1604 } |
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1605 |
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1606 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1607 { |
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1608 boost::mutex::scoped_lock lock(mutex_); |
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1609 maximumStorageSize_ = size; |
270
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1610 |
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1611 if (size == 0) |
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1612 { |
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1613 LOG(WARNING) << "No limit on the size of the storage area"; |
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1614 } |
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1615 else |
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1616 { |
440
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1617 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1618 } |
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1619 |
269
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1620 StandaloneRecycling(); |
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1621 } |
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1622 |
2825
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1623 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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1624 { |
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1625 boost::mutex::scoped_lock lock(mutex_); |
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1626 overwrite_ = overwrite; |
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1627 } |
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|
1628 |
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1629 |
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1630 void ServerIndex::StandaloneRecycling() |
269
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1631 { |
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1632 // WARNING: No mutex here, do not include this as a public method |
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1633 Transaction t(*this); |
269
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1634 Recycle(0, ""); |
278
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1635 t.Commit(0); |
269
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1636 } |
272
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1637 |
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1638 |
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1639 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1640 { |
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1641 boost::mutex::scoped_lock lock(mutex_); |
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1642 |
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1643 // Lookup for the requested resource |
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1644 int64_t id; |
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1645 ResourceType type; |
1294 | 1646 if (!db_.LookupResource(id, type, publicId) || |
272
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1647 type != ResourceType_Patient) |
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1648 { |
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1649 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1650 } |
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1651 |
1247 | 1652 return db_.IsProtectedPatient(id); |
272
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1653 } |
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1654 |
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1655 |
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1656 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1657 bool isProtected) |
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1658 { |
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1659 boost::mutex::scoped_lock lock(mutex_); |
1310
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1660 Transaction transaction(*this); |
272
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1661 |
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1662 // Lookup for the requested resource |
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1663 int64_t id; |
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1664 ResourceType type; |
1294 | 1665 if (!db_.LookupResource(id, type, publicId) || |
272
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1666 type != ResourceType_Patient) |
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1667 { |
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1668 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1669 } |
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1670 |
1247 | 1671 db_.SetProtectedPatient(id, isProtected); |
1310
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1672 transaction.Commit(0); |
272
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1673 |
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1674 if (isProtected) |
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1675 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1676 else |
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1677 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1678 } |
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1679 |
304 | 1680 |
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1681 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1682 const std::string& publicId) |
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1683 { |
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1684 result.clear(); |
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1685 |
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1686 boost::mutex::scoped_lock lock(mutex_); |
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1687 |
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1688 ResourceType type; |
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1689 int64_t resource; |
1294 | 1690 if (!db_.LookupResource(resource, type, publicId)) |
714
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1691 { |
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1692 throw OrthancException(ErrorCode_UnknownResource); |
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1693 } |
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1694 |
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1695 if (type == ResourceType_Instance) |
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1696 { |
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1697 // An instance cannot have a child |
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1698 throw OrthancException(ErrorCode_BadParameterType); |
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1699 } |
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1700 |
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1701 std::list<int64_t> tmp; |
1247 | 1702 db_.GetChildrenInternalId(tmp, resource); |
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1703 |
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1704 for (std::list<int64_t>::const_iterator |
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1705 it = tmp.begin(); it != tmp.end(); ++it) |
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1706 { |
1247 | 1707 result.push_back(db_.GetPublicId(*it)); |
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1708 } |
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1709 } |
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1710 |
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1711 |
304 | 1712 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1713 const std::string& publicId) | |
1714 { | |
1715 result.clear(); | |
1716 | |
1717 boost::mutex::scoped_lock lock(mutex_); | |
1718 | |
1719 ResourceType type; | |
1720 int64_t top; | |
1294 | 1721 if (!db_.LookupResource(top, type, publicId)) |
304 | 1722 { |
1723 throw OrthancException(ErrorCode_UnknownResource); | |
1724 } | |
1725 | |
1726 if (type == ResourceType_Instance) | |
1727 { | |
1728 // The resource is already an instance: Do not go down the hierarchy | |
1729 result.push_back(publicId); | |
1730 return; | |
1731 } | |
1732 | |
1733 std::stack<int64_t> toExplore; | |
1734 toExplore.push(top); | |
1735 | |
1736 std::list<int64_t> tmp; | |
1737 | |
1738 while (!toExplore.empty()) | |
1739 { | |
1740 // Get the internal ID of the current resource | |
1741 int64_t resource = toExplore.top(); | |
1742 toExplore.pop(); | |
1743 | |
1247 | 1744 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1745 { |
1247 | 1746 result.push_back(db_.GetPublicId(resource)); |
304 | 1747 } |
1748 else | |
1749 { | |
1750 // Tag all the children of this resource as to be explored | |
1247 | 1751 db_.GetChildrenInternalId(tmp, resource); |
304 | 1752 for (std::list<int64_t>::const_iterator |
656 | 1753 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1754 { |
1755 toExplore.push(*it); | |
1756 } | |
1757 } | |
1758 } | |
1759 } | |
1760 | |
306
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1761 |
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1762 void ServerIndex::SetMetadata(const std::string& publicId, |
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1763 MetadataType type, |
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1764 const std::string& value) |
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1765 { |
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1766 boost::mutex::scoped_lock lock(mutex_); |
1773
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1767 Transaction t(*this); |
306
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1768 |
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1769 ResourceType rtype; |
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1770 int64_t id; |
1294 | 1771 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1772 { |
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1773 throw OrthancException(ErrorCode_UnknownResource); |
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1774 } |
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1775 |
1247 | 1776 db_.SetMetadata(id, type, value); |
1773
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1777 |
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1778 if (IsUserMetadata(type)) |
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1779 { |
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1780 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1781 } |
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1782 |
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1783 t.Commit(0); |
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1784 } |
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1785 |
438 | 1786 |
1787 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1788 MetadataType type) | |
1789 { | |
1790 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1791 Transaction t(*this); |
438 | 1792 |
1793 ResourceType rtype; | |
1794 int64_t id; | |
1294 | 1795 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1796 { |
1797 throw OrthancException(ErrorCode_UnknownResource); | |
1798 } | |
1799 | |
1247 | 1800 db_.DeleteMetadata(id, type); |
1773
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1801 |
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1802 if (IsUserMetadata(type)) |
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1803 { |
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1804 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1805 } |
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1806 |
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1807 t.Commit(0); |
438 | 1808 } |
1809 | |
1810 | |
306
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1811 bool ServerIndex::LookupMetadata(std::string& target, |
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1812 const std::string& publicId, |
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1813 MetadataType type) |
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1814 { |
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1815 boost::mutex::scoped_lock lock(mutex_); |
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1816 |
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1817 ResourceType rtype; |
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1818 int64_t id; |
1294 | 1819 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1820 { |
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1821 throw OrthancException(ErrorCode_UnknownResource); |
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1822 } |
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1823 |
1247 | 1824 return db_.LookupMetadata(target, id, type); |
306
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1825 } |
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1826 |
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1827 |
739 | 1828 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
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1829 const std::string& publicId) |
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1830 { |
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1831 boost::mutex::scoped_lock lock(mutex_); |
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1832 |
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1833 ResourceType rtype; |
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1834 int64_t id; |
1294 | 1835 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1836 { |
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1837 throw OrthancException(ErrorCode_UnknownResource); |
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1838 } |
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1839 |
1247 | 1840 db_.ListAvailableMetadata(target, id); |
436
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1841 } |
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1842 |
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1843 |
697
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1844 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1845 const std::string& publicId, |
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1846 ResourceType expectedType) |
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1847 { |
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1848 boost::mutex::scoped_lock lock(mutex_); |
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1849 |
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1850 ResourceType type; |
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1851 int64_t id; |
1294 | 1852 if (!db_.LookupResource(id, type, publicId) || |
697
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1853 expectedType != type) |
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1854 { |
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1855 throw OrthancException(ErrorCode_UnknownResource); |
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1856 } |
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1857 |
1247 | 1858 db_.ListAvailableAttachments(target, id); |
697
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1859 } |
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1860 |
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1861 |
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1862 bool ServerIndex::LookupParent(std::string& target, |
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1863 const std::string& publicId) |
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1864 { |
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1865 boost::mutex::scoped_lock lock(mutex_); |
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1866 |
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1867 ResourceType type; |
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1868 int64_t id; |
1294 | 1869 if (!db_.LookupResource(id, type, publicId)) |
306
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1870 { |
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1871 throw OrthancException(ErrorCode_UnknownResource); |
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1872 } |
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1873 |
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1874 int64_t parentId; |
1247 | 1875 if (db_.LookupParent(parentId, id)) |
306
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1876 { |
1247 | 1877 target = db_.GetPublicId(parentId); |
306
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1878 return true; |
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1879 } |
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1880 else |
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1881 { |
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1882 return false; |
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1883 } |
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1884 } |
310 | 1885 |
1886 | |
1887 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1888 { | |
1889 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1890 Transaction transaction(*this); |
311 | 1891 |
1237 | 1892 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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1893 transaction.Commit(0); |
311 | 1894 |
1895 return seq; | |
310 | 1896 } |
315 | 1897 |
1898 | |
1899 | |
1900 void ServerIndex::LogChange(ChangeType changeType, | |
1901 const std::string& publicId) | |
1902 { | |
1903 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1904 Transaction transaction(*this); |
315 | 1905 |
1906 int64_t id; | |
1907 ResourceType type; | |
1294 | 1908 if (!db_.LookupResource(id, type, publicId)) |
315 | 1909 { |
1910 throw OrthancException(ErrorCode_UnknownResource); | |
1911 } | |
1912 | |
1237 | 1913 LogChange(id, changeType, type, publicId); |
1310
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1914 transaction.Commit(0); |
315 | 1915 } |
413
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1916 |
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1917 |
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1918 void ServerIndex::DeleteChanges() |
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1919 { |
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1920 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1921 db_.ClearChanges(); |
413
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1922 } |
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1923 |
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1924 void ServerIndex::DeleteExportedResources() |
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1925 { |
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1926 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1927 db_.ClearExportedResources(); |
413
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1928 } |
440
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1929 |
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1930 |
3174
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1931 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type, |
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1932 /* out */ uint64_t& diskSize, |
646 | 1933 /* out */ uint64_t& uncompressedSize, |
1934 /* out */ unsigned int& countStudies, | |
1935 /* out */ unsigned int& countSeries, | |
1936 /* out */ unsigned int& countInstances, | |
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1937 /* out */ uint64_t& dicomDiskSize, |
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1938 /* out */ uint64_t& dicomUncompressedSize, |
3174
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1939 const std::string& publicId) |
440
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1940 { |
3174
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1941 boost::mutex::scoped_lock lock(mutex_); |
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1942 |
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1943 int64_t top; |
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1944 if (!db_.LookupResource(top, type, publicId)) |
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1945 { |
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1946 throw OrthancException(ErrorCode_UnknownResource); |
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1947 } |
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1948 |
646 | 1949 std::stack<int64_t> toExplore; |
3174
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1950 toExplore.push(top); |
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1951 |
646 | 1952 countInstances = 0; |
1953 countSeries = 0; | |
1954 countStudies = 0; | |
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1955 diskSize = 0; |
646 | 1956 uncompressedSize = 0; |
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1957 dicomDiskSize = 0; |
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1958 dicomUncompressedSize = 0; |
440
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1959 |
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1960 while (!toExplore.empty()) |
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1961 { |
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1962 // Get the internal ID of the current resource |
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1963 int64_t resource = toExplore.top(); |
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1964 toExplore.pop(); |
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1965 |
1247 | 1966 ResourceType thisType = db_.GetResourceType(resource); |
440
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1967 |
702
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1968 std::list<FileContentType> f; |
1247 | 1969 db_.ListAvailableAttachments(f, resource); |
702
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1970 |
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1971 for (std::list<FileContentType>::const_iterator |
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1972 it = f.begin(); it != f.end(); ++it) |
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1973 { |
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1974 FileInfo attachment; |
1247 | 1975 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1976 { |
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1977 if (attachment.GetContentType() == FileContentType_Dicom) |
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1978 { |
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|
1979 dicomDiskSize += attachment.GetCompressedSize(); |
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1980 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1981 } |
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1982 |
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|
1983 diskSize += attachment.GetCompressedSize(); |
702
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1984 uncompressedSize += attachment.GetUncompressedSize(); |
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1985 } |
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|
1986 } |
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|
1987 |
440
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1988 if (thisType == ResourceType_Instance) |
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1989 { |
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1990 countInstances++; |
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1991 } |
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1992 else |
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|
1993 { |
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1994 switch (thisType) |
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1995 { |
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|
1996 case ResourceType_Study: |
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1997 countStudies++; |
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1998 break; |
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1999 |
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|
2000 case ResourceType_Series: |
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2001 countSeries++; |
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|
2002 break; |
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|
2003 |
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|
2004 default: |
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|
2005 break; |
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changeset
|
2006 } |
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|
2007 |
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|
2008 // Tag all the children of this resource as to be explored |
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|
2009 std::list<int64_t> tmp; |
1247 | 2010 db_.GetChildrenInternalId(tmp, resource); |
440
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|
2011 for (std::list<int64_t>::const_iterator |
656 | 2012 it = tmp.begin(); it != tmp.end(); ++it) |
440
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changeset
|
2013 { |
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changeset
|
2014 toExplore.push(*it); |
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changeset
|
2015 } |
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diff
changeset
|
2016 } |
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|
2017 } |
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|
2018 |
646 | 2019 if (countStudies == 0) |
2020 { | |
2021 countStudies = 1; | |
2022 } | |
2023 | |
2024 if (countSeries == 0) | |
2025 { | |
2026 countSeries = 1; | |
2027 } | |
2028 } | |
2029 | |
2030 | |
2665
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|
2031 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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|
2032 unsigned int threadSleep) |
511
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changeset
|
2033 { |
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|
2034 int stableAge; |
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|
2035 |
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changeset
|
2036 { |
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changeset
|
2037 OrthancConfiguration::ReaderLock lock; |
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|
2038 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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changeset
|
2039 } |
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changeset
|
2040 |
511
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2041 if (stableAge <= 0) |
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2042 { |
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|
2043 stableAge = 60; |
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2044 } |
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|
2045 |
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|
2046 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2047 |
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changeset
|
2048 while (!that->done_) |
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|
2049 { |
2665
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changeset
|
2050 // Check for stable resources each few seconds |
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changeset
|
2051 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2052 |
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|
2053 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2054 |
511
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2055 while (!that->unstableResources_.IsEmpty() && |
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2056 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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|
2057 { |
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changeset
|
2058 // This DICOM resource has not received any new instance for |
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|
2059 // some time. It can be considered as stable. |
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|
2060 |
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changeset
|
2061 UnstableResourcePayload payload; |
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diff
changeset
|
2062 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2063 |
513 | 2064 // Ensure that the resource is still existing before logging the change |
1247 | 2065 if (that->db_.IsExistingResource(id)) |
511
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2066 { |
1177
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|
2067 switch (payload.GetResourceType()) |
513 | 2068 { |
1177
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Plugins can monitor changes through callbacks
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2069 case ResourceType_Patient: |
1237 | 2070 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2071 break; |
511
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2072 |
1177
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|
2073 case ResourceType_Study: |
1237 | 2074 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2075 break; |
511
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|
2076 |
1177
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|
2077 case ResourceType_Series: |
1237 | 2078 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2079 break; |
2080 | |
2081 default: | |
2082 throw OrthancException(ErrorCode_InternalError); | |
2083 } | |
2084 | |
2085 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2086 } |
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|
2087 } |
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2088 } |
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changeset
|
2089 |
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changeset
|
2090 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2091 } |
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changeset
|
2092 |
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|
2093 |
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|
2094 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2095 Orthanc::ResourceType type, |
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|
2096 const std::string& publicId) |
511
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2097 { |
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|
2098 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
2099 |
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2100 assert(type == Orthanc::ResourceType_Patient || |
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|
2101 type == Orthanc::ResourceType_Study || |
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|
2102 type == Orthanc::ResourceType_Series); |
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2103 |
1177
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|
2104 UnstableResourcePayload payload(type, publicId); |
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|
2105 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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|
2106 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
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diff
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|
2107 |
1237 | 2108 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2109 } |
521 | 2110 |
2111 | |
2112 | |
3034
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diff
changeset
|
2113 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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1727
diff
changeset
|
2114 ResourceType level, |
4941494b5dd8
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diff
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|
2115 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2116 const std::string& value) |
615 | 2117 { |
1727 | 2118 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2119 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2120 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2121 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2122 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2123 |
615 | 2124 result.clear(); |
2125 | |
3034
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|
2126 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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changeset
|
2127 |
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changeset
|
2128 std::vector<DatabaseConstraint> query; |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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3061
diff
changeset
|
2129 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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|
2130 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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3073
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changeset
|
2131 std::list<std::string> tmp; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
changeset
|
2132 |
3034
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changeset
|
2133 { |
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changeset
|
2134 boost::mutex::scoped_lock lock(mutex_); |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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3073
diff
changeset
|
2135 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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changeset
|
2136 } |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
changeset
|
2137 |
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3073
diff
changeset
|
2138 CopyListToVector(result, tmp); |
615 | 2139 } |
2140 | |
2141 | |
699
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changeset
|
2142 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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changeset
|
2143 const std::string& publicId) |
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|
2144 { |
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changeset
|
2145 boost::mutex::scoped_lock lock(mutex_); |
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|
2146 |
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changeset
|
2147 Transaction t(*this); |
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|
2148 |
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diff
changeset
|
2149 ResourceType resourceType; |
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diff
changeset
|
2150 int64_t resourceId; |
1294 | 2151 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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changeset
|
2152 { |
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changeset
|
2153 return StoreStatus_Failure; // Inexistent resource |
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|
2154 } |
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|
2155 |
704
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diff
changeset
|
2156 // Remove possible previous attachment |
1247 | 2157 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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diff
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|
2158 |
704
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diff
changeset
|
2159 // Locate the patient of the target resource |
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diff
changeset
|
2160 int64_t patientId = resourceId; |
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diff
changeset
|
2161 for (;;) |
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diff
changeset
|
2162 { |
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diff
changeset
|
2163 int64_t parent; |
1247 | 2164 if (db_.LookupParent(parent, patientId)) |
704
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diff
changeset
|
2165 { |
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diff
changeset
|
2166 // We have not reached the patient level yet |
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changeset
|
2167 patientId = parent; |
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changeset
|
2168 } |
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changeset
|
2169 else |
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changeset
|
2170 { |
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changeset
|
2171 // We have reached the patient level |
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changeset
|
2172 break; |
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|
2173 } |
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changeset
|
2174 } |
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changeset
|
2175 |
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diff
changeset
|
2176 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2177 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2178 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2179 |
1247 | 2180 db_.AddAttachment(resourceId, attachment); |
699
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2181 |
1773
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changeset
|
2182 if (IsUserContentType(attachment.GetContentType())) |
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changeset
|
2183 { |
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changeset
|
2184 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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|
2185 } |
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changeset
|
2186 |
699
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changeset
|
2187 t.Commit(attachment.GetCompressedSize()); |
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|
2188 |
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changeset
|
2189 return StoreStatus_Success; |
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changeset
|
2190 } |
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changeset
|
2191 |
702
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changeset
|
2192 |
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changeset
|
2193 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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|
2194 FileContentType type) |
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changeset
|
2195 { |
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changeset
|
2196 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2197 Transaction t(*this); |
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changeset
|
2198 |
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changeset
|
2199 ResourceType rtype; |
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changeset
|
2200 int64_t id; |
1294 | 2201 if (!db_.LookupResource(id, rtype, publicId)) |
702
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changeset
|
2202 { |
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changeset
|
2203 throw OrthancException(ErrorCode_UnknownResource); |
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2204 } |
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|
2205 |
1247 | 2206 db_.DeleteAttachment(id, type); |
702
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2207 |
1773
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2208 if (IsUserContentType(type)) |
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changeset
|
2209 { |
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1757
diff
changeset
|
2210 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2211 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2212 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2213 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2214 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2215 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2216 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2217 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2218 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2219 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2220 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2221 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2222 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2223 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2224 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2225 int64_t id; |
1294 | 2226 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2227 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2228 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2229 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2230 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2231 std::list<MetadataType> metadata; |
1247 | 2232 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2233 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2234 for (std::list<MetadataType>::const_iterator |
1304 | 2235 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2236 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2237 std::string key = EnumerationToString(*it); |
1238 | 2238 |
2239 std::string value; | |
1247 | 2240 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2241 { |
2242 value.clear(); | |
2243 } | |
2244 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2245 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2246 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2247 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2248 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2249 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2250 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2251 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2252 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2253 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2254 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2255 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2256 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2257 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2258 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2259 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2260 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2261 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2262 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2263 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2264 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2265 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2266 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2267 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2268 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2269 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2270 { |
1239 | 2271 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2272 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2273 if (LookupGlobalProperty(value, property)) |
1239 | 2274 { |
2275 return value; | |
2276 } | |
2277 else | |
2278 { | |
2279 return defaultValue; | |
2280 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2281 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2282 |
1352 | 2283 |
2284 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2285 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2286 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2287 ResourceType levelOfInterest) |
1352 | 2288 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2289 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2290 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2291 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2292 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2293 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2294 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2295 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2296 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2297 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2298 |
1352 | 2299 result.Clear(); |
2300 | |
2301 boost::mutex::scoped_lock lock(mutex_); | |
2302 | |
2303 // Lookup for the requested resource | |
2304 int64_t id; | |
2305 ResourceType type; | |
2306 if (!db_.LookupResource(id, type, publicId) || | |
2307 type != expectedType) | |
2308 { | |
2309 return false; | |
2310 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2311 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2312 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2313 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2314 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2315 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2317 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2318 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2323 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2324 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2325 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2326 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2327 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2328 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2329 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2330 } |
1352 | 2331 else |
2332 { | |
2333 db_.GetMainDicomTags(result, id); | |
2334 return true; | |
2335 } | |
2336 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2337 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2338 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2339 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2340 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2341 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2342 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2343 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2344 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2345 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2346 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2347 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2348 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2349 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2350 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2351 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2352 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2353 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2354 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2355 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2356 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2357 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2358 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2359 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2360 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2361 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2362 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2363 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2364 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2367 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2369 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2403 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2404 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2405 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2406 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2407 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2408 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2409 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2410 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2411 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2412 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2413 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2414 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2415 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2416 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2417 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2418 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2419 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2420 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2421 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2422 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2423 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2424 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2425 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2426 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2427 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2428 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2429 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2430 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2431 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2432 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2433 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2434 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2435 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2436 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2437 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2438 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2439 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2440 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2441 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2442 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2443 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2444 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2445 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2446 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2447 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2448 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2449 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2450 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2451 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2452 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2453 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2454 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2455 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2456 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2457 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2458 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2459 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2460 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2461 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2462 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2463 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2464 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2465 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2466 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2467 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2468 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2469 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2470 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2471 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2472 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2473 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2474 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2475 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2476 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2477 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2478 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2479 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2480 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2481 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2483 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2484 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2485 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2486 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2487 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2493 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2494 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2495 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2496 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2497 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2498 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2499 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2500 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2525 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2526 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2527 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2528 const DatabaseLookup& source, |
2529 ResourceType queryLevel) const | |
2530 { | |
2531 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2532 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2533 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2534 target.reserve(source.GetConstraintsCount()); |
3031 | 2535 |
3027 | 2536 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2537 { | |
3031 | 2538 ResourceType level; |
2539 DicomTagType type; | |
3027 | 2540 |
3031 | 2541 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2542 | |
2543 if (type == DicomTagType_Identifier || | |
2544 type == DicomTagType_Main) | |
3027 | 2545 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2546 // Use the fact that patient-level tags are copied at the study level |
3031 | 2547 if (level == ResourceType_Patient && |
2548 queryLevel != ResourceType_Patient) | |
3027 | 2549 { |
3031 | 2550 level = ResourceType_Study; |
3027 | 2551 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2552 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2553 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2554 } |
2555 } | |
2556 } | |
2557 | |
2558 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2559 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
diff
changeset
|
2560 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2561 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2562 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2563 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2564 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2565 std::vector<DatabaseConstraint> normalized; |
3027 | 2566 NormalizeLookup(normalized, lookup, queryLevel); |
2567 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2568 std::list<std::string> resourcesList, instancesList; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2569 |
3027 | 2570 { |
2571 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2572 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2573 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2574 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2575 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2576 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2577 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2578 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2579 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2580 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2581 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2582 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2583 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2584 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2585 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2586 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2587 CopyListToVector(*instancesId, instancesList); |
3027 | 2588 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2589 } |
0 | 2590 } |