annotate Framework/Inputs/DicomPyramidInstance.cpp @ 98:ff0ef01c332c

shared copyright with osimis
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 04 Jan 2017 16:43:25 +0100
parents 61e629ce7c94
children a51dee6a1515
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
98
ff0ef01c332c shared copyright with osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
5 * Copyright (C) 2017 Osimis, Belgium
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
16
7a88c614be04 preparing for precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
22 #include "../PrecompiledHeadersWSI.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #include "DicomPyramidInstance.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
59
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
25 #include "../../Resources/Orthanc/Core/Logging.h"
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
26 #include "../../Resources/Orthanc/Core/OrthancException.h"
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
27 #include "../../Resources/Orthanc/Core/Toolbox.h"
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
28 #include "../../Resources/Orthanc/Plugins/Samples/Common/DicomDatasetReader.h"
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
29 #include "../../Resources/Orthanc/Plugins/Samples/Common/FullOrthancDataset.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 #include "../DicomToolbox.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 #include <cassert>
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
33 #include <json/writer.h>
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
35 #define SERIALIZED_METADATA "4200"
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
36
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
39 static ImageCompression DetectImageCompression(OrthancPlugins::IOrthancConnection& orthanc,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
40 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
42 using namespace OrthancPlugins;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
43
87
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
44 FullOrthancDataset dataset(orthanc, "/instances/" + instanceId + "/header");
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
45 DicomDatasetReader header(dataset);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
46
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 std::string s = Orthanc::Toolbox::StripSpaces
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
48 (header.GetMandatoryStringValue(DICOM_TAG_TRANSFER_SYNTAX_UID));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 if (s == "1.2.840.10008.1.2" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 s == "1.2.840.10008.1.2.1")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 return ImageCompression_None;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 else if (s == "1.2.840.10008.1.2.4.50")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 return ImageCompression_Jpeg;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 else if (s == "1.2.840.10008.1.2.4.90" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 s == "1.2.840.10008.1.2.4.91")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 return ImageCompression_Jpeg2000;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 LOG(ERROR) << "Unsupported transfer syntax: " << s;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
72 static Orthanc::PixelFormat DetectPixelFormat(OrthancPlugins::DicomDatasetReader& reader)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
74 using namespace OrthancPlugins;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
75
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 std::string photometric = Orthanc::Toolbox::StripSpaces
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
77 (reader.GetMandatoryStringValue(DICOM_TAG_PHOTOMETRIC_INTERPRETATION));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 if (photometric == "PALETTE")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 LOG(ERROR) << "Unsupported photometric interpretation: " << photometric;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
85 unsigned int bitsStored, samplesPerPixel, tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
86
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
87 if (!reader.GetUnsignedIntegerValue(bitsStored, DICOM_TAG_BITS_STORED) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
88 !reader.GetUnsignedIntegerValue(samplesPerPixel, DICOM_TAG_SAMPLES_PER_PIXEL) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
89 !reader.GetUnsignedIntegerValue(tmp, DICOM_TAG_PIXEL_REPRESENTATION))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
90 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
91 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
92 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
93
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
94 bool isSigned = (tmp != 0);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 samplesPerPixel == 1 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 return Orthanc::PixelFormat_Grayscale8;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 else if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 samplesPerPixel == 3 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 return Orthanc::PixelFormat_RGB24;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 LOG(ERROR) << "Unsupported pixel format";
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
115
61
147bd6dc28db refactoring using new items in the plugin toolbox of Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
116 ImageCompression DicomPyramidInstance::GetImageCompression(OrthancPlugins::IOrthancConnection& orthanc)
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
117 {
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
118 /**
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
119 * Lazy detection of the image compression using the transfer
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
120 * syntax stored inside the DICOM header. Given the fact that
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
121 * reading the header is a time-consuming operation (it implies
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
122 * the decoding of the DICOM image by Orthanc, whereas the "/tags"
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
123 * endpoint only reads the "DICOM-as-JSON" attachment), the
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
124 * "/header" REST call is delayed until it is really required.
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
125 **/
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
126
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
127 if (!hasCompression_)
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
128 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
129 compression_ = DetectImageCompression(orthanc, instanceId_);
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
130 hasCompression_ = true;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
131 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
132
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
133 return compression_;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
134 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
135
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
137 void DicomPyramidInstance::Load(OrthancPlugins::IOrthancConnection& orthanc,
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
138 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
140 using namespace OrthancPlugins;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141
87
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
142 FullOrthancDataset dataset(orthanc, "/instances/" + instanceId + "/tags");
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
143 DicomDatasetReader reader(dataset);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
144
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
145 if (reader.GetMandatoryStringValue(DICOM_TAG_SOP_CLASS_UID) != "1.2.840.10008.5.1.4.1.1.77.1.6" ||
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
146 reader.GetMandatoryStringValue(DICOM_TAG_MODALITY) != "SM")
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
151 hasCompression_ = false;
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
152 format_ = DetectPixelFormat(reader);
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
153
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
154 unsigned int tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
155 if (!reader.GetUnsignedIntegerValue(tileWidth_, DICOM_TAG_COLUMNS) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
156 !reader.GetUnsignedIntegerValue(tileHeight_, DICOM_TAG_ROWS) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
157 !reader.GetUnsignedIntegerValue(totalWidth_, DICOM_TAG_TOTAL_PIXEL_MATRIX_COLUMNS) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
158 !reader.GetUnsignedIntegerValue(totalHeight_, DICOM_TAG_TOTAL_PIXEL_MATRIX_ROWS) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
159 !reader.GetUnsignedIntegerValue(tmp, DICOM_TAG_NUMBER_OF_FRAMES))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
160 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
161 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
162 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
164 size_t countFrames;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
165 if (!reader.GetDataset().GetSequenceSize(countFrames, DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE))
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
166 {
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
167 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
168 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
170 if (countFrames != tmp)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 LOG(ERROR) << "Mismatch between the number of frames in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
176 frames_.resize(countFrames);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
178 for (size_t i = 0; i < countFrames; i++)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 {
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
180 DicomPath pathX(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
181 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
182 DICOM_TAG_COLUMN_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
183
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
184 DicomPath pathY(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
185 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
186 DICOM_TAG_ROW_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
187
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
188 int xx, yy;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
189 if (!reader.GetIntegerValue(xx, pathX) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
190 !reader.GetIntegerValue(yy, pathY))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
191 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
192 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
193 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 // "-1", because coordinates are shifted by 1 in DICOM
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
196 xx -= 1;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
197 yy -= 1;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 unsigned int x = static_cast<unsigned int>(xx);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 unsigned int y = static_cast<unsigned int>(yy);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 if (xx < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 yy < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 x % tileWidth_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 y % tileHeight_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206 x >= totalWidth_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 y >= totalHeight_)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 LOG(ERROR) << "Frame " << i << " with unexpected tile location ("
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 << x << "," << y << ") in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 frames_[i].first = x / tileWidth_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 frames_[i].second = y / tileHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
220 DicomPyramidInstance::DicomPyramidInstance(OrthancPlugins::IOrthancConnection& orthanc,
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
221 const std::string& instanceId,
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
222 bool useCache) :
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
223 instanceId_(instanceId),
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
224 hasCompression_(false)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
225 {
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
226 if (useCache)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
227 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
228 try
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
229 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
230 // Try and deserialized the cached information about this instance
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
231 std::string serialized;
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
232 orthanc.RestApiGet(serialized, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
233 Deserialize(serialized);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
234 return; // Success
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
235 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
236 catch (Orthanc::OrthancException&)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
237 {
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
238 // No cached information yet
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
239 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
240 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
241
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
242 // Compute information about this instance from scratch
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
243 Load(orthanc, instanceId);
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
244
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
245 if (useCache)
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
246 {
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
247 // Serialize the computed information and cache it as a metadata
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
248 std::string serialized, tmp;
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
249 Serialize(serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
250 orthanc.RestApiPut(tmp, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA, serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
251 }
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
252 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
253
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
254
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 unsigned int DicomPyramidInstance::GetFrameLocationX(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 return frames_[frame].first;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 unsigned int DicomPyramidInstance::GetFrameLocationY(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 return frames_[frame].second;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
267
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
268
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
269 void DicomPyramidInstance::Serialize(std::string& result) const
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
270 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
271 Json::Value frames = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
272 for (size_t i = 0; i < frames_.size(); i++)
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
273 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
274 Json::Value frame = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
275 frame.append(frames_[i].first);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
276 frame.append(frames_[i].second);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
277
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
278 frames.append(frame);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
279 }
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
280
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
281 Json::Value content;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
282 content["Frames"] = frames;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
283 content["TileHeight"] = tileHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
284 content["TileWidth"] = tileWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
285 content["TotalHeight"] = totalHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
286 content["TotalWidth"] = totalWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
287
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
288 switch (format_)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
289 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
290 case Orthanc::PixelFormat_RGB24:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
291 content["PixelFormat"] = 0;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
292 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
293
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
294 case Orthanc::PixelFormat_Grayscale8:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
295 content["PixelFormat"] = 1;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
296 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
297
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
298 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
299 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
300 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
301
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
302 Json::FastWriter writer;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
303 result = writer.write(content);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
304 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
305
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
306
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
307 void DicomPyramidInstance::Deserialize(const std::string& s)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
308 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
309 hasCompression_ = false;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
310
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
311 Json::Value content;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
312 OrthancPlugins::IOrthancConnection::ParseJson(content, s);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
313
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
314 if (content.type() != Json::objectValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
315 !content.isMember("Frames") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
316 !content.isMember("PixelFormat") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
317 !content.isMember("TileHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
318 !content.isMember("TileWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
319 !content.isMember("TotalHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
320 !content.isMember("TotalWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
321 content["Frames"].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
322 content["PixelFormat"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
323 content["TileHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
324 content["TileWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
325 content["TotalHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
326 content["TotalWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
327 content["TileHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
328 content["TileWidth"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
329 content["TotalHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
330 content["TotalWidth"].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
331 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
332 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
333 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
334
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
335 switch (content["PixelFormat"].asInt())
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
336 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
337 case 0:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
338 format_ = Orthanc::PixelFormat_RGB24;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
339 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
340
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
341 case 1:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
342 format_ = Orthanc::PixelFormat_Grayscale8;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
343 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
344
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
345 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
346 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
347 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
348
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
349 hasCompression_ = false;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
350 tileHeight_ = static_cast<unsigned int>(content["TileHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
351 tileWidth_ = static_cast<unsigned int>(content["TileWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
352 totalHeight_ = static_cast<unsigned int>(content["TotalHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
353 totalWidth_ = static_cast<unsigned int>(content["TotalWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
354
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
355 const Json::Value f = content["Frames"];
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
356 frames_.resize(f.size());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
357
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
358 for (Json::Value::ArrayIndex i = 0; i < f.size(); i++)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
359 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
360 if (f[i].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
361 f[i].size() != 2 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
362 f[i][0].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
363 f[i][1].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
364 f[i][0].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
365 f[i][1].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
366 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
367 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
368 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
369
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
370 frames_[i].first = f[i][0].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
371 frames_[i].second = f[i][1].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
372 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
373 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 }