annotate Framework/Inputs/DicomPyramidInstance.cpp @ 70:f2c179294382

improvement
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 25 Nov 2016 21:57:47 +0100
parents d529d9ce3c7e
children 3d83d34cd4db
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
16
7a88c614be04 preparing for precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
21 #include "../PrecompiledHeadersWSI.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "DicomPyramidInstance.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
59
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
24 #include "../../Resources/Orthanc/Core/Logging.h"
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
25 #include "../../Resources/Orthanc/Core/OrthancException.h"
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
26 #include "../../Resources/Orthanc/Core/Toolbox.h"
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
27 #include "../../Resources/Orthanc/Plugins/Samples/Common/DicomDatasetReader.h"
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
28 #include "../../Resources/Orthanc/Plugins/Samples/Common/FullOrthancDataset.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 #include "../DicomToolbox.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 #include <cassert>
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
32 #include <json/writer.h>
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
34 #define SERIALIZED_METADATA "4200"
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
35
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
38 static ImageCompression DetectImageCompression(OrthancPlugins::IOrthancConnection& orthanc,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
39 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
41 using namespace OrthancPlugins;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
42
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
43 DicomDatasetReader header(new FullOrthancDataset
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
44 (orthanc, "/instances/" + instanceId + "/header"));
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
45
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 std::string s = Orthanc::Toolbox::StripSpaces
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
47 (header.GetMandatoryStringValue(DICOM_TAG_TRANSFER_SYNTAX_UID));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 if (s == "1.2.840.10008.1.2" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 s == "1.2.840.10008.1.2.1")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 return ImageCompression_None;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 else if (s == "1.2.840.10008.1.2.4.50")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 return ImageCompression_Jpeg;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 else if (s == "1.2.840.10008.1.2.4.90" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 s == "1.2.840.10008.1.2.4.91")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 return ImageCompression_Jpeg2000;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 LOG(ERROR) << "Unsupported transfer syntax: " << s;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
71 static Orthanc::PixelFormat DetectPixelFormat(OrthancPlugins::DicomDatasetReader& reader)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
73 using namespace OrthancPlugins;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
74
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 std::string photometric = Orthanc::Toolbox::StripSpaces
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
76 (reader.GetMandatoryStringValue(DICOM_TAG_PHOTOMETRIC_INTERPRETATION));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 if (photometric == "PALETTE")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 LOG(ERROR) << "Unsupported photometric interpretation: " << photometric;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
84 unsigned int bitsStored = reader.GetUnsignedIntegerValue(DICOM_TAG_BITS_STORED);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
85 unsigned int samplesPerPixel = reader.GetUnsignedIntegerValue(DICOM_TAG_SAMPLES_PER_PIXEL);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
86 bool isSigned = (reader.GetUnsignedIntegerValue(DICOM_TAG_PIXEL_REPRESENTATION) != 0);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 samplesPerPixel == 1 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 return Orthanc::PixelFormat_Grayscale8;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 else if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 samplesPerPixel == 3 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 return Orthanc::PixelFormat_RGB24;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 LOG(ERROR) << "Unsupported pixel format";
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
107
61
147bd6dc28db refactoring using new items in the plugin toolbox of Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
108 ImageCompression DicomPyramidInstance::GetImageCompression(OrthancPlugins::IOrthancConnection& orthanc)
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
109 {
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
110 /**
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
111 * Lazy detection of the image compression using the transfer
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
112 * syntax stored inside the DICOM header. Given the fact that
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
113 * reading the header is a time-consuming operation (it implies
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
114 * the decoding of the DICOM image by Orthanc, whereas the "/tags"
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
115 * endpoint only reads the "DICOM-as-JSON" attachment), the
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
116 * "/header" REST call is delayed until it is really required.
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
117 **/
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
118
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
119 if (!hasCompression_)
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
120 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
121 compression_ = DetectImageCompression(orthanc, instanceId_);
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
122 hasCompression_ = true;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
123 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
124
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
125 return compression_;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
126 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
127
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
129 void DicomPyramidInstance::Load(OrthancPlugins::IOrthancConnection& orthanc,
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
130 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
132 using namespace OrthancPlugins;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
134 DicomDatasetReader reader(new FullOrthancDataset(orthanc, "/instances/" + instanceId + "/tags"));
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
135
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
136 if (reader.GetMandatoryStringValue(DICOM_TAG_SOP_CLASS_UID) != "1.2.840.10008.5.1.4.1.1.77.1.6" ||
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
137 reader.GetMandatoryStringValue(DICOM_TAG_MODALITY) != "SM")
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
142 hasCompression_ = false;
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
143 format_ = DetectPixelFormat(reader);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
144 tileWidth_ = reader.GetUnsignedIntegerValue(DICOM_TAG_COLUMNS);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
145 tileHeight_ = reader.GetUnsignedIntegerValue(DICOM_TAG_ROWS);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
146 totalWidth_ = reader.GetUnsignedIntegerValue(DICOM_TAG_TOTAL_PIXEL_MATRIX_COLUMNS);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
147 totalHeight_ = reader.GetUnsignedIntegerValue(DICOM_TAG_TOTAL_PIXEL_MATRIX_ROWS);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
149 size_t countFrames;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
150 if (!reader.GetDataset().GetSequenceSize(countFrames, DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE))
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
151 {
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
152 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
153 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
155 if (countFrames != reader.GetUnsignedIntegerValue(DICOM_TAG_NUMBER_OF_FRAMES))
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 LOG(ERROR) << "Mismatch between the number of frames in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
161 frames_.resize(countFrames);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
163 for (size_t i = 0; i < countFrames; i++)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
165 int xx = reader.GetIntegerValue(DicomPath(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
166 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
167 DICOM_TAG_COLUMN_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX));
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
168
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
169 int yy = reader.GetIntegerValue(DicomPath(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
170 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
171 DICOM_TAG_ROW_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 // "-1", because coordinates are shifted by 1 in DICOM
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
174 xx -= 1;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
175 yy -= 1;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 unsigned int x = static_cast<unsigned int>(xx);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 unsigned int y = static_cast<unsigned int>(yy);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 if (xx < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 yy < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 x % tileWidth_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 y % tileHeight_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 x >= totalWidth_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185 y >= totalHeight_)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 LOG(ERROR) << "Frame " << i << " with unexpected tile location ("
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 << x << "," << y << ") in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192 frames_[i].first = x / tileWidth_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 frames_[i].second = y / tileHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
198 DicomPyramidInstance::DicomPyramidInstance(OrthancPlugins::IOrthancConnection& orthanc,
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
199 const std::string& instanceId,
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
200 bool useCache) :
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
201 instanceId_(instanceId),
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
202 hasCompression_(false)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
203 {
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
204 if (useCache)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
205 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
206 try
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
207 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
208 // Try and deserialized the cached information about this instance
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
209 std::string serialized;
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
210 orthanc.RestApiGet(serialized, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
211 Deserialize(serialized);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
212 return; // Success
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
213 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
214 catch (Orthanc::OrthancException&)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
215 {
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
216 // No cached information yet
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
217 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
218 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
219
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
220 // Compute information about this instance from scratch
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
221 Load(orthanc, instanceId);
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
222
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
223 if (useCache)
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
224 {
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
225 // Serialize the computed information and cache it as a metadata
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
226 std::string serialized, tmp;
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
227 Serialize(serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
228 orthanc.RestApiPut(tmp, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA, serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
229 }
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
230 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
231
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
232
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 unsigned int DicomPyramidInstance::GetFrameLocationX(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 return frames_[frame].first;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 unsigned int DicomPyramidInstance::GetFrameLocationY(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 return frames_[frame].second;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
245
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
246
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
247 void DicomPyramidInstance::Serialize(std::string& result) const
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
248 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
249 Json::Value frames = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
250 for (size_t i = 0; i < frames_.size(); i++)
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
251 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
252 Json::Value frame = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
253 frame.append(frames_[i].first);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
254 frame.append(frames_[i].second);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
255
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
256 frames.append(frame);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
257 }
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
258
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
259 Json::Value content;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
260 content["Frames"] = frames;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
261 content["TileHeight"] = tileHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
262 content["TileWidth"] = tileWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
263 content["TotalHeight"] = totalHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
264 content["TotalWidth"] = totalWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
265
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
266 switch (format_)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
267 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
268 case Orthanc::PixelFormat_RGB24:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
269 content["PixelFormat"] = 0;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
270 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
271
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
272 case Orthanc::PixelFormat_Grayscale8:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
273 content["PixelFormat"] = 1;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
274 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
275
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
276 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
277 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
278 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
279
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
280 Json::FastWriter writer;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
281 result = writer.write(content);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
282 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
283
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
284
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
285 void DicomPyramidInstance::Deserialize(const std::string& s)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
286 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
287 hasCompression_ = false;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
288
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
289 Json::Value content;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
290 OrthancPlugins::IOrthancConnection::ParseJson(content, s);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
291
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
292 if (content.type() != Json::objectValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
293 !content.isMember("Frames") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
294 !content.isMember("PixelFormat") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
295 !content.isMember("TileHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
296 !content.isMember("TileWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
297 !content.isMember("TotalHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
298 !content.isMember("TotalWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
299 content["Frames"].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
300 content["PixelFormat"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
301 content["TileHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
302 content["TileWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
303 content["TotalHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
304 content["TotalWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
305 content["TileHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
306 content["TileWidth"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
307 content["TotalHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
308 content["TotalWidth"].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
309 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
310 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
311 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
312
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
313 switch (content["PixelFormat"].asInt())
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
314 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
315 case 0:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
316 format_ = Orthanc::PixelFormat_RGB24;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
317 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
318
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
319 case 1:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
320 format_ = Orthanc::PixelFormat_Grayscale8;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
321 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
322
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
323 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
324 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
325 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
326
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
327 hasCompression_ = false;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
328 tileHeight_ = static_cast<unsigned int>(content["TileHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
329 tileWidth_ = static_cast<unsigned int>(content["TileWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
330 totalHeight_ = static_cast<unsigned int>(content["TotalHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
331 totalWidth_ = static_cast<unsigned int>(content["TotalWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
332
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
333 const Json::Value f = content["Frames"];
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
334 frames_.resize(f.size());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
335
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
336 for (Json::Value::ArrayIndex i = 0; i < f.size(); i++)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
337 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
338 if (f[i].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
339 f[i].size() != 2 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
340 f[i][0].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
341 f[i][1].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
342 f[i][0].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
343 f[i][1].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
344 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
345 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
346 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
347
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
348 frames_[i].first = f[i][0].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
349 frames_[i].second = f[i][1].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
350 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
351 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 }