annotate Framework/Inputs/DicomPyramidInstance.cpp @ 196:b0bd22077cd8

sharing code with orthanc-stone
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 01 Jul 2020 17:57:38 +0200
parents e57e6ca5303d
children 2a4e1f7de5ab
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
175
e3cbf890b588 upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 166
diff changeset
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
16
7a88c614be04 preparing for precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
22 #include "../PrecompiledHeadersWSI.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #include "DicomPyramidInstance.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
194
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
25 #include "../DicomToolbox.h"
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
26 #include "../../Resources/Orthanc/Stone/DicomDatasetReader.h"
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
27 #include "../../Resources/Orthanc/Stone/FullOrthancDataset.h"
194
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
28
192
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
29 #include <Logging.h>
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
30 #include <OrthancException.h>
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
31 #include <Toolbox.h>
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
32
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 #include <cassert>
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
34 #include <json/writer.h>
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
36 #define SERIALIZED_METADATA "4200"
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
37
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
38
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 {
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
41 static const Orthanc::DicomTag DICOM_TAG_COLUMN_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX(0x0048, 0x021e);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
42 static const Orthanc::DicomTag DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE(0x5200, 0x9230);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
43 static const Orthanc::DicomTag DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE(0x0048, 0x021a);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
44 static const Orthanc::DicomTag DICOM_TAG_ROW_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX(0x0048, 0x021f);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
45 static const Orthanc::DicomTag DICOM_TAG_TOTAL_PIXEL_MATRIX_COLUMNS(0x0048, 0x0006);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
46 static const Orthanc::DicomTag DICOM_TAG_TOTAL_PIXEL_MATRIX_ROWS(0x0048, 0x0007);
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
47
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
48 static ImageCompression DetectImageCompression(OrthancStone::IOrthancConnection& orthanc,
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
49 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 {
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
51 using namespace OrthancStone;
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
52
87
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
53 FullOrthancDataset dataset(orthanc, "/instances/" + instanceId + "/header");
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
54 DicomDatasetReader header(dataset);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
55
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 std::string s = Orthanc::Toolbox::StripSpaces
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
57 (header.GetMandatoryStringValue(Orthanc::DICOM_TAG_TRANSFER_SYNTAX_UID));
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 if (s == "1.2.840.10008.1.2" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 s == "1.2.840.10008.1.2.1")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 return ImageCompression_None;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 else if (s == "1.2.840.10008.1.2.4.50")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 return ImageCompression_Jpeg;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 else if (s == "1.2.840.10008.1.2.4.90" ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 s == "1.2.840.10008.1.2.4.91")
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 return ImageCompression_Jpeg2000;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 LOG(ERROR) << "Unsupported transfer syntax: " << s;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
81 static void DetectPixelFormat(Orthanc::PixelFormat& format,
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
82 Orthanc::PhotometricInterpretation& photometric,
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
83 OrthancStone::DicomDatasetReader& reader)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 {
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
85 using namespace OrthancStone;
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
86
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
87 std::string p = Orthanc::Toolbox::StripSpaces
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
88 (reader.GetMandatoryStringValue(Orthanc::DICOM_TAG_PHOTOMETRIC_INTERPRETATION));
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
89
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
90 photometric = Orthanc::StringToPhotometricInterpretation(p.c_str());
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
92 if (photometric == Orthanc::PhotometricInterpretation_Palette)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 {
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
94 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented,
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
95 "Unsupported photometric interpretation: " + p);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
98 unsigned int bitsStored, samplesPerPixel, tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
99
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
100 if (!reader.GetUnsignedIntegerValue(bitsStored, Orthanc::DICOM_TAG_BITS_STORED) ||
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
101 !reader.GetUnsignedIntegerValue(samplesPerPixel, Orthanc::DICOM_TAG_SAMPLES_PER_PIXEL) ||
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
102 !reader.GetUnsignedIntegerValue(tmp, Orthanc::DICOM_TAG_PIXEL_REPRESENTATION))
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
103 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
104 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
105 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
106
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
107 bool isSigned = (tmp != 0);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 samplesPerPixel == 1 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 {
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
113 format = Orthanc::PixelFormat_Grayscale8;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 else if (bitsStored == 8 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 samplesPerPixel == 3 &&
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 !isSigned)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 {
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
119 format = Orthanc::PixelFormat_RGB24;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 {
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
123 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "Unsupported pixel format");
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
127
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
128 ImageCompression DicomPyramidInstance::GetImageCompression(OrthancStone::IOrthancConnection& orthanc)
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
129 {
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
130 /**
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
131 * Lazy detection of the image compression using the transfer
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
132 * syntax stored inside the DICOM header. Given the fact that
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
133 * reading the header is a time-consuming operation (it implies
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
134 * the decoding of the DICOM image by Orthanc, whereas the "/tags"
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
135 * endpoint only reads the "DICOM-as-JSON" attachment), the
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
136 * "/header" REST call is delayed until it is really required.
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
137 **/
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
138
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
139 if (!hasCompression_)
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
140 {
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
141 compression_ = DetectImageCompression(orthanc, instanceId_);
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
142 hasCompression_ = true;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
143 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
144
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
145 return compression_;
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
146 }
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
147
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
149 void DicomPyramidInstance::Load(OrthancStone::IOrthancConnection& orthanc,
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
150 const std::string& instanceId)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 {
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
152 using namespace OrthancStone;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153
87
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
154 FullOrthancDataset dataset(orthanc, "/instances/" + instanceId + "/tags");
3d83d34cd4db sync, optimizations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
155 DicomDatasetReader reader(dataset);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
156
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
157 if (reader.GetMandatoryStringValue(Orthanc::DICOM_TAG_SOP_CLASS_UID) != "1.2.840.10008.5.1.4.1.1.77.1.6" ||
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
158 reader.GetMandatoryStringValue(Orthanc::DICOM_TAG_MODALITY) != "SM")
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
163 hasCompression_ = false;
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
164 DetectPixelFormat(format_, photometric_, reader);
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
165
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
166 unsigned int tmp;
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
167 if (!reader.GetUnsignedIntegerValue(tileWidth_, Orthanc::DICOM_TAG_COLUMNS) ||
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
168 !reader.GetUnsignedIntegerValue(tileHeight_, Orthanc::DICOM_TAG_ROWS) ||
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
169 !reader.GetUnsignedIntegerValue(totalWidth_, DICOM_TAG_TOTAL_PIXEL_MATRIX_COLUMNS) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
170 !reader.GetUnsignedIntegerValue(totalHeight_, DICOM_TAG_TOTAL_PIXEL_MATRIX_ROWS) ||
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
171 !reader.GetUnsignedIntegerValue(tmp, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES))
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
172 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
173 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
174 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
176 size_t countFrames;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
177 if (!reader.GetDataset().GetSequenceSize(countFrames, DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE))
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
178 {
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
179 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
180 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
182 if (countFrames != tmp)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 LOG(ERROR) << "Mismatch between the number of frames in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
188 frames_.resize(countFrames);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
190 for (size_t i = 0; i < countFrames; i++)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 {
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
192 DicomPath pathX(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
193 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
194 DICOM_TAG_COLUMN_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX);
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
195
89
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
196 DicomPath pathY(DICOM_TAG_PER_FRAME_FUNCTIONAL_GROUPS_SEQUENCE, i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
197 DICOM_TAG_PLANE_POSITION_SLIDE_SEQUENCE, 0,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
198 DICOM_TAG_ROW_POSITION_IN_TOTAL_IMAGE_PIXEL_MATRIX);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
199
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
200 int xx, yy;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
201 if (!reader.GetIntegerValue(xx, pathX) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
202 !reader.GetIntegerValue(yy, pathY))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
203 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
204 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
205 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 // "-1", because coordinates are shifted by 1 in DICOM
62
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
208 xx -= 1;
f45cec2c32e2 Speed-up in the Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
209 yy -= 1;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 unsigned int x = static_cast<unsigned int>(xx);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 unsigned int y = static_cast<unsigned int>(yy);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 if (xx < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 yy < 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 x % tileWidth_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 y % tileHeight_ != 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 x >= totalWidth_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 y >= totalHeight_)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 LOG(ERROR) << "Frame " << i << " with unexpected tile location ("
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 << x << "," << y << ") in instance: " << instanceId;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 frames_[i].first = x / tileWidth_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227 frames_[i].second = y / tileHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
232 DicomPyramidInstance::DicomPyramidInstance(OrthancStone::IOrthancConnection& orthanc,
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
233 const std::string& instanceId,
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
234 bool useCache) :
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
235 instanceId_(instanceId),
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
236 hasCompression_(false)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
237 {
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
238 if (useCache)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
239 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
240 try
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
241 {
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
242 // Try and deserialized the cached information about this instance
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
243 std::string serialized;
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
244 orthanc.RestApiGet(serialized, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
245 Deserialize(serialized);
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
246 return; // Success
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
247 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
248 catch (Orthanc::OrthancException&)
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
249 {
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
250 // No cached information yet
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
251 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
252 }
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
253
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
254 // Compute information about this instance from scratch
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
255 Load(orthanc, instanceId);
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
256
70
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
257 if (useCache)
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
258 {
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
259 // Serialize the computed information and cache it as a metadata
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
260 std::string serialized, tmp;
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
261 Serialize(serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
262 orthanc.RestApiPut(tmp, "/instances/" + instanceId + "/metadata/" + SERIALIZED_METADATA, serialized);
f2c179294382 improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
263 }
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
264 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
265
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
266
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 unsigned int DicomPyramidInstance::GetFrameLocationX(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 return frames_[frame].first;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 unsigned int DicomPyramidInstance::GetFrameLocationY(size_t frame) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 assert(frame < frames_.size());
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 return frames_[frame].second;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
279
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
280
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
281 void DicomPyramidInstance::Serialize(std::string& result) const
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
282 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
283 Json::Value frames = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
284 for (size_t i = 0; i < frames_.size(); i++)
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
285 {
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
286 Json::Value frame = Json::arrayValue;
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
287 frame.append(frames_[i].first);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
288 frame.append(frames_[i].second);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
289
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
290 frames.append(frame);
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
291 }
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
292
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
293 Json::Value content;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
294 content["Frames"] = frames;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
295 content["TileHeight"] = tileHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
296 content["TileWidth"] = tileWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
297 content["TotalHeight"] = totalHeight_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
298 content["TotalWidth"] = totalWidth_;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
299
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
300 switch (format_)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
301 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
302 case Orthanc::PixelFormat_RGB24:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
303 content["PixelFormat"] = 0;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
304 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
305
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
306 case Orthanc::PixelFormat_Grayscale8:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
307 content["PixelFormat"] = 1;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
308 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
309
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
310 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
311 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
312 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
313
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
314 Json::FastWriter writer;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
315 result = writer.write(content);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
316 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
317
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
318
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
319 void DicomPyramidInstance::Deserialize(const std::string& s)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
320 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
321 hasCompression_ = false;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
322
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
323 Json::Value content;
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 194
diff changeset
324 OrthancStone::IOrthancConnection::ParseJson(content, s);
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
325
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
326 if (content.type() != Json::objectValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
327 !content.isMember("Frames") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
328 !content.isMember("PixelFormat") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
329 !content.isMember("TileHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
330 !content.isMember("TileWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
331 !content.isMember("TotalHeight") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
332 !content.isMember("TotalWidth") ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
333 content["Frames"].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
334 content["PixelFormat"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
335 content["TileHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
336 content["TileWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
337 content["TotalHeight"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
338 content["TotalWidth"].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
339 content["TileHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
340 content["TileWidth"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
341 content["TotalHeight"].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
342 content["TotalWidth"].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
343 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
344 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
345 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
346
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
347 switch (content["PixelFormat"].asInt())
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
348 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
349 case 0:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
350 format_ = Orthanc::PixelFormat_RGB24;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
351 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
352
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
353 case 1:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
354 format_ = Orthanc::PixelFormat_Grayscale8;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
355 break;
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
356
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
357 default:
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
358 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
359 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
360
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
361 hasCompression_ = false;
68
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
362 tileHeight_ = static_cast<unsigned int>(content["TileHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
363 tileWidth_ = static_cast<unsigned int>(content["TileWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
364 totalHeight_ = static_cast<unsigned int>(content["TotalHeight"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
365 totalWidth_ = static_cast<unsigned int>(content["TotalWidth"].asInt());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
366
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
367 const Json::Value f = content["Frames"];
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
368 frames_.resize(f.size());
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
369
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
370 for (Json::Value::ArrayIndex i = 0; i < f.size(); i++)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
371 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
372 if (f[i].type() != Json::arrayValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
373 f[i].size() != 2 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
374 f[i][0].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
375 f[i][1].type() != Json::intValue ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
376 f[i][0].asInt() < 0 ||
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
377 f[i][1].asInt() < 0)
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
378 {
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
379 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
380 }
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
381
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
382 frames_[i].first = f[i][0].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
383 frames_[i].second = f[i][1].asInt();
c619c8bd72ed DicomPyramidInstance::Deserialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
384 }
64
63d0a5c74460 DicomPyramidInstance::Serialize
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
385 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 }