Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 610:ec657d1a62a6 Orthanc-1.12.3
fix compatibility with python3
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Wed, 31 Jan 2024 12:18:20 +0100 |
| parents | ba06331ac8dd |
| children | 9f8276ac1cdd |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
| 85 | 25 |
| 26 # You must add the following to the configuration file: | |
| 27 # | |
| 28 # "DicomWeb" : { | |
| 29 # "Servers" : { | |
| 30 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 31 # } | |
| 32 # } | |
| 33 | |
| 34 | |
| 35 | |
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36 import argparse |
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37 import copy |
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38 import os |
| 33 | 39 import pprint |
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40 import pydicom |
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41 import re |
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42 import sys |
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43 import unittest |
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44 import xml.dom.minidom |
| 575 | 45 import time |
| 304 | 46 from PIL import ImageChops |
| 563 | 47 from io import BytesIO |
| 33 | 48 from DicomWeb import * |
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49 |
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50 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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51 from Toolbox import * |
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52 |
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53 |
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54 ## |
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55 ## Parse the command-line arguments |
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56 ## |
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57 |
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58 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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59 |
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60 parser.add_argument('--server', |
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61 default = 'localhost', |
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62 help = 'Address of the Orthanc server to test') |
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63 parser.add_argument('--rest', |
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64 type = int, |
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65 default = 8042, |
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66 help = 'Port to the REST API') |
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67 parser.add_argument('--username', |
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68 default = 'alice', |
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69 help = 'Username to the REST API') |
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70 parser.add_argument('--password', |
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71 default = 'orthanctest', |
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72 help = 'Password to the REST API') |
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73 parser.add_argument('--wado', |
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74 default = '/wado', |
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75 help = 'Path to the WADO API') |
| 33 | 76 parser.add_argument('--dicomweb', |
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77 default = '/dicom-web/', |
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78 help = 'Path to the DICOMweb API') |
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79 parser.add_argument('--force', help = 'Do not warn the user', |
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80 action = 'store_true') |
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81 parser.add_argument('options', metavar = 'N', nargs = '*', |
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82 help='Arguments to Python unittest') |
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83 |
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84 args = parser.parse_args() |
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85 |
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86 |
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87 ## |
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88 ## Configure the testing context |
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89 ## |
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90 |
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91 if not args.force: |
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92 print(""" |
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93 WARNING: This test will remove all the content of your |
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94 Orthanc instance running on %s! |
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95 |
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96 Are you sure ["yes" to go on]?""" % args.server) |
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97 |
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98 if sys.stdin.readline().strip() != 'yes': |
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99 print('Aborting...') |
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100 exit(0) |
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101 |
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102 |
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103 ORTHANC = DefineOrthanc(server = args.server, |
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104 username = args.username, |
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105 password = args.password, |
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106 restPort = args.rest) |
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107 |
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108 |
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109 ## |
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110 ## The tests |
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111 ## |
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112 |
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113 |
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114 def UploadAndGetWadoPath(dicom): |
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115 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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116 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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117 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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118 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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119 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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120 |
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121 |
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122 |
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123 class Orthanc(unittest.TestCase): |
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124 def setUp(self): |
| 83 | 125 if (sys.version_info >= (3, 0)): |
| 126 # Remove annoying warnings about unclosed socket in Python 3 | |
| 127 import warnings | |
| 128 warnings.simplefilter("ignore", ResourceWarning) | |
| 129 | |
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130 #print("In test: ", self._testMethodName) |
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131 |
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132 DropOrthanc(ORTHANC) |
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133 |
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134 def test_wado_dicom(self): |
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135 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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136 |
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137 SIZE = 169478 |
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138 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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139 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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140 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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141 |
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142 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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143 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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144 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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145 |
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146 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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147 self.assertEqual(SIZE, len(dicom)) |
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148 |
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149 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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150 self.assertEqual(SIZE, len(dicom)) |
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151 |
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152 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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153 self.assertEqual(SIZE, len(dicom)) |
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154 |
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155 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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156 self.assertEqual(SIZE, len(dicom)) |
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157 |
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158 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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159 self.assertEqual(SIZE, len(dicom)) |
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160 |
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161 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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162 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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163 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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164 |
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165 def test_wado_image(self): |
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166 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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167 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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168 |
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169 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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170 self.assertEqual('JPEG', im.format) |
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171 self.assertEqual('L', im.mode) |
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172 self.assertEqual(512, im.size[0]) |
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173 self.assertEqual(358, im.size[1]) |
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174 |
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175 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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176 self.assertEqual('JPEG', im.format) |
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177 |
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178 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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179 self.assertEqual('PNG', im.format) |
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180 self.assertEqual('L', im.mode) |
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181 self.assertEqual(512, im.size[0]) |
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182 self.assertEqual(358, im.size[1]) |
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183 |
| 33 | 184 def test_stow(self): |
| 185 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 186 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 187 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 188 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 189 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 190 | |
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191 self.assertEqual(4, len(a)) |
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192 |
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193 # Specific character set |
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194 self.assertTrue('00080005' in a) |
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195 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 196 |
| 197 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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198 self.assertEqual('UR', a['00081190']['vr']) |
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199 |
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200 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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201 self.assertEqual('SQ', a['00081198']['vr']) |
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202 |
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203 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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204 self.assertEqual('SQ', a['00081199']['vr']) |
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205 |
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206 b = a['00081199']['Value'][0] |
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207 |
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208 # Referenced SOP class UID |
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209 self.assertEqual('UI', b['00081150']['vr']) |
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210 self.assertEqual(1, len(b['00081150']['Value'])) |
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211 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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212 |
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213 # Referenced SOP instance UID |
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214 self.assertEqual('UI', b['00081155']['vr']) |
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215 self.assertEqual(1, len(b['00081155']['Value'])) |
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216 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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217 |
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218 # Retrieve URL |
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219 self.assertEqual('UR', b['00081190']['vr']) |
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220 self.assertEqual(1, len(b['00081190']['Value'])) |
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221 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 222 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 223 | |
| 83 | 224 # Remove the "http://localhost:8042" prefix |
| 225 url = a['00081190']['Value'][0] | |
| 226 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 227 | |
|
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228 # Get the content-length of all the multiparts of this WADO-RS |
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229 # request (prevent transcoding by setting transfer-syntax to |
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230 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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231 b = DoGet(ORTHANC, url, headers = { |
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232 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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233 }).decode('utf-8', 'ignore') |
| 83 | 234 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
| 235 self.assertEqual(1, len(parts)) | |
| 236 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 237 |
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238 |
| 84 | 239 def test_server_get(self): |
| 277 | 240 try: |
| 241 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 242 except: | |
| 243 pass | |
| 244 | |
|
388
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245 try: |
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246 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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247 except: |
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248 pass |
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249 |
| 84 | 250 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 251 | |
| 252 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 253 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 254 | |
| 129 | 255 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 256 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 257 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 258 | |
| 84 | 259 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 260 self.assertEqual(5, len(sample)) |
| 84 | 261 self.assertTrue('stow' in sample) |
| 262 self.assertTrue('retrieve' in sample) | |
| 263 self.assertTrue('get' in sample) | |
| 244 | 264 self.assertTrue('wado' in sample) # New in 0.7 |
| 265 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 266 |
| 267 # application/dicom+xml | |
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268 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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269 headers = { 'Accept' : 'application/dicom+xml' }), |
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270 re.MULTILINE))) |
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271 self.assertEqual(2, len(re.findall('^--', DoPost |
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272 (ORTHANC, '/dicom-web/servers/sample/get', |
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273 { 'Uri' : '/studies', |
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274 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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275 }), re.MULTILINE))) |
| 84 | 276 |
| 277 # application/dicom+json | |
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278 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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279 headers = { 'Accept' : 'application/dicom+json' }))) |
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280 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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281 { 'Uri' : '/studies', |
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282 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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283 |
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284 # application/json |
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285 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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286 headers = { 'Accept' : 'application/json' }))) |
| 84 | 287 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 288 { 'Uri' : '/studies', | |
| 289 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 290 | |
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291 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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292 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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293 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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294 { 'Uri' : '/studies' }))) |
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295 |
| 84 | 296 |
| 297 def test_server_stow(self): | |
| 298 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 299 | |
| 300 self.assertRaises(Exception, lambda: | |
| 301 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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302 { 'Resources' : [ 'nope' ], |
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303 'Synchronous' : True })) # inexisting resource |
| 84 | 304 |
| 499 | 305 l = 3 # For >= 1.10.1 |
| 306 | |
| 307 # study | |
| 308 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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309 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
| 499 | 310 'Synchronous' : True }) |
| 311 | |
| 312 self.assertEqual(l, len(r)) | |
| 313 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 84 | 314 |
| 499 | 315 # series |
| 316 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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317 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
| 499 | 318 'Synchronous' : True }) |
| 319 self.assertEqual(l, len(r)) | |
| 320 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 84 | 321 |
| 499 | 322 # instances |
| 323 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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324 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 325 'Synchronous' : True }) |
| 326 self.assertEqual(l, len(r)) | |
| 327 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 84 | 328 |
| 499 | 329 # altogether |
| 330 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 84 | 331 { 'Resources' : [ |
| 332 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 333 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 334 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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335 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 336 'Synchronous' : True }) |
| 510 | 337 # pprint.pprint(r) |
| 499 | 338 self.assertEqual(l, len(r)) |
| 339 self.assertEqual("ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17", r['Resources']['Patients'][0]) | |
| 340 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 341 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 342 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 343 | |
| 84 | 344 |
| 345 | |
| 346 def test_server_retrieve(self): | |
| 244 | 347 COUNT = 'ReceivedInstancesCount' |
| 348 #COUNT = 'Instances' # In version <= 0.6 | |
| 349 | |
| 84 | 350 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 351 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 352 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 353 | |
| 354 self.assertRaises(Exception, lambda: | |
| 355 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 356 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 357 | |
| 358 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 359 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 360 self.assertEqual(3, int(t[COUNT])) |
| 84 | 361 |
| 362 # Missing "Study" field | |
| 363 self.assertRaises(Exception, lambda: | |
| 364 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 365 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 366 | |
| 367 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 368 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 369 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 370 self.assertEqual(2, int(t[COUNT])) |
| 84 | 371 |
| 372 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 373 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 374 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 375 self.assertEqual(1, int(t[COUNT])) |
| 84 | 376 |
| 377 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 378 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 379 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 380 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 381 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 382 self.assertEqual(3, int(t[COUNT])) |
| 84 | 383 |
| 384 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 385 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 386 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 387 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 388 self.assertEqual(1, int(t[COUNT])) |
| 84 | 389 |
| 390 | |
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391 def test_bitbucket_issue_53(self): |
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392 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
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393 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=53 |
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394 |
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395 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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396 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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397 |
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398 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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399 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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400 |
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401 a = DoGet(ORTHANC, '/dicom-web/studies', |
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402 headers = { 'accept' : 'application/json' }) |
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403 self.assertEqual(2, len(a)) |
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404 |
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405 b = [] |
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406 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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407 headers = { 'accept' : 'application/json' }) |
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408 self.assertEqual(1, len(a)) |
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409 b.append(a[0]['0020000D']['Value'][0]) |
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410 |
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411 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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412 headers = { 'accept' : 'application/json' }) |
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413 self.assertEqual(1, len(a)) |
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414 b.append(a[0]['0020000D']['Value'][0]) |
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415 |
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416 self.assertTrue(brainix in b) |
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417 self.assertTrue(knee in b) |
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418 |
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419 |
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420 def test_bitbucket_issue_111(self): |
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421 # Wrong serialization of empty values |
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422 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=111 |
| 319 | 423 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 |
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424 |
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425 # According to the standard, section F.2.5 |
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426 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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427 # null values behave as follows: If an attribute is present in |
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428 # DICOM but empty (i.e., Value Length is 0), it shall be |
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429 # preserved in the DICOM JSON attribute object containing no |
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430 # "Value", "BulkDataURI" or "InlineBinary". |
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431 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=111 |
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432 |
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433 UploadInstance(ORTHANC, 'Issue111.dcm') |
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434 |
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435 # Test WADO-RS |
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436 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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437 self.assertEqual(1, len(a)) |
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438 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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439 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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440 self.assertEqual('SH', a[0]['00080050']['vr']) |
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441 |
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442 # Test QIDO-RS |
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443 a = DoGet(ORTHANC, '/dicom-web/studies') |
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444 self.assertEqual(1, len(a)) |
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445 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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446 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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447 self.assertEqual('SH', a[0]['00080050']['vr']) |
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448 |
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449 |
| 537 | 450 # this test fails if SeriesMetadata = "MainDicomTags" (this is expected since the reference json is the full json) |
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451 def test_wado_hierarchy(self): |
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452 def CheckJson(uri, headers = {}): |
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453 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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454 expected = json.loads(f.read()) |
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455 actual = DoGet(ORTHANC, uri, headers) |
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456 self.assertEqual(1, len(actual)) |
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457 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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458 |
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459 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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460 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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461 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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462 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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463 |
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464 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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465 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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466 headers = { 'accept' : 'application/nope' })) |
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467 |
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468 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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469 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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470 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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471 |
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472 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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473 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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474 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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475 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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476 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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477 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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478 |
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479 |
| 228 | 480 def test_wado_pixel_data(self): |
| 481 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 482 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 483 self.assertEqual(1, len(a)) | |
| 484 url = a[0]['00081190']['Value'][0] | |
| 485 | |
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486 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 487 self.assertTrue(url.startswith(prefix)) |
| 488 | |
| 489 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 490 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 491 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 492 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 493 | |
| 494 url = b[0]['7FE00010']['BulkDataURI'] | |
| 495 self.assertTrue(url.startswith(prefix)) | |
| 496 | |
| 497 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 498 | |
| 499 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 500 self.assertEqual(4, len(p[0])) | |
| 501 self.assertEqual(114486, len(p[1])) | |
| 502 | |
| 503 | |
| 504 def test_wado_hierarchy_bulk(self): | |
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505 def CheckBulk(value, bulk): |
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506 self.assertEqual(2, len(value)) |
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507 self.assertTrue('BulkDataURI' in value) |
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508 self.assertTrue('vr' in value) |
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509 self.assertEqual(value['BulkDataURI'], bulk) |
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510 |
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511 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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512 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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513 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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514 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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515 |
| 228 | 516 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 319 | 517 # the following fix was not included yet: |
| 586 | 518 # https://orthanc.uclouvain.be/hg/orthanc/rev/b88937ef597b |
| 228 | 519 |
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520 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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521 self.assertEqual(1, len(a)) |
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522 |
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523 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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524 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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525 |
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526 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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527 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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528 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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529 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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530 |
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531 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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532 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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533 |
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534 self.assertEqual(12288, len(b)) |
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535 self.assertEqual(1, len(c)) |
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536 self.assertEqual(b, c[0]) |
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537 |
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538 |
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539 def test_bitbucket_issue_112(self): |
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540 # Wrong serialization of number values |
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541 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=112 |
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542 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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543 |
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544 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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545 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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546 |
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547 # This is the WADO-RS testing |
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548 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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549 self.assertEqual(1, len(a)) |
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550 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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551 |
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552 if (sys.version_info >= (3, 0)): |
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553 types = (int) |
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554 else: |
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555 types = (int, long) |
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556 |
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557 b = a[0]['00180091']['Value'][0] |
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558 self.assertTrue(isinstance(b, types)) |
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559 self.assertEqual(10, b) |
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560 |
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561 # This is the QIDO-RS testing |
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562 a = DoGet(ORTHANC, '/dicom-web/studies') |
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563 self.assertEqual(1, len(a)) |
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564 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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565 |
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566 b = a[0]['00201208']['Value'][0] |
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567 self.assertTrue(isinstance(b, types)) |
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568 self.assertEqual(1, b) |
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569 |
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570 |
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571 def test_bitbucket_issue_113(self): |
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572 # Wrong serialization of PN VR |
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573 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=113 |
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574 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
| 314 | 575 |
| 576 # Make sure UTF-8 encoding is used | |
| 577 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
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578 |
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579 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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580 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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581 |
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582 # This is the WADO-RS testing |
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583 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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584 self.assertEqual(1, len(a)) |
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585 |
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586 pn = a[0]['00100010'] # Patient name |
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587 self.assertEqual('PN', pn['vr']) |
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588 self.assertEqual(1, len(pn['Value'])) |
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589 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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590 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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591 |
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592 # This is the QIDO-RS testing |
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593 a = DoGet(ORTHANC, '/dicom-web/studies') |
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594 self.assertEqual(1, len(a)) |
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595 |
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596 pn = a[0]['00100010'] # Patient name |
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597 self.assertEqual('PN', pn['vr']) |
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598 self.assertEqual(1, len(pn['Value'])) |
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599 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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600 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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601 |
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602 |
| 225 | 603 def test_bitbucket_issue_96(self): |
| 604 # WADO-RS RetrieveFrames rejects valid accept headers | |
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605 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=96 |
| 225 | 606 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
| 607 | |
| 228 | 608 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 609 |
| 610 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 611 self.assertEqual(1, len(a)) | |
| 228 | 612 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 613 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 614 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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615 |
| 225 | 616 url = a[0]['00081190']['Value'][0] |
| 617 | |
|
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618 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 619 self.assertTrue(url.startswith(prefix)) |
| 620 uri = url[len(prefix):] | |
| 621 | |
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622 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 623 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 624 | |
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625 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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626 self.assertEqual(1, len(b)) |
| 228 | 627 self.assertEqual(256 * 256 * 2, len(b[0])) |
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628 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
| 225 | 629 |
| 228 | 630 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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631 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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632 self.assertEqual(1, len(c)) |
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633 self.assertEqual(b[0], c[0]) |
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634 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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635 |
| 228 | 636 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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637 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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638 self.assertEqual(1, len(c)) |
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639 self.assertEqual(b[0], c[0]) |
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640 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
|
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641 |
| 228 | 642 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 643 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 644 | |
| 645 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 646 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 647 | |
| 648 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 649 headers = { 'Accept' : 'nope' })) | |
| 650 | |
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651 |
| 608 | 652 def test_bugzilla_219(self): |
| 653 # WADO-RS RetrieveFrames shall transcode ExplicitBigEndian to ExplicitLittleEndian | |
| 654 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=219 | |
| 655 | |
| 656 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 17, 0): | |
| 657 | |
| 658 UploadInstance(ORTHANC, 'TransferSyntaxes/1.2.840.10008.1.2.2.dcm') | |
| 659 | |
| 660 r = DoGetMultipart(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.21.848.246800003.0.1952805748.3/series/1.2.840.113619.2.21.24680000.700.0.1952805748.3.0/instances/1.2.840.1136190195280574824680000700.3.0.1.19970424140438/frames/1', {}, True ) | |
| 661 self.assertIn('transfer-syntax=1.2.840.10008.1.2.1', r[0][1]['Content-Type']) | |
| 662 | |
| 663 | |
|
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664 def test_qido_fields(self): |
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665 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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666 |
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667 a = DoGet(ORTHANC, '/dicom-web/studies') |
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668 self.assertEqual(1, len(a)) |
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669 self.assertFalse('00280010' in a[0]) # Rows |
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670 |
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671 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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672 self.assertEqual(1, len(a)) |
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673 self.assertTrue('00280010' in a[0]) |
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674 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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675 |
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676 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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677 self.assertEqual(0, len(a)) |
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678 |
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679 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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680 self.assertEqual(1, len(a)) |
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681 self.assertTrue('00280010' in a[0]) |
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682 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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683 |
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684 |
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685 def test_stow_errors(self): |
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686 def CheckSequences(a): |
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687 self.assertEqual(3, len(a)) |
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688 self.assertTrue('00080005' in a) |
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689 self.assertTrue('00081198' in a) |
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690 self.assertTrue('00081199' in a) |
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691 self.assertEqual('CS', a['00080005']['vr']) |
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692 self.assertEqual('SQ', a['00081198']['vr']) |
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693 self.assertEqual('SQ', a['00081199']['vr']) |
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694 |
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695 # Pushing an instance to a study that is not its parent |
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696 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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697 self.assertEqual(409, status) |
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698 CheckSequences(a) |
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699 |
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700 self.assertFalse('Value' in a['00081199']) # No success instance |
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701 |
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702 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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703 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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704 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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705 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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706 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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707 self.assertEqual(0x0110, # Processing failure |
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708 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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709 |
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710 # Pushing an instance with missing tags |
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711 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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712 self.assertEqual(400, status) |
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713 CheckSequences(a) |
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714 |
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715 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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716 self.assertFalse('Value' in a['00081199']) # No success instance |
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717 |
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718 # Pushing a file that is not in the DICOM format |
|
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719 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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720 self.assertEqual(400, status) |
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721 CheckSequences(a) |
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722 |
|
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723 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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724 self.assertFalse('Value' in a['00081199']) # No success instance |
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|
725 |
|
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726 # Pushing a DICOM instance with only SOP class and instance UID |
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727 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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728 self.assertEqual(400, status) |
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729 CheckSequences(a) |
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|
730 |
|
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731 self.assertFalse('Value' in a['00081199']) # No success instance |
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|
732 |
|
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|
733 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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734 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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735 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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736 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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737 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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738 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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739 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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740 |
|
239
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741 |
|
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742 def test_allowed_methods(self): |
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743 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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744 |
|
549
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|
745 e = DoPutRaw(ORTHANC, '/dicom-web/studies') |
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746 self.assertEqual(405, int(e[0]['status'])) |
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747 self.assertEqual('GET,POST', e[0]['allow']) |
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748 |
|
549
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changeset
|
749 e = DoDeleteRaw(ORTHANC, '/dicom-web/studies') |
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750 self.assertEqual(405, int(e[0]['status'])) |
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751 self.assertEqual('GET,POST', e[0]['allow']) |
|
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752 |
|
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753 |
|
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754 def test_add_server(self): |
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755 try: |
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756 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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757 except: |
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758 pass |
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759 |
| 277 | 760 try: |
| 761 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 762 except: | |
| 763 pass | |
| 764 | |
|
241
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765 l = DoGet(ORTHANC, '/dicom-web/servers') |
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766 self.assertEqual(1, len(l)) |
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767 self.assertTrue('sample' in l) |
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768 |
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769 url = 'http://localhost:8042/dicom-web/' |
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770 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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771 'Url': url, |
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772 'HttpHeaders' : { |
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773 'Hello' : 'World' |
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774 }, |
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775 'Username' : 'bob', |
| 242 | 776 'Password' : 'password', |
| 777 'UserProperty' : 'Test', | |
|
249
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778 'HasDelete' : True, |
|
381
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779 'Timeout' : 66 # New in 1.6 |
|
241
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780 }) |
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781 |
|
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782 l = DoGet(ORTHANC, '/dicom-web/servers') |
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783 self.assertEqual(2, len(l)) |
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784 self.assertTrue('sample' in l) |
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785 self.assertTrue('hello' in l) |
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786 |
|
249
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787 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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788 self.assertEqual(5, len(o)) |
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789 self.assertTrue('stow' in o) |
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790 self.assertTrue('retrieve' in o) |
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791 self.assertTrue('get' in o) |
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792 self.assertTrue('wado' in o) # New in 0.7 |
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793 self.assertTrue('qido' in o) # New in 0.7 |
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794 |
|
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795 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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796 self.assertEqual(6, len(o)) |
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797 self.assertTrue('stow' in o) |
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798 self.assertTrue('retrieve' in o) |
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799 self.assertTrue('get' in o) |
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800 self.assertTrue('wado' in o) # New in 0.7 |
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801 self.assertTrue('qido' in o) # New in 0.7 |
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802 self.assertTrue('delete' in o) # New in 0.7 |
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803 |
|
241
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804 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
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805 self.assertEqual(8, len(s['hello'])) |
|
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806 self.assertEqual(url, s['hello']['Url']) |
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807 self.assertEqual('bob', s['hello']['Username']) |
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808 self.assertEqual(None, s['hello']['Password']) |
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809 self.assertFalse(s['hello']['Pkcs11']) |
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810 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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811 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 812 self.assertEqual('Test', s['hello']['UserProperty']) |
|
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813 self.assertEqual('1', s['hello']['HasDelete']) |
|
388
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814 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
|
241
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815 |
|
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816 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
246
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817 |
|
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818 |
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819 def test_bitbucket_issue_143(self): |
|
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820 # WADO-RS metadata request returns "500 Internal Server Error" |
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821 # instead of "404 Not Found" for missing instance |
|
588
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822 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=143 |
|
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823 UploadInstance(ORTHANC, 'Issue143.dcm') |
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824 |
|
549
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825 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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|
826 self.assertEqual(404, int(e[0]['status'])) |
|
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827 |
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828 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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829 |
|
549
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830 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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831 self.assertEqual(404, int(e[0]['status'])) |
|
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832 |
|
549
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833 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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|
834 self.assertEqual(404, int(e[0]['status'])) |
|
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835 |
|
549
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|
836 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
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|
837 self.assertEqual(404, int(e[0]['status'])) |
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838 |
|
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839 |
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840 def test_encodings_qido(self): |
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841 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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842 # in the integration tests, so all the QIDO-RS requests must |
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843 # lead to a "ISO_IR 192" specific character set |
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844 def GetPatientName(dicom, onlyAlphabetic): |
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845 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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846 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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847 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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848 self.assertEqual(1, len(qido)) |
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849 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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850 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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851 if onlyAlphabetic: |
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852 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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853 else: |
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854 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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855 return qido[0]['00100010']['Value'][0] |
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856 |
| 314 | 857 # Make sure UTF-8 encoding is used |
| 858 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
| 859 | |
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860 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
|
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861 |
|
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862 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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863 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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864 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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865 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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866 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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867 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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868 |
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869 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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870 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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871 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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872 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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873 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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874 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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875 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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876 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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877 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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878 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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879 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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880 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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881 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
|
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882 |
|
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883 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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884 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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885 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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886 |
|
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|
887 |
|
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888 def test_encodings_wado_metadata(self): |
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889 # If querying the instance metadata, the "DefaultEncoding" |
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890 # configuration is not used, but the actual encoding |
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891 def GetEncoding(dicom, length): |
|
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892 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
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893 self.assertEqual(1, len(qido)) |
|
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894 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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895 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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896 return qido[0]['00080005']['Value'] |
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|
897 |
|
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898 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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899 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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900 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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901 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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902 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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903 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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904 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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|
905 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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906 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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907 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
|
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908 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
|
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|
909 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
|
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|
910 |
|
249
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|
911 |
|
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|
912 def test_rendered(self): |
|
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|
913 def RenderFrame(path, i): |
|
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|
914 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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915 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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916 }) |
|
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|
917 |
|
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|
918 # This image has 76 frames |
|
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|
919 path = UploadAndGetWadoPath('Multiframe.dcm') |
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920 |
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|
921 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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922 |
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923 frame1 = RenderFrame(path, 1) |
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924 im = UncompressImage(frame1) |
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925 self.assertEqual("L", im.mode) |
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926 self.assertEqual(512, im.size[0]) |
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927 self.assertEqual(512, im.size[1]) |
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928 |
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929 im = UncompressImage(RenderFrame(path, 76)) |
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930 self.assertEqual("L", im.mode) |
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931 self.assertEqual(512, im.size[0]) |
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932 self.assertEqual(512, im.size[1]) |
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|
933 |
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934 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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|
935 |
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936 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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937 'Uri' : '%s/rendered' % path |
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938 }) |
|
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939 |
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940 self.assertEqual(len(frame1), len(defaultFrame)) |
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941 self.assertEqual(frame1, defaultFrame) |
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942 |
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943 |
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944 # This image has 1 frame |
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945 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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946 |
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947 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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948 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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949 |
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950 frame1 = RenderFrame(path, 1) |
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951 im = UncompressImage(frame1) |
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952 self.assertEqual("L", im.mode) |
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953 self.assertEqual(512, im.size[0]) |
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954 self.assertEqual(358, im.size[1]) |
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955 |
|
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956 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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957 'Uri' : '%s/rendered' % path |
|
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958 }) |
|
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959 |
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960 self.assertEqual(len(frame1), len(defaultFrame)) |
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961 self.assertEqual(frame1, defaultFrame) |
|
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962 |
|
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|
963 |
|
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|
964 def test_qido_parent_attributes(self): |
|
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965 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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966 study = '2.16.840.1.113669.632.20.1211.10000357775' |
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967 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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968 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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|
969 |
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970 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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971 self.assertEqual(1, len(a)) |
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972 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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973 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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974 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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975 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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976 |
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977 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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978 self.assertEqual(1, len(a)) |
|
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979 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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980 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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981 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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982 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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983 |
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984 a = DoGet(ORTHANC, '/dicom-web/series') |
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985 self.assertEqual(1, len(a)) |
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986 self.assertFalse('00080018' in a[0]) |
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987 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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988 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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989 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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990 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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|
991 |
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992 a = DoGet(ORTHANC, '/dicom-web/instances') |
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993 self.assertEqual(1, len(a)) |
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994 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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995 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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996 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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997 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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998 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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999 |
|
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1000 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
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1001 self.assertEqual(1, len(a)) |
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1002 self.assertFalse('00080018' in a[0]) |
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1003 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1004 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1005 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1006 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1007 |
|
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1008 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
|
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1009 self.assertEqual(1, len(a)) |
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1010 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1011 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1012 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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1013 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1014 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1015 |
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1016 # "If {StudyInstanceUID} is not specified, all Study-level |
|
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1017 # attributes specified in Table 6.7.1-2" => Here, |
|
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1018 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
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1019 # PatientName. |
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1020 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
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1021 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
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1022 self.assertEqual(1, len(a)) |
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1023 self.assertFalse('00100010' in a[0]) # PatientName |
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1024 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1025 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1026 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1027 |
| 487 | 1028 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1029 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1030 self.assertEqual(1, len(a)) | |
| 1031 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1032 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1033 | |
| 1034 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
| 1035 a = DoGet(ORTHANC, '/dicom-web/series') | |
| 1036 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1037 | |
|
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1038 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
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1039 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
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1040 self.assertEqual(1, len(a)) |
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1041 self.assertFalse('00100010' in a[0]) # PatientName |
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1042 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1043 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1044 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1045 |
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1046 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
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1047 self.assertEqual(1, len(a)) |
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1048 self.assertFalse('00080060' in a[0]) # Modality |
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1049 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1050 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1051 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1052 |
|
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1053 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
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1054 self.assertEqual(1, len(a)) |
|
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|
1055 self.assertFalse('00100010' in a[0]) # PatientName |
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1056 self.assertFalse('00080060' in a[0]) # Modality |
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1057 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1058 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
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|
1059 |
| 487 | 1060 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1061 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1062 self.assertEqual(1, len(a)) | |
| 1063 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1064 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1065 | |
| 1066 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
| 1067 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 1068 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1069 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1070 self.assertTrue('00080060' in a[0]) # Modality | |
| 1071 | |
|
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1072 |
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1073 #@unittest.skip("Skip this test on GDCM 2.8.4") |
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1074 def test_bitbucket_issue_164(self): |
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1075 # WARNING - This makes GDCM 2.8.4 crash |
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1076 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=164 |
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1077 UploadInstance(ORTHANC, 'Issue164.dcm') |
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1078 |
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1079 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
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1080 self.assertEqual(1, len(p)) |
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1081 self.assertEqual(743 * 975 * 3, len(p[0])) |
| 304 | 1082 |
|
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1083 metadata = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/metadata') |
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1084 self.assertEqual("YBR_FULL_422", metadata[0]['00280004']['Value'][0]) |
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1085 |
| 543 | 1086 # TODO |
| 1087 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1088 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1): | |
| 1089 # expectedDcmtkChecksum = '7535a11e7da0fa590c467ac9d323c5c1' | |
| 1090 # else: | |
| 1091 expectedDcmtkChecksum = 'b3662c4bfa24a0c73abb08548c63319b' | |
|
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1092 |
| 304 | 1093 if HasGdcmPlugin(ORTHANC): |
| 1094 self.assertTrue(ComputeMD5(p[0]) in [ | |
| 1095 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
|
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1096 expectedDcmtkChecksum # Fallback to DCMTK |
| 304 | 1097 ]) |
| 1098 else: | |
|
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1099 self.assertEqual(expectedDcmtkChecksum, ComputeMD5(p[0])) # DCMTK |
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1100 |
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1101 |
| 271 | 1102 def test_bitbucket_issue_168(self): |
| 276 | 1103 # "Plugins can't read private tags from the configuration |
| 1104 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1105 # 16.04), or if Orthanc <= 1.5.8 | |
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1106 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=168 |
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1107 |
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1108 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1109 |
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1110 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1111 self.assertEqual(1, len(a)) |
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1112 self.assertFalse('00090010' in a[0]) |
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1113 self.assertFalse('00091001' in a[0]) |
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1114 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1115 |
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1116 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1117 self.assertEqual(1, len(a)) |
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1118 self.assertFalse('00090010' in a[0]) |
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1119 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
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1120 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1121 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1122 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1123 |
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1124 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1125 self.assertEqual(1, len(a)) |
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1126 self.assertTrue('00090010' in a[0]) |
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1127 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1128 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1129 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1130 self.assertTrue('00091001' in a[0]) |
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1131 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1132 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1133 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
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1134 |
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1135 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1136 self.assertEqual(0, len(a)) |
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1137 |
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1138 |
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1139 def test_rendered_studies_series(self): |
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1140 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1141 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1142 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1143 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1144 |
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1145 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1146 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1147 }) |
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1148 |
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1149 im = UncompressImage(a) |
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1150 self.assertEqual("L", im.mode) |
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1151 self.assertEqual(512, im.size[0]) |
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1152 self.assertEqual(358, im.size[1]) |
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1153 |
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1154 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1155 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1156 }) |
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1157 |
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1158 self.assertEqual(len(a), len(b)) |
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1159 self.assertEqual(a, b) |
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1160 |
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1161 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1162 'Uri' : '/studies/%s/rendered' % study |
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1163 }) |
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1164 |
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1165 self.assertEqual(len(a), len(c)) |
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1166 self.assertEqual(a, c) |
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1167 |
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1168 |
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1169 def test_multiple_mime_accept_wado_rs(self): |
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1170 # "Multiple MIME type Accept Headers for Wado-RS" |
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1171 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1172 |
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1173 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1174 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1175 |
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1176 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1177 |
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1178 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1179 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1181 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1182 headers = { 'Accept' : 'application/json' }))) |
| 1183 | |
| 1184 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1185 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1186 | |
| 1187 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
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1188 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1189 |
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1190 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1191 headers = { 'Accept' : 'application/json, tata' }))) |
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1192 |
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1193 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1194 headers = { 'Accept' : 'toto' })) |
| 1195 | |
| 1196 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1197 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1198 |
| 1199 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1200 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1201 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1202 | |
| 1203 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1204 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1205 | |
| 1206 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1207 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
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1208 |
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1209 |
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1210 |
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1211 def test_bitbucket_issue_56(self): |
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1212 # "Case-insensitive matching over accents" => DICOMweb part |
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1213 # from AlexanderM on 2020-03-20 |
|
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1214 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=56 |
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1215 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1216 |
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1217 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1218 'Level' : 'Patient', |
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1219 'Query' : { |
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1220 'PatientName' : 'Гусева*', |
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1221 }, |
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1222 }))) |
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1223 |
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1224 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1225 'Level' : 'Patient', |
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1226 'Query' : { |
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1227 'PatientName' : 'гусева*', |
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1228 }, |
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1229 }))) |
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1230 |
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1231 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1232 headers = { 'accept' : 'application/json' }))) |
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1233 |
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1234 # This line is the issue |
|
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1235 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1236 headers = { 'accept' : 'application/json' }))) |
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1237 |
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1238 |
|
318
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1239 def test_frames_transcoding(self): |
|
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1240 ACCEPT = { |
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1241 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1242 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1243 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1244 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1245 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1246 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1247 } |
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1248 |
|
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1249 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
|
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1250 truthRGB = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
| 543 | 1251 |
| 1252 # TODO | |
| 1253 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1254 # with open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.YBR.raw'), 'rb') as f: | |
| 1255 # truthRawYbr = f.read() | |
|
539
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1256 |
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1257 # first test: no transcoding since we accept the JPEG transfer syntax |
|
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1258 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1259 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1260 returnHeaders = True) |
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1261 self.assertEqual(1, len(a)) |
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1262 self.assertEqual(2, len(a[0])) |
|
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1263 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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1264 a[0][1]['Content-Location']) |
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1265 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1266 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1267 self.assertEqual(53476, len(a[0][0])) |
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1268 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1269 |
|
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1270 # second test: no accept header -> defaults to raw explicit |
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1271 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1272 self.assertEqual(1, len(a)) |
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1273 self.assertEqual(480 * 640 * 3, len(a[0])) |
| 304 | 1274 |
|
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1275 # Orthanc is now returning the YBR image instead of the RGB |
| 543 | 1276 # TODO |
| 1277 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1278 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1) and not HasGdcmPlugin(ORTHANC): | |
| 1279 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1280 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1281 # else: | |
| 1282 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1283 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1284 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1285 |
|
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1286 ACCEPT2 = copy.deepcopy(ACCEPT) |
| 304 | 1287 if HasGdcmPlugin(ORTHANC): |
|
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1288 IS_GDCM = True |
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1289 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1290 del ACCEPT2['1.2.840.10008.1.2'] |
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1291 else: |
|
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1292 if not IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
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1293 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1294 IS_GDCM = False |
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1295 |
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1296 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1297 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1298 self.assertEqual(1, len(a)) |
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1299 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1300 |
| 543 | 1301 # TODO |
| 1302 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1303 # if IsOrthancVersionAbove(ORTHANC, 1, XX, X) and not HasGdcmPlugin(ORTHANC): | |
| 1304 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1305 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1306 # else: | |
| 1307 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1308 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1309 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1310 |
| 543 | 1311 # TODO: if not IS_GDCM and not IsOrthancVersionAbove(ORTHANC, 1, XX, X): |
| 1312 if not IS_GDCM: | |
|
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1313 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1314 |
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1315 |
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1316 # Test download using the same transfer syntax |
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1317 RESULTS = { |
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1318 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1319 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1320 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1321 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1322 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1323 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1324 } |
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1325 |
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1326 if IS_GDCM: |
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1327 # This file was failing with GDCM, as it has 2 fragments, |
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1328 # and only the first one was returned => the MD5 below is BAD |
| 304 | 1329 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
| 1330 pass | |
| 1331 | |
|
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1332 for syntax in ACCEPT2: |
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1333 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1334 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1335 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1336 self.assertEqual(1, len(a)) |
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1337 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1338 |
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1339 # Test transcoding to all the possible transfer syntaxes |
|
321
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1340 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
|
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|
1341 for syntax in ACCEPT2: |
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|
1342 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1343 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1344 returnHeaders = True) |
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1345 self.assertEqual(1, len(a)) |
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1346 self.assertEqual(2, len(a[0])) |
|
321
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1347 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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|
1348 a[0][1]['Content-Location']) |
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1349 self.assertEqual(ACCEPT[syntax], |
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1350 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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|
1351 if IS_GDCM: |
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|
1352 self.assertEqual({ |
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|
1353 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1354 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1355 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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|
1356 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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|
1357 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
|
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|
1358 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
|
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|
1359 } [syntax], ComputeMD5(a[0][0])) |
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|
1360 else: |
|
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|
1361 self.assertEqual({ |
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|
1362 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1363 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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|
1364 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
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|
1365 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
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|
1366 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
|
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|
1367 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
|
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|
1368 } [syntax], ComputeMD5(a[0][0])) |
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|
1369 |
|
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|
1370 |
|
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|
1371 # JPEG image with many fragments for 2 frames |
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|
1372 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
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|
1373 |
|
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|
1374 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1375 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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|
1376 self.assertEqual(1, len(a)) |
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1377 self.assertEqual(69214, len(a[0])) |
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1378 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
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1379 |
|
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1380 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
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1381 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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|
1382 self.assertEqual(1, len(b)) |
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1383 self.assertEqual(a[0], b[0]) |
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1384 |
|
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1385 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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1386 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1387 self.assertEqual(2, len(b)) |
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1388 self.assertEqual(a[0], b[0]) |
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1389 self.assertEqual(a[0], b[1]) |
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1390 |
|
318
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|
1391 |
|
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|
1392 def test_wado_transcoding(self): |
|
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1393 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
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1394 |
|
367
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1395 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
|
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1396 |
|
318
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|
1397 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
|
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|
1398 headers = { 'Accept' : 'nope' })) |
|
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1399 |
|
367
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|
1400 # Up to release 1.5 of the DICOMweb plugin, if no |
|
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|
1401 # transfer-syntax was specified, no transcoding occured. This |
|
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1402 # was because of an undefined behavior up to DICOM |
|
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1403 # 2016b. Starting with DICOM 2016c, the standard explicitly |
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1404 # states that the image should be transcoded to Little Endian |
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1405 # Explicit. |
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1406 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1407 headers = { }) |
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1408 self.assertEqual(1, len(a)) |
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1409 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1410 self.assertTrue(10 * compressedSize < len(a[0])) |
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1411 uncompressedSize = len(a[0]) |
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1412 |
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1413 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1414 headers = { 'Accept' : 'multipart/related' }) |
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1415 self.assertEqual(1, len(a)) |
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1416 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1417 self.assertEqual(uncompressedSize, len(a[0])) |
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1418 |
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1419 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1420 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1421 self.assertEqual(1, len(a)) |
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1422 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1423 self.assertEqual(uncompressedSize, len(a[0])) |
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1424 |
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1425 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1426 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1427 self.assertEqual(1, len(a)) |
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1428 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1429 self.assertEqual(compressedSize, len(a[0])) |
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1430 |
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1431 # Use source transfer syntax |
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1432 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1433 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1434 self.assertEqual(1, len(a)) |
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1435 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1436 self.assertEqual(compressedSize, len(a[0])) |
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1437 |
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1438 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1439 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1440 self.assertEqual(1, len(a)) |
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1441 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1442 self.assertEqual(uncompressedSize, len(a[0])) |
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1443 |
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1444 # Transcoding |
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1445 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1446 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1447 self.assertEqual(1, len(a)) |
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1448 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1449 self.assertNotEqual(compressedSize, len(a[0])) |
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1450 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1451 |
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1452 |
|
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1453 def test_compare_wado_uri_and_rs(self): |
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1454 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1455 |
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1456 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1457 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1458 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1459 |
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1460 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1461 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1462 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1463 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1464 |
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1465 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1466 truth = UncompressImage(f.read()) |
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1467 |
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1468 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1469 self.assertEqual('JPEG', im1.format) |
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1470 |
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1471 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1472 self.assertEqual('PNG', im2.format) |
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1473 |
|
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1474 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
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1475 self.assertEqual('JPEG', im3.format) |
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1476 |
|
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1477 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
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1478 headers = { 'Accept' : 'image/png' }) |
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1479 self.assertEqual('PNG', im4.format) |
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1480 |
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1481 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1482 self.assertEqual('JPEG', im5.format) |
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1483 |
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1484 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1485 self.assertEqual('PNG', im6.format) |
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1486 |
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1487 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1488 self.assertEqual('L', im.mode) |
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1489 self.assertEqual(512, im.size[0]) |
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1490 self.assertEqual(512, im.size[1]) |
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1491 |
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1492 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1493 # was redirecting to the "/preview" route of Orthanc |
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1494 # http://effbot.org/zone/pil-comparing-images.htm |
|
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1495 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1496 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1497 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1498 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
|
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1499 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1500 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
| 345 | 1501 |
| 1502 bbox = ImageChops.difference(im2, truth).getbbox() | |
| 346 | 1503 if bbox != None: |
| 1504 # Tolerance of just 1 pixel of difference (needed on Windows) | |
| 1505 #print(im2.getpixel((238,275))) # => 255 | |
| 1506 #print(truth.getpixel((238,275))) # => 254 | |
| 1507 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
| 1508 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
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1509 |
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1510 |
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1511 def test_issue_195(self): |
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1512 # This fails on Orthanc <= 1.9.2 |
|
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1513 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=195 |
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1514 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1515 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1516 headers = { 'Accept' : 'application/dicom+json' }) |
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1517 |
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1518 self.assertEqual(1, len(b)) |
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1519 self.assertEqual(5, len(b[0])) |
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1520 |
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1521 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1522 self.assertEqual(2, len(b[0]["00080018"])) |
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1523 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1524 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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1525 b[0]["00080018"]["Value"][0]) |
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1526 |
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1527 self.assertEqual(2, len(b[0]["0020000D"])) |
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1528 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1529 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
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1530 b[0]["0020000D"]["Value"][0]) |
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1531 |
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1532 self.assertEqual(2, len(b[0]["0020000E"])) |
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1533 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1534 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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1535 b[0]["0020000E"]["Value"][0]) |
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1536 |
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1537 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1538 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1539 |
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1540 self.assertEqual(2, len(b[0]["0008103E"])) |
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1541 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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1542 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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1543 |
|
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1544 |
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1545 DoDelete(ORTHANC, 'instances/%s' % a) |
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1546 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
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1547 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
|
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1548 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1549 headers = { 'Accept' : 'application/dicom+json' }) |
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1550 |
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|
1551 self.assertEqual(1, len(b)) |
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1552 self.assertEqual(5, len(b[0])) |
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1553 |
|
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1554 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
|
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1555 self.assertEqual(2, len(b[0]["00080018"])) |
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1556 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1557 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
|
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|
1558 b[0]["00080018"]["Value"][0]) |
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1559 |
|
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1560 self.assertEqual(2, len(b[0]["0020000D"])) |
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1561 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1562 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
|
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1563 b[0]["0020000D"]["Value"][0]) |
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1564 |
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1565 self.assertEqual(2, len(b[0]["0020000E"])) |
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1566 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1567 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
|
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1568 b[0]["0020000E"]["Value"][0]) |
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1569 |
|
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1570 self.assertEqual(2, len(b[0]["00084567"])) |
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1571 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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1572 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
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1573 b[0]["00084567"]["BulkDataURI"]) |
|
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1574 |
|
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1575 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
|
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1576 self.assertTrue('Content-Length: 2\r\n' in c) |
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1577 index = c.find('\r\n\r\n') |
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1578 self.assertEqual(0x42, ord(c[index + 4])) |
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1579 self.assertEqual(0x00, ord(c[index + 5])) |
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1580 |
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1581 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
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1582 self.assertEqual(1, len(b[0]["00084565"])) |
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1583 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
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1584 |
|
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1585 |
|
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1586 |
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1587 |
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1588 def test_multiframe_windowing(self): |
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1589 # Fixed in DICOMweb 1.7 |
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1590 def GetLinear(x, c, w): |
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1591 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1592 ymin = 0.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1593 ymax = 255.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1594 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1595 return ymin |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1596 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1597 return ymax |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1598 else: |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1599 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1600 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1601 def GetLinearExact(x, c, w): |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1602 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1603 ymin = 0.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1604 ymax = 255.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1605 if float(x) <= float(c) - float(w) / 2.0: |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1606 return ymin |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1607 elif float(x) > float(c) + float(w) / 2.0: |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1608 return ymax |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1609 else: |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1610 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1611 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1612 def GetSigmoid(x, c, w): |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1613 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1614 ymin = 0.0 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1615 ymax = 255.0 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1616 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1617 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1618 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1619 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1620 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1621 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1622 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1623 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1624 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1625 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1626 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1627 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1628 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1629 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1630 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1631 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1632 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1633 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1634 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1635 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1636 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1637 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1638 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1639 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1640 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1641 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1642 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1643 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1644 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1645 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1646 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1647 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1648 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1649 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1650 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1651 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1652 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1653 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1654 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1655 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1656 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1657 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1658 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1659 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1660 ri = 100.0 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1661 rs = 1.0 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1662 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1663 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1664 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1665 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1666 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1667 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1668 ri = 0.0 |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1669 rs = 2.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1670 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1671 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1672 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1673 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1674 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1675 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1676 ri = 100.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1677 rs = 2.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1678 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
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diff
changeset
|
1679 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
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parents:
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diff
changeset
|
1680 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1681 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
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diff
changeset
|
1682 |
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|
1683 |
| 532 | 1684 def test_forwarded_headers(self): |
| 1685 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
| 1686 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
| 1687 | |
| 1688 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
| 533 | 1689 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) |
| 532 | 1690 |
| 1691 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1692 'host': 'my-domain' | |
| 1693 }) | |
| 1694 self.assertIn("http://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1695 | |
| 1696 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1697 'forwarded': 'host=my-domain;proto=https' | |
| 1698 }) | |
| 1699 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1700 | |
| 1701 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1): | |
| 1702 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1703 'X-Forwarded-Host': 'my-domain', | |
| 1704 'X-Forwarded-Proto': 'https' | |
| 1705 }) | |
| 1706 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1707 | |
| 1708 | |
| 575 | 1709 def test_full_mode_cache(self): |
| 1710 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
| 1711 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
| 1712 | |
| 1713 # wait for the StableSeries to happen to pre-compute the series/metadata | |
| 1714 time.sleep(4) | |
| 1715 | |
| 1716 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
| 1717 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) | |
| 1718 | |
| 1719 | |
|
551
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added test_issue_216 for DICOMweb
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parents:
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diff
changeset
|
1720 def test_issue_216(self): |
|
558
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reactivation of test_issue_216, as the fix is now in the mainline
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diff
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|
1721 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
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|
1722 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
|
0ad170c7b6c8
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parents:
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diff
changeset
|
1723 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1724 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1725 'accept': 'image/webp, */*;q=0.8, text/html, application/xhtml+xml, application/xml;q=0.9' |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1726 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1727 self.assertEqual(1, len(m)) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1728 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1729 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1730 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1731 'accept': 'text/html, application/xhtml+xml, application/xml, image/webp, */*;q=0.8' |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
555
diff
changeset
|
1732 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
555
diff
changeset
|
1733 self.assertEqual(1, len(m)) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1734 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1735 |
| 561 | 1736 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1) and IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
| 1737 # This fails on DICOMweb <= 1.13 because of the "; q=.2", | |
| 1738 # since multiple accepts were not supported | |
|
588
8aa101e126d0
migration to UCLouvain servers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
586
diff
changeset
|
1739 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=216 |
| 561 | 1740 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
| 1741 'accept': 'text/html, image/gif, image/jpeg, */*; q=.2, */*; q=.2' | |
| 1742 }) | |
| 1743 self.assertEqual(1, len(m)) | |
| 1744 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
|
551
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added test_issue_216 for DICOMweb
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parents:
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diff
changeset
|
1745 |
| 561 | 1746 # This fails on Orthanc <= 1.12.0 because of the ";q=0.9" |
| 1747 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { | |
| 1748 'accept': 'text/html, application/xhtml+xml, application/xml;q=0.9, image/webp, */*;q=0.8' | |
| 1749 }) | |
| 1750 self.assertEqual(1, len(m)) | |
| 1751 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
|
558
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diff
changeset
|
1752 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1753 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1754 def test_accept_negotiation(self): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1755 def CheckBadRequest(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1756 response = DoGetRaw(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1757 'accept': accept |
| 552 | 1758 }) |
|
558
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1759 self.assertEqual(int(response[0]['status']), 400) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1760 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1761 def CheckIsJson(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1762 if accept != None: |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1763 response = DoGetRaw(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1764 'accept': accept |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1765 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1766 else: |
|
0ad170c7b6c8
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diff
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|
1767 response = DoGetRaw(ORTHANC, uri) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
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|
1768 self.assertEqual(int(response[0]['status']), 200) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1769 self.assertEqual(response[0]['content-type'], 'application/dicom+json') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1770 json.loads(response[1]) |
|
551
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added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1771 |
|
558
0ad170c7b6c8
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|
1772 def CheckIsXml(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
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|
1773 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
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|
1774 'accept': accept |
|
0ad170c7b6c8
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|
1775 }, returnHeaders = True) |
|
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|
1776 self.assertEqual(1, len(response)) |
|
0ad170c7b6c8
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|
1777 self.assertEqual(2, len(response[0])) |
|
0ad170c7b6c8
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|
1778 self.assertEqual('application/dicom+xml', response[0][1]['Content-Type']) |
|
0ad170c7b6c8
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|
1779 xml.dom.minidom.parseString(response[0][0]) |
| 552 | 1780 |
|
559
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|
1781 def CheckIsDicom(uri, accept): |
|
87fc87897e7e
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|
1782 if accept != None: |
|
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|
1783 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
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|
1784 'accept': accept |
|
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|
1785 }, returnHeaders = True) |
|
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|
1786 else: |
|
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|
1787 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
|
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|
1788 self.assertEqual(1, len(response)) |
|
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|
1789 self.assertEqual(2, len(response[0])) |
|
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|
1790 self.assertEqual('application/dicom', response[0][1]['Content-Type']) |
|
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|
1791 pydicom.dcmread(BytesIO(response[0][0]), force=True) |
|
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|
1792 |
|
560
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|
1793 def CheckIsBulk(uri, accept): |
|
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|
1794 if accept != None: |
|
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|
1795 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
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|
1796 'accept': accept |
|
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|
1797 }, returnHeaders = True) |
|
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|
1798 else: |
|
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|
1799 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
|
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|
1800 self.assertEqual(1, len(response)) |
|
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|
1801 self.assertEqual(2, len(response[0])) |
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|
1802 self.assertEqual('application/octet-stream', response[0][1]['Content-Type']) |
|
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|
1803 self.assertTrue(len(response[0][0]) > 1) |
|
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|
1804 |
|
558
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|
1805 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
|
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|
1806 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
|
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1807 |
|
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|
1808 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, None) |
|
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|
1809 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'application/nope') |
|
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|
1810 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/json') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1811 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/dicom+json') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1812 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1813 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1814 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/dicom+xml"') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1815 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/nope"') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1816 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml; transfer-syntax=nope') |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1817 |
|
559
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1818 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/nope') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1819 CheckIsDicom('/dicom-web/studies/%s' % studyUid, None) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1820 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1821 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1822 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type="application/dicom"') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1823 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/nope') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1824 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=*') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1825 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=*') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1826 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=nope') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1827 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1') |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1828 |
|
560
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1829 uri = '/dicom-web/studies/%s/series/%s/instances/%s/bulk/0010,0010' % ( |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1830 studyUid, '1.3.12.2.1107.5.99.2.1255.30000007020811545343700000012', |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1831 '1.2.276.0.7230010.3.1.4.2455711835.6056.1170936079.1') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1832 CheckIsBulk(uri, None) |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1833 CheckBadRequest(uri, 'multipart/nope') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1834 CheckIsBulk(uri, 'multipart/related') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1835 CheckIsBulk(uri, 'multipart/related;type=application/octet-stream') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1836 CheckIsBulk(uri, 'multipart/related; type = "application/octet-stream" ') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1837 CheckBadRequest(uri, 'multipart/related; type = " application/octet-stream" ') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1838 CheckBadRequest(uri, 'multipart/related;type=application/nope') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1839 CheckBadRequest(uri, 'multipart/related;range=') |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1840 |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1841 |
|
32
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1842 try: |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1843 print('\nStarting the tests...') |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1844 unittest.main(argv = [ sys.argv[0] ] + args.options) |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1845 |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1846 finally: |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1847 print('\nDone') |