Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 278:514785dacd6d
fix dicomweb tests with debian
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Wed, 04 Mar 2020 14:09:15 +0100 |
| parents | 95c47602990c |
| children | 7fa5c7a03137 |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
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9 # |
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10 # This program is free software: you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License as |
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12 # published by the Free Software Foundation, either version 3 of the |
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13 # License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, but |
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 # General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 |
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23 |
| 85 | 24 |
| 25 # You must add the following to the configuration file: | |
| 26 # | |
| 27 # "DicomWeb" : { | |
| 28 # "Servers" : { | |
| 29 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 30 # } | |
| 31 # } | |
| 32 | |
| 33 | |
| 34 | |
| 35 | |
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36 import os |
| 33 | 37 import pprint |
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38 import sys |
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39 import argparse |
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40 import unittest |
| 83 | 41 import re |
| 33 | 42 from DicomWeb import * |
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43 |
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44 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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45 from Toolbox import * |
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46 |
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47 |
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48 ## |
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49 ## Parse the command-line arguments |
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50 ## |
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51 |
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52 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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53 |
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54 parser.add_argument('--server', |
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55 default = 'localhost', |
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56 help = 'Address of the Orthanc server to test') |
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57 parser.add_argument('--rest', |
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58 type = int, |
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59 default = 8042, |
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60 help = 'Port to the REST API') |
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61 parser.add_argument('--username', |
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62 default = 'alice', |
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63 help = 'Username to the REST API') |
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64 parser.add_argument('--password', |
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65 default = 'orthanctest', |
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66 help = 'Password to the REST API') |
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67 parser.add_argument('--wado', |
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68 default = '/wado', |
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69 help = 'Path to the WADO API') |
| 33 | 70 parser.add_argument('--dicomweb', |
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71 default = '/dicom-web/', |
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72 help = 'Path to the DICOMweb API') |
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73 parser.add_argument('--force', help = 'Do not warn the user', |
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74 action = 'store_true') |
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75 parser.add_argument('options', metavar = 'N', nargs = '*', |
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76 help='Arguments to Python unittest') |
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77 |
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78 args = parser.parse_args() |
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79 |
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80 |
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81 ## |
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82 ## Configure the testing context |
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83 ## |
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84 |
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85 if not args.force: |
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86 print(""" |
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87 WARNING: This test will remove all the content of your |
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88 Orthanc instance running on %s! |
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89 |
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90 Are you sure ["yes" to go on]?""" % args.server) |
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91 |
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92 if sys.stdin.readline().strip() != 'yes': |
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93 print('Aborting...') |
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94 exit(0) |
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95 |
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96 |
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97 ORTHANC = DefineOrthanc(server = args.server, |
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98 username = args.username, |
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99 password = args.password, |
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100 restPort = args.rest) |
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101 |
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102 |
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103 ## |
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104 ## The tests |
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105 ## |
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106 |
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107 |
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108 def UploadAndGetWadoPath(dicom): |
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109 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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110 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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111 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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112 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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113 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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114 |
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115 |
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116 |
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117 class Orthanc(unittest.TestCase): |
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118 def setUp(self): |
| 83 | 119 if (sys.version_info >= (3, 0)): |
| 120 # Remove annoying warnings about unclosed socket in Python 3 | |
| 121 import warnings | |
| 122 warnings.simplefilter("ignore", ResourceWarning) | |
| 123 | |
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124 #print("In test: ", self._testMethodName) |
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125 |
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126 DropOrthanc(ORTHANC) |
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127 |
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128 def test_wado_dicom(self): |
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129 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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130 |
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131 SIZE = 169478 |
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132 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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133 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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134 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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135 |
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136 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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137 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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138 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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139 |
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140 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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141 self.assertEqual(SIZE, len(dicom)) |
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142 |
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143 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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144 self.assertEqual(SIZE, len(dicom)) |
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145 |
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146 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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147 self.assertEqual(SIZE, len(dicom)) |
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148 |
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149 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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150 self.assertEqual(SIZE, len(dicom)) |
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151 |
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152 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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153 self.assertEqual(SIZE, len(dicom)) |
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154 |
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155 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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156 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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157 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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158 |
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159 def test_wado_image(self): |
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160 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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161 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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162 |
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163 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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164 self.assertEqual('JPEG', im.format) |
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165 self.assertEqual('L', im.mode) |
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166 self.assertEqual(512, im.size[0]) |
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167 self.assertEqual(358, im.size[1]) |
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168 |
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169 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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170 self.assertEqual('JPEG', im.format) |
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171 |
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172 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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173 self.assertEqual('PNG', im.format) |
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174 self.assertEqual('L', im.mode) |
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175 self.assertEqual(512, im.size[0]) |
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176 self.assertEqual(358, im.size[1]) |
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177 |
| 33 | 178 def test_stow(self): |
| 179 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 180 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 181 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 182 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 183 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 184 | |
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185 self.assertEqual(4, len(a)) |
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186 |
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187 # Specific character set |
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188 self.assertTrue('00080005' in a) |
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189 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 190 |
| 191 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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192 self.assertEqual('UR', a['00081190']['vr']) |
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193 |
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194 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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195 self.assertEqual('SQ', a['00081198']['vr']) |
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196 |
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197 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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198 self.assertEqual('SQ', a['00081199']['vr']) |
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199 |
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200 b = a['00081199']['Value'][0] |
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201 |
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202 # Referenced SOP class UID |
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203 self.assertEqual('UI', b['00081150']['vr']) |
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204 self.assertEqual(1, len(b['00081150']['Value'])) |
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205 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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206 |
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207 # Referenced SOP instance UID |
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208 self.assertEqual('UI', b['00081155']['vr']) |
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209 self.assertEqual(1, len(b['00081155']['Value'])) |
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210 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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211 |
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212 # Retrieve URL |
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213 self.assertEqual('UR', b['00081190']['vr']) |
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214 self.assertEqual(1, len(b['00081190']['Value'])) |
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215 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 216 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 217 | |
| 83 | 218 # Remove the "http://localhost:8042" prefix |
| 219 url = a['00081190']['Value'][0] | |
| 220 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 221 | |
| 222 # Get the content-length of all the multiparts of this WADO-RS request | |
| 223 b = DoGet(ORTHANC, url).decode('utf-8', 'ignore') | |
| 224 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) | |
| 225 self.assertEqual(1, len(parts)) | |
| 226 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 227 |
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228 |
| 84 | 229 def test_server_get(self): |
| 277 | 230 try: |
| 231 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 232 except: | |
| 233 pass | |
| 234 | |
| 84 | 235 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 236 | |
| 237 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 238 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 239 | |
| 129 | 240 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 241 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 242 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 243 | |
| 84 | 244 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 245 self.assertEqual(5, len(sample)) |
| 84 | 246 self.assertTrue('stow' in sample) |
| 247 self.assertTrue('retrieve' in sample) | |
| 248 self.assertTrue('get' in sample) | |
| 244 | 249 self.assertTrue('wado' in sample) # New in 0.7 |
| 250 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 251 |
| 252 # application/dicom+xml | |
|
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253 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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254 headers = { 'Accept' : 'application/dicom+xml' }), |
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255 re.MULTILINE))) |
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256 self.assertEqual(2, len(re.findall('^--', DoPost |
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257 (ORTHANC, '/dicom-web/servers/sample/get', |
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258 { 'Uri' : '/studies', |
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259 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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260 }), re.MULTILINE))) |
| 84 | 261 |
| 262 # application/dicom+json | |
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263 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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264 headers = { 'Accept' : 'application/dicom+json' }))) |
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265 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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266 { 'Uri' : '/studies', |
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267 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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268 |
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269 # application/json |
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270 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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271 headers = { 'Accept' : 'application/json' }))) |
| 84 | 272 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 273 { 'Uri' : '/studies', | |
| 274 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 275 | |
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276 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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277 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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278 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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279 { 'Uri' : '/studies' }))) |
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280 |
| 84 | 281 |
| 282 def test_server_stow(self): | |
| 283 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 284 | |
| 285 self.assertRaises(Exception, lambda: | |
| 286 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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287 { 'Resources' : [ 'nope' ], |
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288 'Synchronous' : True })) # inexisting resource |
| 84 | 289 |
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290 l = 2 # For >= 0.7 |
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291 #l = 0 # For <= 0.6 |
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292 |
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293 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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294 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
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295 'Synchronous' : True }))) # study |
| 84 | 296 |
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297 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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298 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
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299 'Synchronous' : True }))) # series |
| 84 | 300 |
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301 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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302 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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303 'Synchronous' : True }))) # instance |
| 84 | 304 |
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305 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
| 84 | 306 { 'Resources' : [ |
| 307 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 308 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 309 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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310 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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311 'Synchronous' : True }))) # altogether |
| 84 | 312 |
| 313 | |
| 314 def test_server_retrieve(self): | |
| 244 | 315 COUNT = 'ReceivedInstancesCount' |
| 316 #COUNT = 'Instances' # In version <= 0.6 | |
| 317 | |
| 84 | 318 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 319 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 320 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 321 | |
| 322 self.assertRaises(Exception, lambda: | |
| 323 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 324 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 325 | |
| 326 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 327 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 328 self.assertEqual(3, int(t[COUNT])) |
| 84 | 329 |
| 330 # Missing "Study" field | |
| 331 self.assertRaises(Exception, lambda: | |
| 332 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 333 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 334 | |
| 335 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 336 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 337 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 338 self.assertEqual(2, int(t[COUNT])) |
| 84 | 339 |
| 340 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 341 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 342 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 343 self.assertEqual(1, int(t[COUNT])) |
| 84 | 344 |
| 345 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 346 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 347 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 348 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 349 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 350 self.assertEqual(3, int(t[COUNT])) |
| 84 | 351 |
| 352 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 353 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 354 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 355 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 356 self.assertEqual(1, int(t[COUNT])) |
| 84 | 357 |
| 358 | |
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359 def test_bitbucket_issue_53(self): |
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360 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
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361 # https://bitbucket.org/sjodogne/orthanc/issues/53 |
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362 |
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363 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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364 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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365 |
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366 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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367 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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368 |
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369 a = DoGet(ORTHANC, '/dicom-web/studies', |
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370 headers = { 'accept' : 'application/json' }) |
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371 self.assertEqual(2, len(a)) |
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372 |
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373 b = [] |
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374 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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375 headers = { 'accept' : 'application/json' }) |
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376 self.assertEqual(1, len(a)) |
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377 b.append(a[0]['0020000D']['Value'][0]) |
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378 |
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379 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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380 headers = { 'accept' : 'application/json' }) |
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381 self.assertEqual(1, len(a)) |
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382 b.append(a[0]['0020000D']['Value'][0]) |
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383 |
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384 self.assertTrue(brainix in b) |
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385 self.assertTrue(knee in b) |
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386 |
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387 |
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388 def test_bitbucket_issue_111(self): |
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389 # Wrong serialization of empty values |
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390 # https://bitbucket.org/sjodogne/orthanc/issues/111 |
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391 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3/ |
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392 |
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393 # According to the standard, section F.2.5 |
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394 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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395 # null values behave as follows: If an attribute is present in |
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396 # DICOM but empty (i.e., Value Length is 0), it shall be |
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397 # preserved in the DICOM JSON attribute object containing no |
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398 # "Value", "BulkDataURI" or "InlineBinary". |
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399 # https://bitbucket.org/sjodogne/orthanc/issues/111/qido-rs-wrong-serialization-of-empty |
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400 |
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401 UploadInstance(ORTHANC, 'Issue111.dcm') |
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402 |
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403 # Test WADO-RS |
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404 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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405 self.assertEqual(1, len(a)) |
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406 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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407 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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408 self.assertEqual('SH', a[0]['00080050']['vr']) |
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409 |
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410 # Test QIDO-RS |
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411 a = DoGet(ORTHANC, '/dicom-web/studies') |
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412 self.assertEqual(1, len(a)) |
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413 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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414 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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415 self.assertEqual('SH', a[0]['00080050']['vr']) |
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416 |
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417 |
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418 def test_wado_hierarchy(self): |
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419 def CheckJson(uri, headers = {}): |
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420 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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421 expected = json.loads(f.read()) |
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422 actual = DoGet(ORTHANC, uri, headers) |
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423 self.assertEqual(1, len(actual)) |
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424 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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425 |
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426 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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427 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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428 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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429 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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430 |
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431 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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432 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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433 headers = { 'accept' : 'application/nope' })) |
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434 |
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435 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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436 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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437 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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438 |
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439 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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440 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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441 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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442 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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443 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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444 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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445 |
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446 |
| 228 | 447 def test_wado_pixel_data(self): |
| 448 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 449 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 450 self.assertEqual(1, len(a)) | |
| 451 url = a[0]['00081190']['Value'][0] | |
| 452 | |
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453 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 454 self.assertTrue(url.startswith(prefix)) |
| 455 | |
| 456 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 457 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 458 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 459 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 460 | |
| 461 url = b[0]['7FE00010']['BulkDataURI'] | |
| 462 self.assertTrue(url.startswith(prefix)) | |
| 463 | |
| 464 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 465 | |
| 466 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 467 self.assertEqual(4, len(p[0])) | |
| 468 self.assertEqual(114486, len(p[1])) | |
| 469 | |
| 470 | |
| 471 def test_wado_hierarchy_bulk(self): | |
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472 def CheckBulk(value, bulk): |
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473 self.assertEqual(2, len(value)) |
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474 self.assertTrue('BulkDataURI' in value) |
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475 self.assertTrue('vr' in value) |
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476 self.assertEqual(value['BulkDataURI'], bulk) |
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477 |
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478 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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479 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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480 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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481 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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482 |
| 228 | 483 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 484 # the following fix is not included yet: | |
| 485 # https://bitbucket.org/sjodogne/orthanc/commits/b88937ef597b33c4387a546c751827019bcdc205 | |
| 486 | |
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487 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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488 self.assertEqual(1, len(a)) |
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489 |
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490 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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491 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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492 |
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493 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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494 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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495 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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496 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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497 |
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498 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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499 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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500 |
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501 self.assertEqual(12288, len(b)) |
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502 self.assertEqual(1, len(c)) |
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503 self.assertEqual(b, c[0]) |
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504 |
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505 |
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506 def test_bitbucket_issue_112(self): |
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507 # Wrong serialization of number values |
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508 # https://bitbucket.org/sjodogne/orthanc/issues/112 |
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509 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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510 |
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511 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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512 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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513 |
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514 # This is the WADO-RS testing |
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515 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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516 self.assertEqual(1, len(a)) |
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517 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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518 |
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519 if (sys.version_info >= (3, 0)): |
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520 types = (int) |
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521 else: |
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522 types = (int, long) |
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523 |
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524 b = a[0]['00180091']['Value'][0] |
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525 self.assertTrue(isinstance(b, types)) |
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526 self.assertEqual(10, b) |
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527 |
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528 # This is the QIDO-RS testing |
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529 a = DoGet(ORTHANC, '/dicom-web/studies') |
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530 self.assertEqual(1, len(a)) |
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531 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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532 |
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533 b = a[0]['00201208']['Value'][0] |
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534 self.assertTrue(isinstance(b, types)) |
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535 self.assertEqual(1, b) |
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536 |
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537 |
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538 def test_bitbucket_issue_113(self): |
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539 # Wrong serialization of PN VR |
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540 # https://bitbucket.org/sjodogne/orthanc/issues/113 |
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541 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
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542 |
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543 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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544 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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545 |
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546 # This is the WADO-RS testing |
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547 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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548 self.assertEqual(1, len(a)) |
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549 |
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550 pn = a[0]['00100010'] # Patient name |
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551 self.assertEqual('PN', pn['vr']) |
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552 self.assertEqual(1, len(pn['Value'])) |
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553 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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554 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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555 |
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556 # This is the QIDO-RS testing |
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557 a = DoGet(ORTHANC, '/dicom-web/studies') |
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558 self.assertEqual(1, len(a)) |
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559 |
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560 pn = a[0]['00100010'] # Patient name |
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561 self.assertEqual('PN', pn['vr']) |
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562 self.assertEqual(1, len(pn['Value'])) |
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563 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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564 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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565 |
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566 |
| 225 | 567 def test_bitbucket_issue_96(self): |
| 568 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 569 # https://bitbucket.org/sjodogne/orthanc/issues/96 | |
| 570 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ | |
| 571 | |
| 228 | 572 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 573 |
| 574 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 575 self.assertEqual(1, len(a)) | |
| 228 | 576 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 577 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 578 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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579 |
| 225 | 580 url = a[0]['00081190']['Value'][0] |
| 581 | |
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582 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 583 self.assertTrue(url.startswith(prefix)) |
| 584 uri = url[len(prefix):] | |
| 585 | |
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586 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 587 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 588 | |
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589 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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590 self.assertEqual(1, len(b)) |
| 228 | 591 self.assertEqual(256 * 256 * 2, len(b[0])) |
| 225 | 592 |
| 228 | 593 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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594 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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595 self.assertEqual(1, len(c)) |
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596 self.assertEqual(b[0], c[0]) |
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597 |
| 228 | 598 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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599 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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600 self.assertEqual(1, len(c)) |
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601 self.assertEqual(b[0], c[0]) |
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602 |
| 228 | 603 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 604 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 605 | |
| 606 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 607 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 608 | |
| 609 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 610 headers = { 'Accept' : 'nope' })) | |
| 611 | |
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612 |
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613 def test_qido_fields(self): |
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614 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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615 |
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616 a = DoGet(ORTHANC, '/dicom-web/studies') |
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617 self.assertEqual(1, len(a)) |
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618 self.assertFalse('00280010' in a[0]) # Rows |
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619 |
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620 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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621 self.assertEqual(1, len(a)) |
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622 self.assertTrue('00280010' in a[0]) |
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623 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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624 |
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625 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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626 self.assertEqual(0, len(a)) |
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627 |
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628 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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629 self.assertEqual(1, len(a)) |
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630 self.assertTrue('00280010' in a[0]) |
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631 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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632 |
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633 |
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634 def test_stow_errors(self): |
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635 # Pushing an instance to a study that is not its parent |
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636 a = SendStow(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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637 self.assertEqual(3, len(a)) |
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638 self.assertTrue('00080005' in a) |
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639 self.assertEqual('CS', a['00080005']['vr']) |
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640 self.assertTrue('00081198' in a) |
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641 self.assertEqual('SQ', a['00081198']['vr']) |
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642 self.assertEqual(1, len(['00081198'])) |
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643 self.assertTrue('00081199' in a) |
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644 self.assertEqual('SQ', a['00081199']['vr']) |
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645 self.assertEqual(1, len(['00081199'])) |
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646 |
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647 # Pushing an instance with missing tags |
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648 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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649 self.assertEqual(3, len(a)) |
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650 self.assertTrue('00080005' in a) |
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651 self.assertEqual('CS', a['00080005']['vr']) |
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652 self.assertTrue('00081198' in a) |
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653 self.assertEqual('SQ', a['00081198']['vr']) |
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654 self.assertEqual(1, len(['00081198'])) |
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655 self.assertTrue('00081199' in a) |
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656 self.assertEqual('SQ', a['00081199']['vr']) |
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657 self.assertEqual(1, len(['00081199'])) |
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658 |
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659 # Pushing a file that is not in the DICOM format |
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660 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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661 self.assertEqual(3, len(a)) |
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662 self.assertTrue('00080005' in a) |
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663 self.assertEqual('CS', a['00080005']['vr']) |
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664 self.assertTrue('00081198' in a) |
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665 self.assertEqual('SQ', a['00081198']['vr']) |
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666 self.assertEqual(1, len(['00081198'])) |
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667 self.assertTrue('00081199' in a) |
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668 self.assertEqual('SQ', a['00081199']['vr']) |
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669 self.assertEqual(1, len(['00081199'])) |
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670 |
|
239
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671 |
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672 def test_allowed_methods(self): |
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673 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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674 |
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675 with self.assertRaises(Exception) as e: |
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676 DoPut(ORTHANC, '/dicom-web/studies') |
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677 |
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678 self.assertEqual(405, e.exception[0]) |
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679 self.assertEqual("GET,POST", e.exception[1]['allow']) |
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680 |
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681 with self.assertRaises(Exception) as e: |
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682 DoDelete(ORTHANC, '/dicom-web/studies') |
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683 |
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684 self.assertEqual(405, e.exception[0]) |
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685 self.assertEqual("GET,POST", e.exception[1]['allow']) |
|
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686 |
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687 |
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688 def test_add_server(self): |
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689 try: |
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690 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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691 except: |
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692 pass |
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693 |
| 277 | 694 try: |
| 695 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 696 except: | |
| 697 pass | |
| 698 | |
|
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699 l = DoGet(ORTHANC, '/dicom-web/servers') |
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700 self.assertEqual(1, len(l)) |
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701 self.assertTrue('sample' in l) |
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702 |
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703 url = 'http://localhost:8042/dicom-web/' |
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704 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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705 'Url': url, |
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706 'HttpHeaders' : { |
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707 'Hello' : 'World' |
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708 }, |
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709 'Username' : 'bob', |
| 242 | 710 'Password' : 'password', |
| 711 'UserProperty' : 'Test', | |
|
249
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712 'HasDelete' : True, |
|
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713 }) |
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714 |
|
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715 l = DoGet(ORTHANC, '/dicom-web/servers') |
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716 self.assertEqual(2, len(l)) |
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717 self.assertTrue('sample' in l) |
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718 self.assertTrue('hello' in l) |
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719 |
|
249
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720 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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721 self.assertEqual(5, len(o)) |
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722 self.assertTrue('stow' in o) |
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723 self.assertTrue('retrieve' in o) |
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724 self.assertTrue('get' in o) |
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725 self.assertTrue('wado' in o) # New in 0.7 |
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726 self.assertTrue('qido' in o) # New in 0.7 |
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727 |
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728 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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729 self.assertEqual(6, len(o)) |
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730 self.assertTrue('stow' in o) |
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731 self.assertTrue('retrieve' in o) |
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732 self.assertTrue('get' in o) |
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733 self.assertTrue('wado' in o) # New in 0.7 |
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734 self.assertTrue('qido' in o) # New in 0.7 |
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735 self.assertTrue('delete' in o) # New in 0.7 |
|
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|
736 |
|
241
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737 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
249
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738 self.assertEqual(7, len(s['hello'])) |
|
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739 self.assertEqual(url, s['hello']['Url']) |
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740 self.assertEqual('bob', s['hello']['Username']) |
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741 self.assertEqual(None, s['hello']['Password']) |
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742 self.assertFalse(s['hello']['Pkcs11']) |
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743 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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744 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 745 self.assertEqual('Test', s['hello']['UserProperty']) |
|
249
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746 self.assertEqual('1', s['hello']['HasDelete']) |
|
241
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747 |
|
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748 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
246
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749 |
|
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|
750 |
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751 def test_bitbucket_issue_143(self): |
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752 # WADO-RS metadata request returns "500 Internal Server Error" |
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753 # instead of "404 Not Found" for missing instance |
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754 # https://bitbucket.org/sjodogne/orthanc/issues/143 |
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755 UploadInstance(ORTHANC, 'Issue143.dcm') |
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756 |
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757 try: |
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758 DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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759 self.assertFail() |
|
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760 except Exception as e: |
|
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761 self.assertEqual(404, e[0]) |
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762 |
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763 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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764 |
|
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765 try: |
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766 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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767 self.fail() |
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768 except Exception as e: |
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769 self.assertEqual(404, e[0]) |
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770 |
|
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771 try: |
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772 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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773 self.assertFail() |
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774 except Exception as e: |
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775 self.assertEqual(404, e[0]) |
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776 |
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777 try: |
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778 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
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779 self.assertFail() |
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780 except Exception as e: |
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781 self.assertEqual(404, e[0]) |
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782 |
|
248
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783 |
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784 def test_encodings_qido(self): |
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785 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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786 # in the integration tests, so all the QIDO-RS requests must |
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787 # lead to a "ISO_IR 192" specific character set |
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788 def GetPatientName(dicom, onlyAlphabetic): |
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789 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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790 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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791 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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792 self.assertEqual(1, len(qido)) |
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793 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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794 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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795 if onlyAlphabetic: |
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796 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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797 else: |
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798 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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799 return qido[0]['00100010']['Value'][0] |
|
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|
800 |
|
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801 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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802 |
|
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803 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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804 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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805 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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806 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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807 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
|
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808 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
|
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changeset
|
809 |
|
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810 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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811 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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812 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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813 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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814 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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815 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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816 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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817 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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818 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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819 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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820 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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821 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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822 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
|
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823 |
|
249
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824 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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825 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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826 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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|
827 |
|
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|
828 |
|
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829 def test_encodings_wado_metadata(self): |
|
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830 # If querying the instance metadata, the "DefaultEncoding" |
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831 # configuration is not used, but the actual encoding |
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832 def GetEncoding(dicom, length): |
|
249
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833 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
|
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834 self.assertEqual(1, len(qido)) |
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835 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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836 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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837 return qido[0]['00080005']['Value'] |
|
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|
838 |
|
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839 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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840 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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841 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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842 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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843 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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844 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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845 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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846 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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847 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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848 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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849 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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850 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
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|
851 |
|
249
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852 |
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853 def test_rendered(self): |
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854 def RenderFrame(path, i): |
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855 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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856 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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857 }) |
|
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858 |
|
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859 # This image has 76 frames |
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860 path = UploadAndGetWadoPath('Multiframe.dcm') |
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|
861 |
|
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862 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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863 |
|
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864 frame1 = RenderFrame(path, 1) |
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865 im = UncompressImage(frame1) |
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866 self.assertEqual("L", im.mode) |
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867 self.assertEqual(512, im.size[0]) |
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868 self.assertEqual(512, im.size[1]) |
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869 |
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870 im = UncompressImage(RenderFrame(path, 76)) |
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871 self.assertEqual("L", im.mode) |
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872 self.assertEqual(512, im.size[0]) |
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873 self.assertEqual(512, im.size[1]) |
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|
874 |
|
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875 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
|
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|
876 |
|
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877 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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878 'Uri' : '%s/rendered' % path |
|
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879 }) |
|
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|
880 |
|
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|
881 self.assertEqual(len(frame1), len(defaultFrame)) |
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882 self.assertEqual(frame1, defaultFrame) |
|
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|
883 |
|
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changeset
|
884 |
|
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|
885 # This image has 1 frame |
|
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886 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
|
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changeset
|
887 |
|
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|
888 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
|
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889 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
|
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changeset
|
890 |
|
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|
891 frame1 = RenderFrame(path, 1) |
|
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892 im = UncompressImage(frame1) |
|
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893 self.assertEqual("L", im.mode) |
|
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|
894 self.assertEqual(512, im.size[0]) |
|
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|
895 self.assertEqual(358, im.size[1]) |
|
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changeset
|
896 |
|
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|
897 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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|
898 'Uri' : '%s/rendered' % path |
|
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changeset
|
899 }) |
|
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diff
changeset
|
900 |
|
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changeset
|
901 self.assertEqual(len(frame1), len(defaultFrame)) |
|
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changeset
|
902 self.assertEqual(frame1, defaultFrame) |
|
259
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diff
changeset
|
903 |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
904 |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
905 def test_qido_parent_attributes(self): |
|
298f80c6ccc4
test_qido_parent_attributes
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changeset
|
906 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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changeset
|
907 study = '2.16.840.1.113669.632.20.1211.10000357775' |
|
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changeset
|
908 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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changeset
|
909 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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diff
changeset
|
910 |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
911 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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changeset
|
912 self.assertEqual(1, len(a)) |
|
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changeset
|
913 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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changeset
|
914 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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915 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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916 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
changeset
|
917 |
|
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changeset
|
918 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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changeset
|
919 self.assertEqual(1, len(a)) |
|
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|
920 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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|
921 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
|
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changeset
|
922 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
|
923 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
changeset
|
924 |
|
298f80c6ccc4
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changeset
|
925 a = DoGet(ORTHANC, '/dicom-web/series') |
|
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changeset
|
926 self.assertEqual(1, len(a)) |
|
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changeset
|
927 self.assertFalse('00080018' in a[0]) |
|
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changeset
|
928 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
|
929 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
930 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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changeset
|
931 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
changeset
|
932 |
|
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diff
changeset
|
933 a = DoGet(ORTHANC, '/dicom-web/instances') |
|
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|
934 self.assertEqual(1, len(a)) |
|
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935 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
|
936 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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937 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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changeset
|
938 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
298f80c6ccc4
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changeset
|
939 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
940 |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
941 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
|
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diff
changeset
|
942 self.assertEqual(1, len(a)) |
|
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943 self.assertFalse('00080018' in a[0]) |
|
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944 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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945 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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946 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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947 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
948 |
|
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|
949 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
|
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|
950 self.assertEqual(1, len(a)) |
|
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951 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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952 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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953 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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954 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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955 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
956 |
|
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|
957 # "If {StudyInstanceUID} is not specified, all Study-level |
|
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|
958 # attributes specified in Table 6.7.1-2" => Here, |
|
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959 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
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|
960 # PatientName. |
|
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|
961 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
|
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|
962 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
|
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|
963 self.assertEqual(1, len(a)) |
|
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964 self.assertFalse('00100010' in a[0]) # PatientName |
|
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965 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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966 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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967 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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968 |
|
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969 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
|
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|
970 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
|
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|
971 self.assertEqual(1, len(a)) |
|
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972 self.assertFalse('00100010' in a[0]) # PatientName |
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973 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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974 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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975 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
976 |
|
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|
977 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
|
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978 self.assertEqual(1, len(a)) |
|
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|
979 self.assertFalse('00080060' in a[0]) # Modality |
|
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980 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
|
981 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
982 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
983 |
|
298f80c6ccc4
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|
984 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
|
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|
985 self.assertEqual(1, len(a)) |
|
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|
986 self.assertFalse('00100010' in a[0]) # PatientName |
|
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|
987 self.assertFalse('00080060' in a[0]) # Modality |
|
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988 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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989 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
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changeset
|
990 |
|
b8cdb0aef4b9
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|
991 |
|
270
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|
992 #@unittest.skip("Skip this test on GDCM 2.8.4") |
|
261
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|
993 def test_bitbucket_issue_164(self): |
|
270
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|
994 # WARNING - This makes GDCM 2.8.4 crash |
|
261
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995 # https://bitbucket.org/sjodogne/orthanc/issues/164 |
|
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|
996 UploadInstance(ORTHANC, 'Issue164.dcm') |
|
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|
997 |
|
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|
998 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
|
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changeset
|
999 self.assertEqual(1, len(p)) |
|
b8cdb0aef4b9
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1000 self.assertEqual(743 * 975 * 3, len(p[0])) |
|
270
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|
1001 |
|
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test_bitbuck_issue_168
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changeset
|
1002 |
| 271 | 1003 def test_bitbucket_issue_168(self): |
| 276 | 1004 # "Plugins can't read private tags from the configuration |
| 1005 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1006 # 16.04), or if Orthanc <= 1.5.8 | |
|
270
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|
1007 # https://bitbucket.org/sjodogne/orthanc/issues/168/ |
|
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|
1008 |
|
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test_bitbuck_issue_168
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changeset
|
1009 UploadInstance(ORTHANC, 'Issue168.dcm') |
|
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|
1010 |
|
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1011 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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1012 self.assertEqual(1, len(a)) |
|
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1013 self.assertFalse('00090010' in a[0]) |
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1014 self.assertFalse('00091001' in a[0]) |
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changeset
|
1015 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
|
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|
1016 |
|
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changeset
|
1017 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
|
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1018 self.assertEqual(1, len(a)) |
|
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changeset
|
1019 self.assertFalse('00090010' in a[0]) |
|
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changeset
|
1020 self.assertTrue('00091001' in a[0]) |
|
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|
1021 self.assertEqual('DS', a[0]['00091001']['vr']) |
|
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|
1022 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
|
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changeset
|
1023 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
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|
1024 |
|
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changeset
|
1025 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
|
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changeset
|
1026 self.assertEqual(1, len(a)) |
|
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changeset
|
1027 self.assertTrue('00090010' in a[0]) |
|
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|
1028 self.assertEqual('LO', a[0]['00090010']['vr']) |
|
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changeset
|
1029 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
|
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1030 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
|
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changeset
|
1031 self.assertTrue('00091001' in a[0]) |
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1032 self.assertEqual('DS', a[0]['00091001']['vr']) |
|
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|
1033 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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changeset
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1034 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
249
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1035 |
|
270
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changeset
|
1036 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
|
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1037 self.assertEqual(0, len(a)) |
|
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|
1038 |
|
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|
1039 |
|
272
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diff
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|
1040 def test_rendered_studies_series(self): |
|
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1041 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
|
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1042 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
|
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1043 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
|
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changeset
|
1044 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
|
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1045 |
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1046 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1047 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1048 }) |
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1049 |
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1050 im = UncompressImage(a) |
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1051 self.assertEqual("L", im.mode) |
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1052 self.assertEqual(512, im.size[0]) |
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1053 self.assertEqual(358, im.size[1]) |
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1054 |
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1055 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1056 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1057 }) |
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1058 |
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1059 self.assertEqual(len(a), len(b)) |
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1060 self.assertEqual(a, b) |
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1061 |
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1062 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1063 'Uri' : '/studies/%s/rendered' % study |
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1064 }) |
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1065 |
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1066 self.assertEqual(len(a), len(c)) |
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1067 self.assertEqual(a, c) |
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1068 |
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1069 |
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1070 def test_multiple_mime_accept_wado_rs(self): |
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1071 # "Multiple MIME type Accept Headers for Wado-RS" |
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1072 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1073 |
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1074 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1075 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1076 |
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1077 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1078 |
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1079 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1080 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1081 |
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1082 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1083 headers = { 'Accept' : 'application/json' }))) |
| 1084 | |
| 1085 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1086 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1087 | |
| 1088 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
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1089 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1090 |
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1091 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1092 headers = { 'Accept' : 'application/json, tata' }))) |
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1093 |
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1094 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1095 headers = { 'Accept' : 'toto' })) |
| 1096 | |
| 1097 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
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1098 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1099 |
| 1100 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1101 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1102 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1103 | |
| 1104 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1105 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1106 | |
| 1107 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1108 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
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1109 |
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1110 |
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1111 |
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1112 try: |
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1113 print('\nStarting the tests...') |
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1114 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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1115 |
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1116 finally: |
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1117 print('\nDone') |