Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 562:a6fb40c2b722
merge
| author | Alain Mazy <am@osimis.io> |
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| date | Wed, 28 Jun 2023 16:44:21 +0200 |
| parents | 2c809c605592 2db7a9041507 |
| children | be69d6d8260c |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
| 85 | 25 |
| 26 # You must add the following to the configuration file: | |
| 27 # | |
| 28 # "DicomWeb" : { | |
| 29 # "Servers" : { | |
| 30 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 31 # } | |
| 32 # } | |
| 33 | |
| 34 | |
| 35 | |
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36 import argparse |
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37 import copy |
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38 import os |
| 33 | 39 import pprint |
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40 import pydicom |
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41 import re |
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42 import sys |
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43 import unittest |
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44 import xml.dom.minidom |
| 304 | 45 from PIL import ImageChops |
| 46 | |
| 33 | 47 from DicomWeb import * |
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48 |
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49 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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50 from Toolbox import * |
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51 |
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52 |
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53 ## |
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54 ## Parse the command-line arguments |
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55 ## |
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56 |
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57 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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58 |
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59 parser.add_argument('--server', |
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60 default = 'localhost', |
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61 help = 'Address of the Orthanc server to test') |
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62 parser.add_argument('--rest', |
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63 type = int, |
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64 default = 8042, |
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65 help = 'Port to the REST API') |
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66 parser.add_argument('--username', |
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67 default = 'alice', |
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68 help = 'Username to the REST API') |
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69 parser.add_argument('--password', |
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70 default = 'orthanctest', |
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71 help = 'Password to the REST API') |
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72 parser.add_argument('--wado', |
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73 default = '/wado', |
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74 help = 'Path to the WADO API') |
| 33 | 75 parser.add_argument('--dicomweb', |
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76 default = '/dicom-web/', |
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77 help = 'Path to the DICOMweb API') |
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78 parser.add_argument('--force', help = 'Do not warn the user', |
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79 action = 'store_true') |
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80 parser.add_argument('options', metavar = 'N', nargs = '*', |
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81 help='Arguments to Python unittest') |
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82 |
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83 args = parser.parse_args() |
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84 |
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85 |
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86 ## |
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87 ## Configure the testing context |
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88 ## |
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89 |
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90 if not args.force: |
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91 print(""" |
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92 WARNING: This test will remove all the content of your |
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93 Orthanc instance running on %s! |
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94 |
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95 Are you sure ["yes" to go on]?""" % args.server) |
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96 |
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97 if sys.stdin.readline().strip() != 'yes': |
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98 print('Aborting...') |
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99 exit(0) |
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100 |
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101 |
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102 ORTHANC = DefineOrthanc(server = args.server, |
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103 username = args.username, |
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104 password = args.password, |
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105 restPort = args.rest) |
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106 |
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107 |
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108 ## |
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109 ## The tests |
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110 ## |
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111 |
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112 |
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113 def UploadAndGetWadoPath(dicom): |
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114 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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115 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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116 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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117 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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118 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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119 |
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120 |
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121 |
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122 class Orthanc(unittest.TestCase): |
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123 def setUp(self): |
| 83 | 124 if (sys.version_info >= (3, 0)): |
| 125 # Remove annoying warnings about unclosed socket in Python 3 | |
| 126 import warnings | |
| 127 warnings.simplefilter("ignore", ResourceWarning) | |
| 128 | |
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129 #print("In test: ", self._testMethodName) |
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130 |
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131 DropOrthanc(ORTHANC) |
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132 |
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133 def test_wado_dicom(self): |
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134 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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135 |
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136 SIZE = 169478 |
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137 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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138 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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139 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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140 |
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141 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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142 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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143 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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144 |
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145 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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146 self.assertEqual(SIZE, len(dicom)) |
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147 |
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148 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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149 self.assertEqual(SIZE, len(dicom)) |
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150 |
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151 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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152 self.assertEqual(SIZE, len(dicom)) |
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153 |
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154 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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155 self.assertEqual(SIZE, len(dicom)) |
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156 |
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157 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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158 self.assertEqual(SIZE, len(dicom)) |
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159 |
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160 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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161 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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162 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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163 |
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164 def test_wado_image(self): |
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165 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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166 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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167 |
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168 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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169 self.assertEqual('JPEG', im.format) |
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170 self.assertEqual('L', im.mode) |
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171 self.assertEqual(512, im.size[0]) |
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172 self.assertEqual(358, im.size[1]) |
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173 |
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174 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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175 self.assertEqual('JPEG', im.format) |
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176 |
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177 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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178 self.assertEqual('PNG', im.format) |
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179 self.assertEqual('L', im.mode) |
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180 self.assertEqual(512, im.size[0]) |
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181 self.assertEqual(358, im.size[1]) |
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182 |
| 33 | 183 def test_stow(self): |
| 184 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 185 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 186 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 187 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 188 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 189 | |
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190 self.assertEqual(4, len(a)) |
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191 |
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192 # Specific character set |
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193 self.assertTrue('00080005' in a) |
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194 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 195 |
| 196 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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197 self.assertEqual('UR', a['00081190']['vr']) |
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198 |
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199 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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200 self.assertEqual('SQ', a['00081198']['vr']) |
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201 |
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202 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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203 self.assertEqual('SQ', a['00081199']['vr']) |
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204 |
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205 b = a['00081199']['Value'][0] |
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206 |
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207 # Referenced SOP class UID |
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208 self.assertEqual('UI', b['00081150']['vr']) |
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209 self.assertEqual(1, len(b['00081150']['Value'])) |
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210 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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211 |
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212 # Referenced SOP instance UID |
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213 self.assertEqual('UI', b['00081155']['vr']) |
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214 self.assertEqual(1, len(b['00081155']['Value'])) |
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215 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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216 |
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217 # Retrieve URL |
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218 self.assertEqual('UR', b['00081190']['vr']) |
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219 self.assertEqual(1, len(b['00081190']['Value'])) |
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220 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 221 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 222 | |
| 83 | 223 # Remove the "http://localhost:8042" prefix |
| 224 url = a['00081190']['Value'][0] | |
| 225 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 226 | |
|
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227 # Get the content-length of all the multiparts of this WADO-RS |
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228 # request (prevent transcoding by setting transfer-syntax to |
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229 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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230 b = DoGet(ORTHANC, url, headers = { |
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231 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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232 }).decode('utf-8', 'ignore') |
| 83 | 233 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
| 234 self.assertEqual(1, len(parts)) | |
| 235 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 236 |
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237 |
| 84 | 238 def test_server_get(self): |
| 277 | 239 try: |
| 240 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 241 except: | |
| 242 pass | |
| 243 | |
|
388
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244 try: |
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245 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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246 except: |
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247 pass |
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248 |
| 84 | 249 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 250 | |
| 251 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 252 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 253 | |
| 129 | 254 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 255 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 256 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 257 | |
| 84 | 258 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 259 self.assertEqual(5, len(sample)) |
| 84 | 260 self.assertTrue('stow' in sample) |
| 261 self.assertTrue('retrieve' in sample) | |
| 262 self.assertTrue('get' in sample) | |
| 244 | 263 self.assertTrue('wado' in sample) # New in 0.7 |
| 264 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 265 |
| 266 # application/dicom+xml | |
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131
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267 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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268 headers = { 'Accept' : 'application/dicom+xml' }), |
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269 re.MULTILINE))) |
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270 self.assertEqual(2, len(re.findall('^--', DoPost |
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271 (ORTHANC, '/dicom-web/servers/sample/get', |
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272 { 'Uri' : '/studies', |
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273 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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274 }), re.MULTILINE))) |
| 84 | 275 |
| 276 # application/dicom+json | |
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277 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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278 headers = { 'Accept' : 'application/dicom+json' }))) |
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279 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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280 { 'Uri' : '/studies', |
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281 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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282 |
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283 # application/json |
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284 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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285 headers = { 'Accept' : 'application/json' }))) |
| 84 | 286 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 287 { 'Uri' : '/studies', | |
| 288 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 289 | |
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290 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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291 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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292 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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293 { 'Uri' : '/studies' }))) |
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294 |
| 84 | 295 |
| 296 def test_server_stow(self): | |
| 297 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 298 | |
| 299 self.assertRaises(Exception, lambda: | |
| 300 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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301 { 'Resources' : [ 'nope' ], |
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302 'Synchronous' : True })) # inexisting resource |
| 84 | 303 |
| 499 | 304 l = 3 # For >= 1.10.1 |
| 305 | |
| 306 # study | |
| 307 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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308 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
| 499 | 309 'Synchronous' : True }) |
| 310 | |
| 311 self.assertEqual(l, len(r)) | |
| 312 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 84 | 313 |
| 499 | 314 # series |
| 315 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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316 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
| 499 | 317 'Synchronous' : True }) |
| 318 self.assertEqual(l, len(r)) | |
| 319 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 84 | 320 |
| 499 | 321 # instances |
| 322 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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323 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 324 'Synchronous' : True }) |
| 325 self.assertEqual(l, len(r)) | |
| 326 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 84 | 327 |
| 499 | 328 # altogether |
| 329 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 84 | 330 { 'Resources' : [ |
| 331 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 332 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 333 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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334 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 335 'Synchronous' : True }) |
| 510 | 336 # pprint.pprint(r) |
| 499 | 337 self.assertEqual(l, len(r)) |
| 338 self.assertEqual("ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17", r['Resources']['Patients'][0]) | |
| 339 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 340 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 341 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 342 | |
| 84 | 343 |
| 344 | |
| 345 def test_server_retrieve(self): | |
| 244 | 346 COUNT = 'ReceivedInstancesCount' |
| 347 #COUNT = 'Instances' # In version <= 0.6 | |
| 348 | |
| 84 | 349 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 350 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 351 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 352 | |
| 353 self.assertRaises(Exception, lambda: | |
| 354 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 355 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 356 | |
| 357 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 358 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 359 self.assertEqual(3, int(t[COUNT])) |
| 84 | 360 |
| 361 # Missing "Study" field | |
| 362 self.assertRaises(Exception, lambda: | |
| 363 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 364 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 365 | |
| 366 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 367 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 368 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 369 self.assertEqual(2, int(t[COUNT])) |
| 84 | 370 |
| 371 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 372 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 373 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 374 self.assertEqual(1, int(t[COUNT])) |
| 84 | 375 |
| 376 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 377 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 378 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 379 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 380 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 381 self.assertEqual(3, int(t[COUNT])) |
| 84 | 382 |
| 383 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 384 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 385 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 386 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 387 self.assertEqual(1, int(t[COUNT])) |
| 84 | 388 |
| 389 | |
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390 def test_bitbucket_issue_53(self): |
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391 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
| 319 | 392 # https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
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393 |
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394 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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395 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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396 |
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397 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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398 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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399 |
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400 a = DoGet(ORTHANC, '/dicom-web/studies', |
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401 headers = { 'accept' : 'application/json' }) |
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402 self.assertEqual(2, len(a)) |
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403 |
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404 b = [] |
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405 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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406 headers = { 'accept' : 'application/json' }) |
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407 self.assertEqual(1, len(a)) |
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408 b.append(a[0]['0020000D']['Value'][0]) |
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409 |
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410 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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411 headers = { 'accept' : 'application/json' }) |
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412 self.assertEqual(1, len(a)) |
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413 b.append(a[0]['0020000D']['Value'][0]) |
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414 |
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415 self.assertTrue(brainix in b) |
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416 self.assertTrue(knee in b) |
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417 |
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418 |
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419 def test_bitbucket_issue_111(self): |
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420 # Wrong serialization of empty values |
| 319 | 421 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
| 422 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 | |
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423 |
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424 # According to the standard, section F.2.5 |
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425 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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426 # null values behave as follows: If an attribute is present in |
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427 # DICOM but empty (i.e., Value Length is 0), it shall be |
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428 # preserved in the DICOM JSON attribute object containing no |
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429 # "Value", "BulkDataURI" or "InlineBinary". |
| 319 | 430 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
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431 |
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432 UploadInstance(ORTHANC, 'Issue111.dcm') |
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433 |
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434 # Test WADO-RS |
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435 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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436 self.assertEqual(1, len(a)) |
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437 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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438 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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439 self.assertEqual('SH', a[0]['00080050']['vr']) |
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440 |
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441 # Test QIDO-RS |
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442 a = DoGet(ORTHANC, '/dicom-web/studies') |
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443 self.assertEqual(1, len(a)) |
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444 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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445 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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446 self.assertEqual('SH', a[0]['00080050']['vr']) |
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447 |
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448 |
| 537 | 449 # this test fails if SeriesMetadata = "MainDicomTags" (this is expected since the reference json is the full json) |
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450 def test_wado_hierarchy(self): |
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451 def CheckJson(uri, headers = {}): |
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452 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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453 expected = json.loads(f.read()) |
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454 actual = DoGet(ORTHANC, uri, headers) |
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455 self.assertEqual(1, len(actual)) |
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456 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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457 |
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458 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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459 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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460 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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461 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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462 |
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463 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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464 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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465 headers = { 'accept' : 'application/nope' })) |
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466 |
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467 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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468 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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469 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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470 |
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471 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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472 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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473 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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474 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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475 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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476 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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477 |
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478 |
| 228 | 479 def test_wado_pixel_data(self): |
| 480 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 481 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 482 self.assertEqual(1, len(a)) | |
| 483 url = a[0]['00081190']['Value'][0] | |
| 484 | |
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485 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 486 self.assertTrue(url.startswith(prefix)) |
| 487 | |
| 488 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 489 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 490 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 491 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 492 | |
| 493 url = b[0]['7FE00010']['BulkDataURI'] | |
| 494 self.assertTrue(url.startswith(prefix)) | |
| 495 | |
| 496 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 497 | |
| 498 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 499 self.assertEqual(4, len(p[0])) | |
| 500 self.assertEqual(114486, len(p[1])) | |
| 501 | |
| 502 | |
| 503 def test_wado_hierarchy_bulk(self): | |
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504 def CheckBulk(value, bulk): |
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505 self.assertEqual(2, len(value)) |
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506 self.assertTrue('BulkDataURI' in value) |
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507 self.assertTrue('vr' in value) |
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508 self.assertEqual(value['BulkDataURI'], bulk) |
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509 |
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510 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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511 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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512 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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513 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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514 |
| 228 | 515 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 319 | 516 # the following fix was not included yet: |
| 517 # https://hg.orthanc-server.com/orthanc/rev/b88937ef597b | |
| 228 | 518 |
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519 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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520 self.assertEqual(1, len(a)) |
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521 |
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522 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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523 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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524 |
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525 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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526 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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527 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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528 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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529 |
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530 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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531 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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532 |
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533 self.assertEqual(12288, len(b)) |
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534 self.assertEqual(1, len(c)) |
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535 self.assertEqual(b, c[0]) |
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536 |
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537 |
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538 def test_bitbucket_issue_112(self): |
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539 # Wrong serialization of number values |
| 319 | 540 # https://bugs.orthanc-server.com/show_bug.cgi?id=112 |
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541 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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542 |
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543 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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544 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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545 |
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546 # This is the WADO-RS testing |
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547 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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548 self.assertEqual(1, len(a)) |
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549 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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550 |
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551 if (sys.version_info >= (3, 0)): |
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552 types = (int) |
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553 else: |
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554 types = (int, long) |
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555 |
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556 b = a[0]['00180091']['Value'][0] |
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557 self.assertTrue(isinstance(b, types)) |
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558 self.assertEqual(10, b) |
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559 |
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560 # This is the QIDO-RS testing |
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561 a = DoGet(ORTHANC, '/dicom-web/studies') |
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562 self.assertEqual(1, len(a)) |
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563 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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564 |
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565 b = a[0]['00201208']['Value'][0] |
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566 self.assertTrue(isinstance(b, types)) |
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567 self.assertEqual(1, b) |
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568 |
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569 |
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570 def test_bitbucket_issue_113(self): |
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571 # Wrong serialization of PN VR |
| 319 | 572 # https://bugs.orthanc-server.com/show_bug.cgi?id=113 |
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573 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
| 314 | 574 |
| 575 # Make sure UTF-8 encoding is used | |
| 576 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
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577 |
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578 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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579 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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580 |
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581 # This is the WADO-RS testing |
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582 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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583 self.assertEqual(1, len(a)) |
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584 |
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585 pn = a[0]['00100010'] # Patient name |
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586 self.assertEqual('PN', pn['vr']) |
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587 self.assertEqual(1, len(pn['Value'])) |
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588 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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589 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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590 |
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591 # This is the QIDO-RS testing |
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592 a = DoGet(ORTHANC, '/dicom-web/studies') |
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593 self.assertEqual(1, len(a)) |
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594 |
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595 pn = a[0]['00100010'] # Patient name |
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596 self.assertEqual('PN', pn['vr']) |
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597 self.assertEqual(1, len(pn['Value'])) |
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598 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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599 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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600 |
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601 |
| 225 | 602 def test_bitbucket_issue_96(self): |
| 603 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 319 | 604 # https://bugs.orthanc-server.com/show_bug.cgi?id=96 |
| 225 | 605 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
| 606 | |
| 228 | 607 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 608 |
| 609 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 610 self.assertEqual(1, len(a)) | |
| 228 | 611 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 612 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 613 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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614 |
| 225 | 615 url = a[0]['00081190']['Value'][0] |
| 616 | |
|
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617 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 618 self.assertTrue(url.startswith(prefix)) |
| 619 uri = url[len(prefix):] | |
| 620 | |
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621 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 622 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 623 | |
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624 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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625 self.assertEqual(1, len(b)) |
| 228 | 626 self.assertEqual(256 * 256 * 2, len(b[0])) |
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627 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
| 225 | 628 |
| 228 | 629 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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630 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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631 self.assertEqual(1, len(c)) |
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632 self.assertEqual(b[0], c[0]) |
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633 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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634 |
| 228 | 635 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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636 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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637 self.assertEqual(1, len(c)) |
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638 self.assertEqual(b[0], c[0]) |
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639 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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640 |
| 228 | 641 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 642 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 643 | |
| 644 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 645 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 646 | |
| 647 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 648 headers = { 'Accept' : 'nope' })) | |
| 649 | |
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650 |
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651 def test_qido_fields(self): |
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652 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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653 |
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654 a = DoGet(ORTHANC, '/dicom-web/studies') |
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655 self.assertEqual(1, len(a)) |
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656 self.assertFalse('00280010' in a[0]) # Rows |
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657 |
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658 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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659 self.assertEqual(1, len(a)) |
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660 self.assertTrue('00280010' in a[0]) |
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661 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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662 |
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663 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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664 self.assertEqual(0, len(a)) |
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665 |
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666 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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667 self.assertEqual(1, len(a)) |
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668 self.assertTrue('00280010' in a[0]) |
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669 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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670 |
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671 |
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672 def test_stow_errors(self): |
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673 def CheckSequences(a): |
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674 self.assertEqual(3, len(a)) |
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675 self.assertTrue('00080005' in a) |
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676 self.assertTrue('00081198' in a) |
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677 self.assertTrue('00081199' in a) |
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678 self.assertEqual('CS', a['00080005']['vr']) |
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679 self.assertEqual('SQ', a['00081198']['vr']) |
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680 self.assertEqual('SQ', a['00081199']['vr']) |
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681 |
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682 # Pushing an instance to a study that is not its parent |
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683 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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684 self.assertEqual(409, status) |
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685 CheckSequences(a) |
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686 |
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687 self.assertFalse('Value' in a['00081199']) # No success instance |
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688 |
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689 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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690 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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691 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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692 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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693 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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694 self.assertEqual(0x0110, # Processing failure |
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695 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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696 |
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697 # Pushing an instance with missing tags |
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698 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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699 self.assertEqual(400, status) |
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700 CheckSequences(a) |
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701 |
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702 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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703 self.assertFalse('Value' in a['00081199']) # No success instance |
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704 |
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705 # Pushing a file that is not in the DICOM format |
|
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706 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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707 self.assertEqual(400, status) |
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708 CheckSequences(a) |
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709 |
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710 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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711 self.assertFalse('Value' in a['00081199']) # No success instance |
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712 |
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713 # Pushing a DICOM instance with only SOP class and instance UID |
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714 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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715 self.assertEqual(400, status) |
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716 CheckSequences(a) |
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717 |
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718 self.assertFalse('Value' in a['00081199']) # No success instance |
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719 |
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720 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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721 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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722 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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723 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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724 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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725 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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726 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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727 |
|
239
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728 |
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729 def test_allowed_methods(self): |
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730 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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731 |
|
549
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diff
changeset
|
732 e = DoPutRaw(ORTHANC, '/dicom-web/studies') |
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changeset
|
733 self.assertEqual(405, int(e[0]['status'])) |
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|
734 self.assertEqual('GET,POST', e[0]['allow']) |
|
239
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735 |
|
549
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diff
changeset
|
736 e = DoDeleteRaw(ORTHANC, '/dicom-web/studies') |
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|
737 self.assertEqual(405, int(e[0]['status'])) |
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|
738 self.assertEqual('GET,POST', e[0]['allow']) |
|
241
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739 |
|
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740 |
|
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741 def test_add_server(self): |
|
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742 try: |
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743 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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744 except: |
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745 pass |
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|
746 |
| 277 | 747 try: |
| 748 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 749 except: | |
| 750 pass | |
| 751 | |
|
241
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752 l = DoGet(ORTHANC, '/dicom-web/servers') |
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753 self.assertEqual(1, len(l)) |
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754 self.assertTrue('sample' in l) |
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|
755 |
|
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756 url = 'http://localhost:8042/dicom-web/' |
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757 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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758 'Url': url, |
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759 'HttpHeaders' : { |
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760 'Hello' : 'World' |
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761 }, |
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762 'Username' : 'bob', |
| 242 | 763 'Password' : 'password', |
| 764 'UserProperty' : 'Test', | |
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765 'HasDelete' : True, |
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766 'Timeout' : 66 # New in 1.6 |
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767 }) |
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768 |
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769 l = DoGet(ORTHANC, '/dicom-web/servers') |
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770 self.assertEqual(2, len(l)) |
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771 self.assertTrue('sample' in l) |
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772 self.assertTrue('hello' in l) |
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773 |
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774 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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775 self.assertEqual(5, len(o)) |
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776 self.assertTrue('stow' in o) |
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777 self.assertTrue('retrieve' in o) |
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778 self.assertTrue('get' in o) |
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779 self.assertTrue('wado' in o) # New in 0.7 |
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780 self.assertTrue('qido' in o) # New in 0.7 |
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781 |
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782 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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783 self.assertEqual(6, len(o)) |
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784 self.assertTrue('stow' in o) |
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785 self.assertTrue('retrieve' in o) |
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786 self.assertTrue('get' in o) |
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787 self.assertTrue('wado' in o) # New in 0.7 |
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788 self.assertTrue('qido' in o) # New in 0.7 |
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789 self.assertTrue('delete' in o) # New in 0.7 |
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790 |
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791 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
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792 self.assertEqual(8, len(s['hello'])) |
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793 self.assertEqual(url, s['hello']['Url']) |
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794 self.assertEqual('bob', s['hello']['Username']) |
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795 self.assertEqual(None, s['hello']['Password']) |
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796 self.assertFalse(s['hello']['Pkcs11']) |
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797 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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798 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 799 self.assertEqual('Test', s['hello']['UserProperty']) |
|
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800 self.assertEqual('1', s['hello']['HasDelete']) |
|
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801 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
|
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802 |
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803 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
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804 |
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805 |
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806 def test_bitbucket_issue_143(self): |
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807 # WADO-RS metadata request returns "500 Internal Server Error" |
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808 # instead of "404 Not Found" for missing instance |
| 319 | 809 # https://bugs.orthanc-server.com/show_bug.cgi?id=143 |
|
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810 UploadInstance(ORTHANC, 'Issue143.dcm') |
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811 |
|
549
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812 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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813 self.assertEqual(404, int(e[0]['status'])) |
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814 |
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815 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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816 |
|
549
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817 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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818 self.assertEqual(404, int(e[0]['status'])) |
|
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819 |
|
549
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820 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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821 self.assertEqual(404, int(e[0]['status'])) |
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822 |
|
549
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823 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
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824 self.assertEqual(404, int(e[0]['status'])) |
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825 |
|
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826 |
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827 def test_encodings_qido(self): |
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828 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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829 # in the integration tests, so all the QIDO-RS requests must |
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830 # lead to a "ISO_IR 192" specific character set |
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831 def GetPatientName(dicom, onlyAlphabetic): |
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832 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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833 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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834 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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835 self.assertEqual(1, len(qido)) |
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836 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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837 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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838 if onlyAlphabetic: |
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839 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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840 else: |
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841 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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842 return qido[0]['00100010']['Value'][0] |
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843 |
| 314 | 844 # Make sure UTF-8 encoding is used |
| 845 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
| 846 | |
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847 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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848 |
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849 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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850 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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851 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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852 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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853 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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854 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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855 |
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856 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
|
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857 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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858 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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859 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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860 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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861 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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862 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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863 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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864 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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865 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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866 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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867 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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868 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
|
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869 |
|
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870 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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871 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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872 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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873 |
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|
874 |
|
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875 def test_encodings_wado_metadata(self): |
|
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876 # If querying the instance metadata, the "DefaultEncoding" |
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877 # configuration is not used, but the actual encoding |
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878 def GetEncoding(dicom, length): |
|
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879 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
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880 self.assertEqual(1, len(qido)) |
|
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881 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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882 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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883 return qido[0]['00080005']['Value'] |
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884 |
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885 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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886 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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887 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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888 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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889 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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890 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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891 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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892 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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893 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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894 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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895 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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896 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
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|
897 |
|
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|
898 |
|
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|
899 def test_rendered(self): |
|
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900 def RenderFrame(path, i): |
|
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901 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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902 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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|
903 }) |
|
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|
904 |
|
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|
905 # This image has 76 frames |
|
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|
906 path = UploadAndGetWadoPath('Multiframe.dcm') |
|
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|
907 |
|
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|
908 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
|
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|
909 |
|
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|
910 frame1 = RenderFrame(path, 1) |
|
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|
911 im = UncompressImage(frame1) |
|
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|
912 self.assertEqual("L", im.mode) |
|
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913 self.assertEqual(512, im.size[0]) |
|
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|
914 self.assertEqual(512, im.size[1]) |
|
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|
915 |
|
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|
916 im = UncompressImage(RenderFrame(path, 76)) |
|
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|
917 self.assertEqual("L", im.mode) |
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918 self.assertEqual(512, im.size[0]) |
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919 self.assertEqual(512, im.size[1]) |
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|
920 |
|
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|
921 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
|
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922 |
|
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|
923 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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924 'Uri' : '%s/rendered' % path |
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925 }) |
|
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|
926 |
|
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927 self.assertEqual(len(frame1), len(defaultFrame)) |
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928 self.assertEqual(frame1, defaultFrame) |
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|
929 |
|
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|
930 |
|
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|
931 # This image has 1 frame |
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932 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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933 |
|
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|
934 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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935 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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|
936 |
|
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937 frame1 = RenderFrame(path, 1) |
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|
938 im = UncompressImage(frame1) |
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939 self.assertEqual("L", im.mode) |
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940 self.assertEqual(512, im.size[0]) |
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941 self.assertEqual(358, im.size[1]) |
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|
942 |
|
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|
943 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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944 'Uri' : '%s/rendered' % path |
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945 }) |
|
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946 |
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947 self.assertEqual(len(frame1), len(defaultFrame)) |
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948 self.assertEqual(frame1, defaultFrame) |
|
259
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949 |
|
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test_qido_parent_attributes
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950 |
|
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test_qido_parent_attributes
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951 def test_qido_parent_attributes(self): |
|
298f80c6ccc4
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952 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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test_qido_parent_attributes
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changeset
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953 study = '2.16.840.1.113669.632.20.1211.10000357775' |
|
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954 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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|
955 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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|
956 |
|
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957 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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958 self.assertEqual(1, len(a)) |
|
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959 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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960 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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961 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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962 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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|
963 |
|
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|
964 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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|
965 self.assertEqual(1, len(a)) |
|
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|
966 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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967 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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968 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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969 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
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|
970 |
|
298f80c6ccc4
test_qido_parent_attributes
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changeset
|
971 a = DoGet(ORTHANC, '/dicom-web/series') |
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972 self.assertEqual(1, len(a)) |
|
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|
973 self.assertFalse('00080018' in a[0]) |
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974 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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975 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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976 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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977 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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diff
changeset
|
978 |
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test_qido_parent_attributes
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changeset
|
979 a = DoGet(ORTHANC, '/dicom-web/instances') |
|
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|
980 self.assertEqual(1, len(a)) |
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changeset
|
981 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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changeset
|
982 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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changeset
|
983 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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changeset
|
984 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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changeset
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985 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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changeset
|
986 |
|
298f80c6ccc4
test_qido_parent_attributes
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changeset
|
987 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
|
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changeset
|
988 self.assertEqual(1, len(a)) |
|
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test_qido_parent_attributes
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|
989 self.assertFalse('00080018' in a[0]) |
|
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changeset
|
990 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
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991 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
298f80c6ccc4
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|
992 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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changeset
|
993 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
298f80c6ccc4
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changeset
|
994 |
|
298f80c6ccc4
test_qido_parent_attributes
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parents:
249
diff
changeset
|
995 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
|
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diff
changeset
|
996 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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changeset
|
997 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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parents:
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changeset
|
998 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
298f80c6ccc4
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parents:
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changeset
|
999 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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|
1000 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1001 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
298f80c6ccc4
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diff
changeset
|
1002 |
|
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diff
changeset
|
1003 # "If {StudyInstanceUID} is not specified, all Study-level |
|
298f80c6ccc4
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parents:
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|
1004 # attributes specified in Table 6.7.1-2" => Here, |
|
298f80c6ccc4
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parents:
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diff
changeset
|
1005 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
298f80c6ccc4
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1006 # PatientName. |
|
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changeset
|
1007 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
|
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parents:
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diff
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|
1008 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
|
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changeset
|
1009 self.assertEqual(1, len(a)) |
|
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diff
changeset
|
1010 self.assertFalse('00100010' in a[0]) # PatientName |
|
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1011 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1012 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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1013 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1014 |
| 487 | 1015 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1016 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1017 self.assertEqual(1, len(a)) | |
| 1018 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1019 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1020 | |
| 1021 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
| 1022 a = DoGet(ORTHANC, '/dicom-web/series') | |
| 1023 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1024 | |
|
259
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changeset
|
1025 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
|
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diff
changeset
|
1026 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
|
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changeset
|
1027 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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parents:
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diff
changeset
|
1028 self.assertFalse('00100010' in a[0]) # PatientName |
|
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parents:
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diff
changeset
|
1029 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
298f80c6ccc4
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diff
changeset
|
1030 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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parents:
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diff
changeset
|
1031 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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diff
changeset
|
1032 |
|
298f80c6ccc4
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parents:
249
diff
changeset
|
1033 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
|
298f80c6ccc4
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parents:
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diff
changeset
|
1034 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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parents:
249
diff
changeset
|
1035 self.assertFalse('00080060' in a[0]) # Modality |
|
298f80c6ccc4
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diff
changeset
|
1036 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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diff
changeset
|
1037 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
1038 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
1039 |
|
298f80c6ccc4
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changeset
|
1040 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
|
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changeset
|
1041 self.assertEqual(1, len(a)) |
|
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changeset
|
1042 self.assertFalse('00100010' in a[0]) # PatientName |
|
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changeset
|
1043 self.assertFalse('00080060' in a[0]) # Modality |
|
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changeset
|
1044 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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changeset
|
1045 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
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diff
changeset
|
1046 |
| 487 | 1047 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1048 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1049 self.assertEqual(1, len(a)) | |
| 1050 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1051 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1052 | |
| 1053 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
| 1054 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 1055 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1056 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1057 self.assertTrue('00080060' in a[0]) # Modality | |
| 1058 | |
|
261
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260
diff
changeset
|
1059 |
|
270
082f35cb4459
test_bitbuck_issue_168
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parents:
261
diff
changeset
|
1060 #@unittest.skip("Skip this test on GDCM 2.8.4") |
|
261
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diff
changeset
|
1061 def test_bitbucket_issue_164(self): |
|
270
082f35cb4459
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|
1062 # WARNING - This makes GDCM 2.8.4 crash |
| 319 | 1063 # https://bugs.orthanc-server.com/show_bug.cgi?id=164 |
|
261
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parents:
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diff
changeset
|
1064 UploadInstance(ORTHANC, 'Issue164.dcm') |
|
b8cdb0aef4b9
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parents:
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diff
changeset
|
1065 |
|
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parents:
260
diff
changeset
|
1066 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
|
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1067 self.assertEqual(1, len(p)) |
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1068 self.assertEqual(743 * 975 * 3, len(p[0])) |
| 304 | 1069 |
|
539
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1070 metadata = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/metadata') |
|
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1071 self.assertEqual("YBR_FULL_422", metadata[0]['00280004']['Value'][0]) |
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1072 |
| 543 | 1073 # TODO |
| 1074 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1075 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1): | |
| 1076 # expectedDcmtkChecksum = '7535a11e7da0fa590c467ac9d323c5c1' | |
| 1077 # else: | |
| 1078 expectedDcmtkChecksum = 'b3662c4bfa24a0c73abb08548c63319b' | |
|
539
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1079 |
| 304 | 1080 if HasGdcmPlugin(ORTHANC): |
| 1081 self.assertTrue(ComputeMD5(p[0]) in [ | |
| 1082 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
|
539
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1083 expectedDcmtkChecksum # Fallback to DCMTK |
| 304 | 1084 ]) |
| 1085 else: | |
|
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1086 self.assertEqual(expectedDcmtkChecksum, ComputeMD5(p[0])) # DCMTK |
|
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1087 |
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1088 |
| 271 | 1089 def test_bitbucket_issue_168(self): |
| 276 | 1090 # "Plugins can't read private tags from the configuration |
| 1091 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1092 # 16.04), or if Orthanc <= 1.5.8 | |
| 319 | 1093 # https://bugs.orthanc-server.com/show_bug.cgi?id=168 |
|
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1094 |
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1095 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1096 |
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1097 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1098 self.assertEqual(1, len(a)) |
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1099 self.assertFalse('00090010' in a[0]) |
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1100 self.assertFalse('00091001' in a[0]) |
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1101 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1102 |
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1103 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1104 self.assertEqual(1, len(a)) |
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1105 self.assertFalse('00090010' in a[0]) |
|
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1106 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
|
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1107 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1108 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1109 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1110 |
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1111 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1112 self.assertEqual(1, len(a)) |
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1113 self.assertTrue('00090010' in a[0]) |
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1114 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1115 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1116 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1117 self.assertTrue('00091001' in a[0]) |
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1118 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1119 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1120 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
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1121 |
|
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1122 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1123 self.assertEqual(0, len(a)) |
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1124 |
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1125 |
|
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1126 def test_rendered_studies_series(self): |
|
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1127 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1128 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1129 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1130 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1131 |
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1132 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1133 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1134 }) |
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1135 |
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1136 im = UncompressImage(a) |
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1137 self.assertEqual("L", im.mode) |
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1138 self.assertEqual(512, im.size[0]) |
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1139 self.assertEqual(358, im.size[1]) |
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1140 |
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1141 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1142 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1143 }) |
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1144 |
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1145 self.assertEqual(len(a), len(b)) |
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1146 self.assertEqual(a, b) |
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1147 |
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1148 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1149 'Uri' : '/studies/%s/rendered' % study |
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1150 }) |
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1151 |
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1152 self.assertEqual(len(a), len(c)) |
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1153 self.assertEqual(a, c) |
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1154 |
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1155 |
|
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1156 def test_multiple_mime_accept_wado_rs(self): |
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1157 # "Multiple MIME type Accept Headers for Wado-RS" |
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1158 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1159 |
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1160 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1161 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1162 |
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1163 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1164 |
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1165 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1166 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1167 |
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1168 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1169 headers = { 'Accept' : 'application/json' }))) |
| 1170 | |
| 1171 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1172 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1173 | |
| 1174 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1175 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1176 |
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1177 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1178 headers = { 'Accept' : 'application/json, tata' }))) |
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1179 |
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1180 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1181 headers = { 'Accept' : 'toto' })) |
| 1182 | |
| 1183 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1184 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1185 |
| 1186 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1187 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1188 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1189 | |
| 1190 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1191 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1192 | |
| 1193 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1194 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
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1195 |
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1196 |
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1197 |
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1198 def test_bitbucket_issue_56(self): |
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1199 # "Case-insensitive matching over accents" => DICOMweb part |
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1200 # from AlexanderM on 2020-03-20 |
| 319 | 1201 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
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1202 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1203 |
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1204 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1205 'Level' : 'Patient', |
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1206 'Query' : { |
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1207 'PatientName' : 'Гусева*', |
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1208 }, |
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1209 }))) |
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1210 |
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1211 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1212 'Level' : 'Patient', |
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1213 'Query' : { |
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1214 'PatientName' : 'гусева*', |
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1215 }, |
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1216 }))) |
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1217 |
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1218 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1219 headers = { 'accept' : 'application/json' }))) |
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1220 |
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1221 # This line is the issue |
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1222 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1223 headers = { 'accept' : 'application/json' }))) |
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1224 |
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1225 |
|
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1226 def test_frames_transcoding(self): |
|
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1227 ACCEPT = { |
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1228 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1229 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1230 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1231 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1232 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1233 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1234 } |
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1235 |
|
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1236 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
|
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1237 truthRGB = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
| 543 | 1238 |
| 1239 # TODO | |
| 1240 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1241 # with open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.YBR.raw'), 'rb') as f: | |
| 1242 # truthRawYbr = f.read() | |
|
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1243 |
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1244 # first test: no transcoding since we accept the JPEG transfer syntax |
|
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1245 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1246 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1247 returnHeaders = True) |
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1248 self.assertEqual(1, len(a)) |
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1249 self.assertEqual(2, len(a[0])) |
|
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1250 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1251 a[0][1]['Content-Location']) |
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1252 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1253 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1254 self.assertEqual(53476, len(a[0][0])) |
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1255 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1256 |
|
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1257 # second test: no accept header -> defaults to raw explicit |
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1258 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1259 self.assertEqual(1, len(a)) |
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1260 self.assertEqual(480 * 640 * 3, len(a[0])) |
| 304 | 1261 |
|
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1262 # Orthanc is now returning the YBR image instead of the RGB |
| 543 | 1263 # TODO |
| 1264 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1265 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1) and not HasGdcmPlugin(ORTHANC): | |
| 1266 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1267 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1268 # else: | |
| 1269 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1270 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1271 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1272 |
|
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1273 ACCEPT2 = copy.deepcopy(ACCEPT) |
| 304 | 1274 if HasGdcmPlugin(ORTHANC): |
|
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1275 IS_GDCM = True |
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1276 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1277 del ACCEPT2['1.2.840.10008.1.2'] |
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1278 else: |
|
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1279 if not IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
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1280 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1281 IS_GDCM = False |
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1282 |
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1283 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1284 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1285 self.assertEqual(1, len(a)) |
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1286 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1287 |
| 543 | 1288 # TODO |
| 1289 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1290 # if IsOrthancVersionAbove(ORTHANC, 1, XX, X) and not HasGdcmPlugin(ORTHANC): | |
| 1291 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1292 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1293 # else: | |
| 1294 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1295 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1296 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1297 |
| 543 | 1298 # TODO: if not IS_GDCM and not IsOrthancVersionAbove(ORTHANC, 1, XX, X): |
| 1299 if not IS_GDCM: | |
|
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1300 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1301 |
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1302 |
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1303 # Test download using the same transfer syntax |
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1304 RESULTS = { |
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1305 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1306 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1307 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1308 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1309 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1310 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1311 } |
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1312 |
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1313 if IS_GDCM: |
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1314 # This file was failing with GDCM, as it has 2 fragments, |
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1315 # and only the first one was returned => the MD5 below is BAD |
| 304 | 1316 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
| 1317 pass | |
| 1318 | |
|
297
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|
1319 for syntax in ACCEPT2: |
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1320 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1321 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1322 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1323 self.assertEqual(1, len(a)) |
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1324 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1325 |
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1326 # Test transcoding to all the possible transfer syntaxes |
|
321
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1327 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
|
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|
1328 for syntax in ACCEPT2: |
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|
1329 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1330 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1331 returnHeaders = True) |
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1332 self.assertEqual(1, len(a)) |
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1333 self.assertEqual(2, len(a[0])) |
|
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1334 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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|
1335 a[0][1]['Content-Location']) |
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1336 self.assertEqual(ACCEPT[syntax], |
|
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1337 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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|
1338 if IS_GDCM: |
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|
1339 self.assertEqual({ |
|
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|
1340 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1341 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1342 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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|
1343 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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|
1344 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1345 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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|
1346 } [syntax], ComputeMD5(a[0][0])) |
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|
1347 else: |
|
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|
1348 self.assertEqual({ |
|
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|
1349 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1350 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1351 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
|
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|
1352 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
|
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|
1353 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
|
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|
1354 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
|
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|
1355 } [syntax], ComputeMD5(a[0][0])) |
|
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|
1356 |
|
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|
1357 |
|
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|
1358 # JPEG image with many fragments for 2 frames |
|
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|
1359 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
|
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|
1360 |
|
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diff
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|
1361 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
|
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|
1362 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
|
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|
1363 self.assertEqual(1, len(a)) |
|
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|
1364 self.assertEqual(69214, len(a[0])) |
|
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|
1365 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
|
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|
1366 |
|
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|
1367 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
|
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|
1368 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
|
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|
1369 self.assertEqual(1, len(b)) |
|
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|
1370 self.assertEqual(a[0], b[0]) |
|
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changeset
|
1371 |
|
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|
1372 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
|
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|
1373 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
|
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|
1374 self.assertEqual(2, len(b)) |
|
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|
1375 self.assertEqual(a[0], b[0]) |
|
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|
1376 self.assertEqual(a[0], b[1]) |
|
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|
1377 |
|
318
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diff
changeset
|
1378 |
|
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changeset
|
1379 def test_wado_transcoding(self): |
|
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|
1380 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
|
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1381 |
|
367
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|
1382 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
|
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|
1383 |
|
318
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|
1384 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
|
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|
1385 headers = { 'Accept' : 'nope' })) |
|
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|
1386 |
|
367
9d2a63afdb73
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changeset
|
1387 # Up to release 1.5 of the DICOMweb plugin, if no |
|
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changeset
|
1388 # transfer-syntax was specified, no transcoding occured. This |
|
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|
1389 # was because of an undefined behavior up to DICOM |
|
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|
1390 # 2016b. Starting with DICOM 2016c, the standard explicitly |
|
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|
1391 # states that the image should be transcoded to Little Endian |
|
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|
1392 # Explicit. |
|
318
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|
1393 a = DoGetMultipart(ORTHANC, '%s' % uri, |
|
367
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|
1394 headers = { }) |
|
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|
1395 self.assertEqual(1, len(a)) |
|
367
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changeset
|
1396 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
|
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|
1397 self.assertTrue(10 * compressedSize < len(a[0])) |
|
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changeset
|
1398 uncompressedSize = len(a[0]) |
|
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1399 |
|
318
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|
1400 a = DoGetMultipart(ORTHANC, '%s' % uri, |
|
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|
1401 headers = { 'Accept' : 'multipart/related' }) |
|
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1402 self.assertEqual(1, len(a)) |
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1403 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1404 self.assertEqual(uncompressedSize, len(a[0])) |
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1405 |
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1406 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1407 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1408 self.assertEqual(1, len(a)) |
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1409 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1410 self.assertEqual(uncompressedSize, len(a[0])) |
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1411 |
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1412 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1413 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1414 self.assertEqual(1, len(a)) |
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1415 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1416 self.assertEqual(compressedSize, len(a[0])) |
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1417 |
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1418 # Use source transfer syntax |
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1419 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1420 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1421 self.assertEqual(1, len(a)) |
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1422 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1423 self.assertEqual(compressedSize, len(a[0])) |
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1424 |
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1425 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1426 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1427 self.assertEqual(1, len(a)) |
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1428 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1429 self.assertEqual(uncompressedSize, len(a[0])) |
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1430 |
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1431 # Transcoding |
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1432 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1433 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1434 self.assertEqual(1, len(a)) |
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1435 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1436 self.assertNotEqual(compressedSize, len(a[0])) |
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1437 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1438 |
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1439 |
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1440 def test_compare_wado_uri_and_rs(self): |
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1441 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1442 |
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1443 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1444 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1445 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1446 |
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1447 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1448 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1449 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1450 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1451 |
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1452 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1453 truth = UncompressImage(f.read()) |
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1454 |
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1455 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1456 self.assertEqual('JPEG', im1.format) |
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1457 |
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1458 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1459 self.assertEqual('PNG', im2.format) |
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1460 |
|
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1461 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
|
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1462 self.assertEqual('JPEG', im3.format) |
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1463 |
|
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1464 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
|
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1465 headers = { 'Accept' : 'image/png' }) |
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1466 self.assertEqual('PNG', im4.format) |
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1467 |
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1468 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1469 self.assertEqual('JPEG', im5.format) |
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1470 |
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1471 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1472 self.assertEqual('PNG', im6.format) |
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1473 |
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1474 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1475 self.assertEqual('L', im.mode) |
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1476 self.assertEqual(512, im.size[0]) |
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1477 self.assertEqual(512, im.size[1]) |
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1478 |
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1479 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1480 # was redirecting to the "/preview" route of Orthanc |
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1481 # http://effbot.org/zone/pil-comparing-images.htm |
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1482 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1483 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1484 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1485 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
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1486 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1487 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
| 345 | 1488 |
| 1489 bbox = ImageChops.difference(im2, truth).getbbox() | |
| 346 | 1490 if bbox != None: |
| 1491 # Tolerance of just 1 pixel of difference (needed on Windows) | |
| 1492 #print(im2.getpixel((238,275))) # => 255 | |
| 1493 #print(truth.getpixel((238,275))) # => 254 | |
| 1494 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
| 1495 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
|
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1496 |
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1497 |
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1498 def test_issue_195(self): |
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1499 # This fails on Orthanc <= 1.9.2 |
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1500 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 |
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1501 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1502 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1503 headers = { 'Accept' : 'application/dicom+json' }) |
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1504 |
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1505 self.assertEqual(1, len(b)) |
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1506 self.assertEqual(5, len(b[0])) |
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1507 |
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1508 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1509 self.assertEqual(2, len(b[0]["00080018"])) |
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1510 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1511 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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1512 b[0]["00080018"]["Value"][0]) |
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1513 |
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1514 self.assertEqual(2, len(b[0]["0020000D"])) |
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1515 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1516 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
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1517 b[0]["0020000D"]["Value"][0]) |
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1518 |
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1519 self.assertEqual(2, len(b[0]["0020000E"])) |
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1520 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1521 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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1522 b[0]["0020000E"]["Value"][0]) |
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1523 |
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1524 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1525 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1526 |
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1527 self.assertEqual(2, len(b[0]["0008103E"])) |
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1528 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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1529 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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1530 |
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1531 |
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1532 DoDelete(ORTHANC, 'instances/%s' % a) |
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1533 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
|
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1534 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
|
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1535 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1536 headers = { 'Accept' : 'application/dicom+json' }) |
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1537 |
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1538 self.assertEqual(1, len(b)) |
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1539 self.assertEqual(5, len(b[0])) |
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1540 |
|
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1541 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
|
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1542 self.assertEqual(2, len(b[0]["00080018"])) |
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1543 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
|
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1544 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
|
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1545 b[0]["00080018"]["Value"][0]) |
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1546 |
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1547 self.assertEqual(2, len(b[0]["0020000D"])) |
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1548 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1549 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
|
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1550 b[0]["0020000D"]["Value"][0]) |
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1551 |
|
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1552 self.assertEqual(2, len(b[0]["0020000E"])) |
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1553 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1554 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
|
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|
1555 b[0]["0020000E"]["Value"][0]) |
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1556 |
|
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1557 self.assertEqual(2, len(b[0]["00084567"])) |
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1558 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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1559 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
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1560 b[0]["00084567"]["BulkDataURI"]) |
|
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1561 |
|
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1562 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
|
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1563 self.assertTrue('Content-Length: 2\r\n' in c) |
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1564 index = c.find('\r\n\r\n') |
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1565 self.assertEqual(0x42, ord(c[index + 4])) |
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1566 self.assertEqual(0x00, ord(c[index + 5])) |
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1567 |
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1568 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
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1569 self.assertEqual(1, len(b[0]["00084565"])) |
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1570 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
|
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1571 |
|
273
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1572 |
|
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1573 |
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1574 |
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1575 def test_multiframe_windowing(self): |
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1576 # Fixed in DICOMweb 1.7 |
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1577 def GetLinear(x, c, w): |
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1578 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
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1579 ymin = 0.0 |
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1580 ymax = 255.0 |
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1581 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
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1582 return ymin |
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1583 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
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1584 return ymax |
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1585 else: |
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1586 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
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1587 |
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1588 def GetLinearExact(x, c, w): |
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1589 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
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1590 ymin = 0.0 |
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1591 ymax = 255.0 |
|
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1592 if float(x) <= float(c) - float(w) / 2.0: |
|
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1593 return ymin |
|
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|
1594 elif float(x) > float(c) + float(w) / 2.0: |
|
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1595 return ymax |
|
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1596 else: |
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1597 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
|
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changeset
|
1598 |
|
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|
1599 def GetSigmoid(x, c, w): |
|
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|
1600 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
|
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|
1601 ymin = 0.0 |
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|
1602 ymax = 255.0 |
|
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|
1603 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
|
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|
1604 |
|
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|
1605 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
|
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|
1606 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
|
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|
1607 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
|
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|
1608 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
|
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|
1609 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
|
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|
1610 |
|
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|
1611 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
|
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|
1612 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
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|
1613 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
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|
1614 |
|
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|
1615 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
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|
1616 |
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|
1617 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
|
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|
1618 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
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|
1619 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
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|
1620 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
|
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|
1621 |
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|
1622 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1623 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1624 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1625 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
|
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|
1626 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
|
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|
1627 |
|
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|
1628 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
|
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|
1629 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
|
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|
1630 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
|
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|
1631 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
|
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|
1632 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
|
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|
1633 |
|
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|
1634 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
|
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|
1635 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
|
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|
1636 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1637 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1638 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
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|
1639 |
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|
1640 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1641 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
|
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|
1642 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
|
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|
1643 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
|
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|
1644 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
|
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|
1645 |
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|
1646 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1647 ri = 100.0 |
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|
1648 rs = 1.0 |
|
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|
1649 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1650 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1651 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1652 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1653 |
|
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|
1654 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1655 ri = 0.0 |
|
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|
1656 rs = 2.0 |
|
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|
1657 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1658 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
|
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|
1659 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1660 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1661 |
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|
1662 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1663 ri = 100.0 |
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|
1664 rs = 2.0 |
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|
1665 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1666 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1667 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1668 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1669 |
|
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|
1670 |
| 532 | 1671 def test_forwarded_headers(self): |
| 1672 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
| 1673 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
| 1674 | |
| 1675 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
| 533 | 1676 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) |
| 532 | 1677 |
| 1678 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1679 'host': 'my-domain' | |
| 1680 }) | |
| 1681 self.assertIn("http://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1682 | |
| 1683 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1684 'forwarded': 'host=my-domain;proto=https' | |
| 1685 }) | |
| 1686 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1687 | |
| 1688 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1): | |
| 1689 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1690 'X-Forwarded-Host': 'my-domain', | |
| 1691 'X-Forwarded-Proto': 'https' | |
| 1692 }) | |
| 1693 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1694 | |
| 1695 | |
|
551
c8d2775f0d02
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|
1696 def test_issue_216(self): |
|
558
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parents:
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diff
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|
1697 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1698 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1699 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
555
diff
changeset
|
1700 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1701 'accept': 'image/webp, */*;q=0.8, text/html, application/xhtml+xml, application/xml;q=0.9' |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1702 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1703 self.assertEqual(1, len(m)) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1704 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1705 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1706 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1707 'accept': 'text/html, application/xhtml+xml, application/xml, image/webp, */*;q=0.8' |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1708 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1709 self.assertEqual(1, len(m)) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1710 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1711 |
| 561 | 1712 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1) and IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
| 1713 # This fails on DICOMweb <= 1.13 because of the "; q=.2", | |
| 1714 # since multiple accepts were not supported | |
| 1715 # https://bugs.orthanc-server.com/show_bug.cgi?id=216 | |
| 1716 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { | |
| 1717 'accept': 'text/html, image/gif, image/jpeg, */*; q=.2, */*; q=.2' | |
| 1718 }) | |
| 1719 self.assertEqual(1, len(m)) | |
| 1720 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1721 |
| 561 | 1722 # This fails on Orthanc <= 1.12.0 because of the ";q=0.9" |
| 1723 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { | |
| 1724 'accept': 'text/html, application/xhtml+xml, application/xml;q=0.9, image/webp, */*;q=0.8' | |
| 1725 }) | |
| 1726 self.assertEqual(1, len(m)) | |
| 1727 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
|
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diff
changeset
|
1728 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1729 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1730 def test_accept_negotiation(self): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
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|
1731 def CheckBadRequest(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1732 response = DoGetRaw(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1733 'accept': accept |
| 552 | 1734 }) |
|
558
0ad170c7b6c8
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1735 self.assertEqual(int(response[0]['status']), 400) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1736 |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1737 def CheckIsJson(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1738 if accept != None: |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1739 response = DoGetRaw(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1740 'accept': accept |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1741 }) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1742 else: |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1743 response = DoGetRaw(ORTHANC, uri) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1744 self.assertEqual(int(response[0]['status']), 200) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1745 self.assertEqual(response[0]['content-type'], 'application/dicom+json') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1746 json.loads(response[1]) |
|
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1747 |
|
558
0ad170c7b6c8
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Sebastien Jodogne <s.jodogne@gmail.com>
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555
diff
changeset
|
1748 def CheckIsXml(uri, accept): |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1749 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1750 'accept': accept |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1751 }, returnHeaders = True) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1752 self.assertEqual(1, len(response)) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1753 self.assertEqual(2, len(response[0])) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1754 self.assertEqual('application/dicom+xml', response[0][1]['Content-Type']) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1755 xml.dom.minidom.parseString(response[0][0]) |
| 552 | 1756 |
|
559
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1757 def CheckIsDicom(uri, accept): |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1758 if accept != None: |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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558
diff
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|
1759 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1760 'accept': accept |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1761 }, returnHeaders = True) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1762 else: |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1763 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1764 self.assertEqual(1, len(response)) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1765 self.assertEqual(2, len(response[0])) |
|
87fc87897e7e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1766 self.assertEqual('application/dicom', response[0][1]['Content-Type']) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1767 pydicom.dcmread(BytesIO(response[0][0]), force=True) |
|
87fc87897e7e
test_accept_negotiation for multipart DICOM
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diff
changeset
|
1768 |
|
560
2db7a9041507
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1769 def CheckIsBulk(uri, accept): |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
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559
diff
changeset
|
1770 if accept != None: |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
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559
diff
changeset
|
1771 response = DoGetMultipart(ORTHANC, uri, headers = { |
|
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diff
changeset
|
1772 'accept': accept |
|
2db7a9041507
test bulk data negotiation
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559
diff
changeset
|
1773 }, returnHeaders = True) |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1774 else: |
|
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
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559
diff
changeset
|
1775 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
|
2db7a9041507
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1776 self.assertEqual(1, len(response)) |
|
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559
diff
changeset
|
1777 self.assertEqual(2, len(response[0])) |
|
2db7a9041507
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diff
changeset
|
1778 self.assertEqual('application/octet-stream', response[0][1]['Content-Type']) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1779 self.assertTrue(len(response[0][0]) > 1) |
|
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diff
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|
1780 |
|
558
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|
1781 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1782 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
|
0ad170c7b6c8
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|
1783 |
|
0ad170c7b6c8
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|
1784 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, None) |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1785 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'application/nope') |
|
0ad170c7b6c8
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|
1786 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/json') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1787 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/dicom+json') |
|
0ad170c7b6c8
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changeset
|
1788 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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changeset
|
1789 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml') |
|
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reactivation of test_issue_216, as the fix is now in the mainline
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|
1790 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/dicom+xml"') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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changeset
|
1791 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/nope"') |
|
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1792 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml; transfer-syntax=nope') |
|
551
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|
1793 |
|
559
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changeset
|
1794 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/nope') |
|
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changeset
|
1795 CheckIsDicom('/dicom-web/studies/%s' % studyUid, None) |
|
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changeset
|
1796 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related') |
|
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changeset
|
1797 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom') |
|
87fc87897e7e
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changeset
|
1798 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type="application/dicom"') |
|
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diff
changeset
|
1799 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/nope') |
|
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1800 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=*') |
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1801 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=*') |
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1802 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=nope') |
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1803 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1') |
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1804 |
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560
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1805 uri = '/dicom-web/studies/%s/series/%s/instances/%s/bulk/0010,0010' % ( |
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1806 studyUid, '1.3.12.2.1107.5.99.2.1255.30000007020811545343700000012', |
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1807 '1.2.276.0.7230010.3.1.4.2455711835.6056.1170936079.1') |
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1808 CheckIsBulk(uri, None) |
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1809 CheckBadRequest(uri, 'multipart/nope') |
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1810 CheckIsBulk(uri, 'multipart/related') |
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1811 CheckIsBulk(uri, 'multipart/related;type=application/octet-stream') |
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1812 CheckIsBulk(uri, 'multipart/related; type = "application/octet-stream" ') |
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1813 CheckBadRequest(uri, 'multipart/related; type = " application/octet-stream" ') |
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1814 CheckBadRequest(uri, 'multipart/related;type=application/nope') |
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1815 CheckBadRequest(uri, 'multipart/related;range=') |
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1816 |
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551
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1817 |
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1818 try: |
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1819 print('\nStarting the tests...') |
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1820 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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1821 |
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1822 finally: |
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1823 print('\nDone') |