Mercurial > hg > orthanc-tests

annotate Plugins/Worklists/Run.py @ 195:af8e034f4262

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preparing for 2019
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 24 Dec 2018 13:42:45 +0100
parents d468cbe1b161
children 943166deebcb
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1 #!/usr/bin/python
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2 # -*- coding: utf-8 -*-
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3
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 # Copyright (C) 2017-2019 Osimis S.A., Belgium
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9 #
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10 # This program is free software: you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License as
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12 # published by the Free Software Foundation, either version 3 of the
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13 # License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful, but
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 # General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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23
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24 import argparse
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25 import os
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26 import pprint
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27 import re
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28 import subprocess
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29 import sys
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30 import tempfile
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31 import unittest
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32 from shutil import copyfile
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34 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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35 from Toolbox import *
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36
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38 ##
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39 ## Parse the command-line arguments
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40 ##
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41
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42 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.')
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44 parser.add_argument('--server',
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45 default = 'localhost',
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46 help = 'Address of the Orthanc server to test')
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47 parser.add_argument('--rest',
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48 type = int,
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49 default = 8042,
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50 help = 'Port to the REST API')
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51 parser.add_argument('--username',
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52 default = 'alice',
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53 help = 'Username to the REST API')
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54 parser.add_argument('--password',
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55 default = 'orthanctest',
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56 help = 'Password to the REST API')
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57 parser.add_argument('--dicom',
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58 type = int,
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59 default = 4242,
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60 help = 'DICOM port of the Orthanc instance to test')
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61 parser.add_argument('options', metavar = 'N', nargs = '*',
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62 help='Arguments to Python unittest')
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64 args = parser.parse_args()
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68 ORTHANC = DefineOrthanc(server = args.server,
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69 username = args.username,
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70 password = args.password,
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71 restPort = args.rest)
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75 ##
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76 ## Toolbox
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77 ##
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78
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79 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists')))
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80 WORKING = os.path.join(DATABASE, 'Working')
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81
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82 print('Database directory: %s' % DATABASE)
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83 print('Working directory: %s' % WORKING)
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84
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85 try:
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86 os.mkdir(WORKING)
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87 except Exception as e:
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88 # The working folder has already been created
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89 pass
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91 def ClearDatabase():
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92 for f in os.listdir(WORKING):
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93 if f != 'lockfile':
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94 os.remove(os.path.join(WORKING, f))
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96 def AddToDatabase(worklist):
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97 extension = os.path.splitext(worklist)[1].lower()
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98 source = os.path.join(DATABASE, worklist)
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99 target = os.path.join(WORKING, os.path.basename(worklist) + '.wl')
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100
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101 if extension == '.dump':
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102 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', source, target ])
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103 else:
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104 copyfile(source, target)
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105
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106
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107 def RunQuery(source, ignoreTags):
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108 with tempfile.NamedTemporaryFile() as f:
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109 subprocess.check_call([ 'dump2dcm', '--write-xfer-little',
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110 os.path.join(DATABASE, source), f.name ])
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111
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112 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST',
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113 args.server, str(args.dicom), f.name ],
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114 stderr = subprocess.STDOUT).splitlines()
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115
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116 if len(filter(lambda x: x.startswith('E:'), a)) > 0:
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117 raise Exception('Error while running findscu')
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118
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119 b = map(lambda x: x[3:], filter(lambda x: (x.startswith('I: ---') or
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120 x.startswith('W: ---') or
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121 x.startswith('I: (') or
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122 x.startswith('W: (')), a))
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123 b = map(lambda x: re.sub(r'\s*#.*', '', x), b)
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124
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125 answers = []
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126 current = []
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127 isQuery = True
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128
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129 for l in b:
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130 l = l.replace('\0', '')
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131
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132 if l[0] == '-':
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133 if isQuery:
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134 isQuery = False
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135 else:
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136 # This is a separator between DICOM datasets
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137 if len(current) > 0:
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138 answers.append(current)
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139 current = []
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140
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141 else:
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142 if not isQuery:
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143 tag = l[1:10].lower()
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144 if not tag in ignoreTags:
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145 current.append(l)
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146
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147 if len(current) > 0:
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148 answers.append(current)
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149
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150 return answers
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151
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152 def CompareAnswers(expected, actual):
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153 if len(expected) != len(actual):
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154 return False
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155
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156 if len(expected) == 0:
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157 return True
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158
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159 for i in range(len(expected)):
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160 for j in range(len(actual)):
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161 if expected[i] == actual[j]:
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162 return True
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163
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164 return False
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165
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166
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167 def ParseTopLevelTags(answer):
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168 tags = {}
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169 for line in answer:
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170 m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line)
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171 tags[m.group(1)] = m.group(2).strip()
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172
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173 return tags
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174
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175
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176 ##
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177 ## The tests
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178 ##
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179
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180 class Orthanc(unittest.TestCase):
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181 def setUp(self):
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182 if (sys.version_info >= (3, 0)):
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183 # Remove annoying warnings about unclosed socket in Python 3
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184 import warnings
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185 warnings.simplefilter("ignore", ResourceWarning)
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186
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187 ClearDatabase()
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188 DoPost(ORTHANC, '/tools/execute-script', 'function IncomingWorklistRequestFilter(query, origin) return query end', 'application/lua')
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189
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190
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191 def test_single(self):
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192 for db in range(1, 11):
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193 ClearDatabase()
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194 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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195
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196 for query in range(0, 13):
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197 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
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198 '0008,0005',
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199 '0040,0004',
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200 '0040,0005',
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201 '0040,0020',
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202 ])
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203
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204 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f:
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205 expected = json.loads(f.read())
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206 self.assertTrue(CompareAnswers(expected, answers))
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207
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208
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209 def test_all(self):
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210 ClearDatabase()
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211
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212 for db in range(1, 11):
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213 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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214
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215 for query in range(0, 13):
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216 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
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217 '0008,0005',
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218 '0040,0004',
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219 '0040,0005',
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220 '0040,0020',
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221 ])
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222
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223 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f:
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224 expected = json.loads(f.read())
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225 self.assertTrue(CompareAnswers(expected, answers))
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226
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227
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228 def test_vet(self):
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229 AddToDatabase('Sequences/STATION_AET/orig.7705.dump')
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230 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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231 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump')
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232
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233 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', [])))
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234 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', [])))
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235 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', [])))
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236
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237
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238 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin")
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239 def test_filter_issuer_aet(self):
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240 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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241 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump')
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242
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243 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', [])))
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244
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245 def test_filter_issuer_aet_from_lua(self):
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246 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') # targeted at STATION_AET
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247 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANC_TEST
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248
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249 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # query is not targeting any station -> match all
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250 InstallLuaScript(ORTHANC, "\
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251 function IncomingWorklistRequestFilter(query, origin)\
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252 query['0040,0100'][1]['0040,0001'] = origin['RemoteAet']\
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253 return query\
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254 end");
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255
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256 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # now, query is targeting ORTHANCTEST -> match one
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257
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258
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259 def test_remove_aet_from_query(self):
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260 AddToDatabase('Sequences/NO_STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANCTEST
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261
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262 self.assertEqual(0, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET -> will not match
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263 InstallLuaScript(ORTHANC, "\
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264 function IncomingWorklistRequestFilter(query, origin)\
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265 query['0040,0100'][1]['0040,0001'] = nil\
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266 return query\
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267 end");
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268 self.assertEqual(1, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET but, since we have removed this field, we should get 2 queries
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269
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270 def test_encodings(self):
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271 # Check out ../../Database/Worklists/Encodings/database.dump
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272 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ'
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273 ENCODINGS = {
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274 'Arabic' : [ 'ISO_IR 127' ],
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275 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646
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276 'Cyrillic' : [ 'ISO_IR 144' ],
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277 'Greek' : [ 'ISO_IR 126' ],
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278 'Hebrew' : [ 'ISO_IR 138' ],
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279 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ],
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280 'Latin1' : [ 'ISO_IR 100' ],
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281 'Latin2' : [ 'ISO_IR 101' ],
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282 'Latin3' : [ 'ISO_IR 109' ],
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283 'Latin4' : [ 'ISO_IR 110' ],
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284 'Latin5' : [ 'ISO_IR 148' ],
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285 'Thai' : [ 'ISO_IR 166', 'tis-620' ],
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286 'Utf8' : [ 'ISO_IR 192' ],
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287 }
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288
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289 AddToDatabase('Encodings/database.dump')
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290
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291 for name, encoding in ENCODINGS.iteritems():
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292 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name))
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293 result = RunQuery('Encodings/query.dump', [])
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294
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295 self.assertEqual(1, len(result))
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296 self.assertEqual(2, len(result[0]))
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297 tags = ParseTopLevelTags(result[0])
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298
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299 if len(encoding) == 1:
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300 encoded = TEST.encode(name, 'ignore')
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301 else:
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302 encoded = TEST.encode(encoding[1], 'ignore')
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303
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304 self.assertEqual(encoding[0], tags['0008,0005'])
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305 self.assertEqual(encoded, tags['0010,0010'])
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306
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307
109
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308 def test_bitbucket_issue_49(self):
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309 def Check(encoding, expectedEncoding, expectedContent):
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310 DoPut(ORTHANC, '/tools/default-encoding', encoding)
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311 result = RunQuery('Encodings/issue49-latin1.query', [])
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312 self.assertEqual(1, len(result))
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313 self.assertEqual(2, len(result[0]))
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314 tags = ParseTopLevelTags(result[0])
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315 self.assertEqual(expectedEncoding, tags['0008,0005'])
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316 self.assertEqual(expectedContent, tags['0010,0010'])
94
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317
109
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318 AddToDatabase('Encodings/issue49-latin1.wl')
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319 Check('Ascii', 'ISO_IR 6', r'VANILL^LAURA^^^Mme')
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320 Check('Utf8', 'ISO_IR 192', r'VANILLÉ^LAURA^^^Mme')
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321 Check('Latin1', 'ISO_IR 100', u'VANILLÉ^LAURA^^^Mme'.encode('latin-1', 'ignore'))
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322
90
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323 try:
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324 print('\nStarting the tests...')
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325 unittest.main(argv = [ sys.argv[0] ] + args.options)
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326
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327 finally:
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328 print('\nDone')