Mercurial > hg > orthanc-tests

annotate Plugins/Worklists/Run.py @ 100:2af6c0fb850d

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shared copyright with osimis
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 04 Jan 2017 16:40:03 +0100
parents f2cbfaf1a9b0
children 7aee4cc64fca
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1 #!/usr/bin/python
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2 # -*- coding: utf-8 -*-
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3
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 # Copyright (C) 2017 Osimis, Belgium
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9 #
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10 # This program is free software: you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License as
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12 # published by the Free Software Foundation, either version 3 of the
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13 # License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful, but
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 # General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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22
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23
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24 import argparse
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25 import os
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26 import pprint
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27 import re
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28 import subprocess
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29 import sys
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30 import tempfile
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31 import unittest
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32
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33 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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34 from Toolbox import *
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35
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36
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37 ##
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38 ## Parse the command-line arguments
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39 ##
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40
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41 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.')
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42
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43 parser.add_argument('--server',
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44 default = 'localhost',
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45 help = 'Address of the Orthanc server to test')
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46 parser.add_argument('--rest',
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47 type = int,
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48 default = 8042,
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49 help = 'Port to the REST API')
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50 parser.add_argument('--username',
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51 default = 'alice',
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52 help = 'Username to the REST API')
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53 parser.add_argument('--password',
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54 default = 'orthanctest',
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55 help = 'Password to the REST API')
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56 parser.add_argument('--dicom',
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57 type = int,
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58 default = 4242,
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59 help = 'DICOM port of the Orthanc instance to test')
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60 parser.add_argument('options', metavar = 'N', nargs = '*',
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61 help='Arguments to Python unittest')
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62
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63 args = parser.parse_args()
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67 ORTHANC = DefineOrthanc(server = args.server,
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68 username = args.username,
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69 password = args.password,
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70 restPort = args.rest)
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74 ##
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75 ## Toolbox
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76 ##
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77
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78 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists')))
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79 WORKING = os.path.join(DATABASE, 'Working')
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80
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81 try:
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82 os.mkdir(WORKING)
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83 except Exception as e:
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84 # The working folder has already been created
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85 pass
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86
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87 def ClearDatabase():
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88 for f in os.listdir(WORKING):
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89 if f != 'lockfile':
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90 os.remove(os.path.join(WORKING, f))
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91
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92 def AddToDatabase(source):
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93 subprocess.check_call([ 'dump2dcm', '--write-xfer-little',
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94 os.path.join(DATABASE, source),
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95 os.path.join(WORKING, os.path.basename(source) + '.wl') ])
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96
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97 def RunQuery(source, ignoreTags):
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98 with tempfile.NamedTemporaryFile() as f:
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99 subprocess.check_call([ 'dump2dcm', '--write-xfer-little',
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100 os.path.join(DATABASE, source), f.name ])
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101
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102 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST',
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103 args.server, str(args.dicom), f.name ],
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104 stderr = subprocess.STDOUT).splitlines()
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105
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106 if len(filter(lambda x: x.startswith('E:'), a)) > 0:
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107 raise Exception('Error while running findscu')
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108
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109 b = map(lambda x: x[3:], filter(lambda x: x.startswith('W: ---') or x.startswith('W: ('), a))
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110 b = map(lambda x: re.sub(r'\s*#.*', '', x), b)
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111
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112 answers = []
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113 current = []
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114
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115 for l in b:
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116 if l[0] == '-':
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117 # This is a separator between DICOM datasets
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118 if len(current) > 0:
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119 answers.append(current)
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120 current = []
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121
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122 else:
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123 tag = l[1:10].lower()
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124 if not tag in ignoreTags:
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125 current.append(l)
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126
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127 if len(current) > 0:
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128 answers.append(current)
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129
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130 return answers
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131
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132 def CompareAnswers(expected, actual):
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133 if len(expected) != len(actual):
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134 return False
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135
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136 if len(expected) == 0:
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137 return True
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138
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139 for i in range(len(expected)):
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140 for j in range(len(actual)):
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141 if expected[i] == actual[j]:
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142 return True
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143
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144 return False
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145
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146
94
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147 def ParseTopLevelTags(answer):
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148 tags = {}
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149 for line in answer:
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150 m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line)
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151 tags[m.group(1)] = m.group(2).strip()
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152
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153 return tags
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154
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155
90
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156 ##
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157 ## The tests
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158 ##
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159
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160 class Orthanc(unittest.TestCase):
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161 def setUp(self):
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162 if (sys.version_info >= (3, 0)):
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163 # Remove annoying warnings about unclosed socket in Python 3
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164 import warnings
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165 warnings.simplefilter("ignore", ResourceWarning)
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166
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167 ClearDatabase()
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168
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169
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170 def test_single(self):
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171 for db in range(1, 11):
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172 ClearDatabase()
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173 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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174
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175 for query in range(0, 13):
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176 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
90
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177 '0008,0005',
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178 '0040,0004',
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179 '0040,0005',
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180 '0040,0020',
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181 ])
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182
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183 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f:
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184 expected = json.loads(f.read())
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185 self.assertTrue(CompareAnswers(expected, answers))
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186
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187
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188 def test_all(self):
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189 ClearDatabase()
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190
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191 for db in range(1, 11):
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192 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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193
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194 for query in range(0, 13):
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195 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
90
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196 '0008,0005',
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197 '0040,0004',
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198 '0040,0005',
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199 '0040,0020',
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200 ])
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201
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202 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f:
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203 expected = json.loads(f.read())
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204 self.assertTrue(CompareAnswers(expected, answers))
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205
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206
93
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207 def test_vet(self):
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208 AddToDatabase('Sequences/STATION_AET/orig.7705.dump')
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209 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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210 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump')
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211
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212 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', [])))
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213 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', [])))
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214 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', [])))
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215
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216
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217 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin")
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218 def test_filter_issuer_aet(self):
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219 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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220 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump')
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221
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222 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', [])))
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223
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224
94
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225 def test_encodings(self):
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226 # Check out ../../Database/Worklists/Encodings/database.dump
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227 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ'
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228 ENCODINGS = {
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229 'Arabic' : [ 'ISO_IR 127' ],
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230 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646
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231 'Cyrillic' : [ 'ISO_IR 144' ],
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232 'Greek' : [ 'ISO_IR 126' ],
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233 'Hebrew' : [ 'ISO_IR 138' ],
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234 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ],
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235 'Latin1' : [ 'ISO_IR 100' ],
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236 'Latin2' : [ 'ISO_IR 101' ],
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237 'Latin3' : [ 'ISO_IR 109' ],
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238 'Latin4' : [ 'ISO_IR 110' ],
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239 'Latin5' : [ 'ISO_IR 148' ],
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240 'Thai' : [ 'ISO_IR 166', 'tis-620' ],
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241 'Utf8' : [ 'ISO_IR 192' ],
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242 }
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243
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244 AddToDatabase('Encodings/database.dump')
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245
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246 for name, encoding in ENCODINGS.iteritems():
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247 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name))
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248 result = RunQuery('Encodings/query.dump', [])
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249
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250 self.assertEqual(1, len(result))
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251 self.assertEqual(2, len(result[0]))
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252 tags = ParseTopLevelTags(result[0])
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253
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254 if len(encoding) == 1:
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255 encoded = TEST.encode(name, 'ignore')
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256 else:
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257 encoded = TEST.encode(encoding[1], 'ignore')
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258
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259 self.assertEqual(encoding[0], tags['0008,0005'])
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260 self.assertEqual(encoded, tags['0010,0010'])
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261
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262
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263
90
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264
afbac3eb28a5 integration tests of worklists
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265 try:
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266 print('\nStarting the tests...')
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267 unittest.main(argv = [ sys.argv[0] ] + args.options)
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268
afbac3eb28a5 integration tests of worklists
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269 finally:
afbac3eb28a5 integration tests of worklists
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270 print('\nDone')