Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 657:9582c37652f4
Added tag Orthanc-1.12.4 for changeset 7bfc8992ab8f
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 05 Jun 2024 17:53:36 +0200 |
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1 #!/usr/bin/python3 |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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10 # Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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11 # |
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12 # This program is free software: you can redistribute it and/or |
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13 # modify it under the terms of the GNU General Public License as |
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14 # published by the Free Software Foundation, either version 3 of the |
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15 # License, or (at your option) any later version. |
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16 # |
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17 # This program is distributed in the hope that it will be useful, but |
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18 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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20 # General Public License for more details. |
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21 # |
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22 # You should have received a copy of the GNU General Public License |
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23 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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24 |
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25 |
85 | 26 |
27 # You must add the following to the configuration file: | |
28 # | |
29 # "DicomWeb" : { | |
30 # "Servers" : { | |
31 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
32 # } | |
33 # } | |
34 | |
35 | |
36 | |
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37 import argparse |
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38 import copy |
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39 import os |
33 | 40 import pprint |
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41 import pydicom |
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42 import re |
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43 import sys |
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44 import unittest |
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45 import xml.dom.minidom |
575 | 46 import time |
304 | 47 from PIL import ImageChops |
563 | 48 from io import BytesIO |
33 | 49 from DicomWeb import * |
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50 |
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51 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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52 from Toolbox import * |
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53 |
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54 |
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55 ## |
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56 ## Parse the command-line arguments |
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57 ## |
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58 |
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59 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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60 |
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61 parser.add_argument('--server', |
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62 default = 'localhost', |
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63 help = 'Address of the Orthanc server to test') |
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64 parser.add_argument('--rest', |
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65 type = int, |
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66 default = 8042, |
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67 help = 'Port to the REST API') |
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68 parser.add_argument('--username', |
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69 default = 'alice', |
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70 help = 'Username to the REST API') |
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71 parser.add_argument('--password', |
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72 default = 'orthanctest', |
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73 help = 'Password to the REST API') |
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74 parser.add_argument('--wado', |
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75 default = '/wado', |
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76 help = 'Path to the WADO API') |
33 | 77 parser.add_argument('--dicomweb', |
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78 default = '/dicom-web/', |
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79 help = 'Path to the DICOMweb API') |
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80 parser.add_argument('--force', help = 'Do not warn the user', |
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81 action = 'store_true') |
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82 parser.add_argument('options', metavar = 'N', nargs = '*', |
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83 help='Arguments to Python unittest') |
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84 |
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85 args = parser.parse_args() |
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86 |
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87 |
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88 ## |
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89 ## Configure the testing context |
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90 ## |
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91 |
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92 if not args.force: |
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93 print(""" |
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94 WARNING: This test will remove all the content of your |
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95 Orthanc instance running on %s! |
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96 |
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97 Are you sure ["yes" to go on]?""" % args.server) |
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98 |
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99 if sys.stdin.readline().strip() != 'yes': |
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100 print('Aborting...') |
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101 exit(0) |
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102 |
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103 |
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104 ORTHANC = DefineOrthanc(server = args.server, |
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105 username = args.username, |
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106 password = args.password, |
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107 restPort = args.rest) |
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108 |
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109 |
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110 ## |
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111 ## The tests |
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112 ## |
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113 |
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114 |
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115 def UploadAndGetWadoPath(dicom): |
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116 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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117 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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118 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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119 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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120 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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121 |
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122 |
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123 |
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124 class Orthanc(unittest.TestCase): |
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125 def setUp(self): |
83 | 126 if (sys.version_info >= (3, 0)): |
127 # Remove annoying warnings about unclosed socket in Python 3 | |
128 import warnings | |
129 warnings.simplefilter("ignore", ResourceWarning) | |
130 | |
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131 #print("In test: ", self._testMethodName) |
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132 |
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133 DropOrthanc(ORTHANC) |
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134 |
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135 def test_wado_dicom(self): |
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136 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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137 |
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138 SIZE = 169478 |
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139 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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140 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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141 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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142 |
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143 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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144 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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145 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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146 |
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147 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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148 self.assertEqual(SIZE, len(dicom)) |
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149 |
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150 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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151 self.assertEqual(SIZE, len(dicom)) |
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152 |
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153 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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154 self.assertEqual(SIZE, len(dicom)) |
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155 |
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156 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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157 self.assertEqual(SIZE, len(dicom)) |
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158 |
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159 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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160 self.assertEqual(SIZE, len(dicom)) |
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161 |
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162 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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163 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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164 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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165 |
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166 def test_wado_image(self): |
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167 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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168 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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169 |
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170 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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171 self.assertEqual('JPEG', im.format) |
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172 self.assertEqual('L', im.mode) |
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173 self.assertEqual(512, im.size[0]) |
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174 self.assertEqual(358, im.size[1]) |
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175 |
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176 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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177 self.assertEqual('JPEG', im.format) |
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178 |
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179 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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180 self.assertEqual('PNG', im.format) |
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181 self.assertEqual('L', im.mode) |
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182 self.assertEqual(512, im.size[0]) |
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183 self.assertEqual(358, im.size[1]) |
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184 |
33 | 185 def test_stow(self): |
186 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
187 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
188 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
189 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
190 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
191 | |
227
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192 self.assertEqual(4, len(a)) |
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193 |
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194 # Specific character set |
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195 self.assertTrue('00080005' in a) |
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196 self.assertEqual('CS', a['00080005']['vr']) |
33 | 197 |
198 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
227
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199 self.assertEqual('UR', a['00081190']['vr']) |
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200 |
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201 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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202 self.assertEqual('SQ', a['00081198']['vr']) |
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203 |
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204 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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205 self.assertEqual('SQ', a['00081199']['vr']) |
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206 |
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207 b = a['00081199']['Value'][0] |
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208 |
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209 # Referenced SOP class UID |
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210 self.assertEqual('UI', b['00081150']['vr']) |
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211 self.assertEqual(1, len(b['00081150']['Value'])) |
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212 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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213 |
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214 # Referenced SOP instance UID |
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215 self.assertEqual('UI', b['00081155']['vr']) |
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216 self.assertEqual(1, len(b['00081155']['Value'])) |
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217 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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218 |
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219 # Retrieve URL |
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220 self.assertEqual('UR', b['00081190']['vr']) |
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221 self.assertEqual(1, len(b['00081190']['Value'])) |
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222 self.assertTrue(b['00081190']['Value'][0]. |
33 | 223 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
224 | |
83 | 225 # Remove the "http://localhost:8042" prefix |
226 url = a['00081190']['Value'][0] | |
227 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
228 | |
367
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229 # Get the content-length of all the multiparts of this WADO-RS |
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230 # request (prevent transcoding by setting transfer-syntax to |
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231 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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232 b = DoGet(ORTHANC, url, headers = { |
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233 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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234 }).decode('utf-8', 'ignore') |
83 | 235 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
236 self.assertEqual(1, len(parts)) | |
237 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
33 | 238 |
227
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239 |
84 | 240 def test_server_get(self): |
277 | 241 try: |
242 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
243 except: | |
244 pass | |
245 | |
388
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246 try: |
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247 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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248 except: |
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249 pass |
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250 |
84 | 251 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
252 | |
253 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
254 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
255 | |
129 | 256 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
257 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
258 self.assertEqual('alice', serversReadback['sample']['Username']) | |
259 | |
84 | 260 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
244 | 261 self.assertEqual(5, len(sample)) |
84 | 262 self.assertTrue('stow' in sample) |
263 self.assertTrue('retrieve' in sample) | |
264 self.assertTrue('get' in sample) | |
244 | 265 self.assertTrue('wado' in sample) # New in 0.7 |
266 self.assertTrue('qido' in sample) # New in 0.7 | |
84 | 267 |
268 # application/dicom+xml | |
131
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269 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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270 headers = { 'Accept' : 'application/dicom+xml' }), |
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271 re.MULTILINE))) |
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272 self.assertEqual(2, len(re.findall('^--', DoPost |
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273 (ORTHANC, '/dicom-web/servers/sample/get', |
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274 { 'Uri' : '/studies', |
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275 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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276 }), re.MULTILINE))) |
84 | 277 |
278 # application/dicom+json | |
131
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279 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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280 headers = { 'Accept' : 'application/dicom+json' }))) |
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281 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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282 { 'Uri' : '/studies', |
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283 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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284 |
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285 # application/json |
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286 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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287 headers = { 'Accept' : 'application/json' }))) |
84 | 288 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
289 { 'Uri' : '/studies', | |
290 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
291 | |
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292 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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293 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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294 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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295 { 'Uri' : '/studies' }))) |
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296 |
84 | 297 |
298 def test_server_stow(self): | |
299 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
300 | |
301 self.assertRaises(Exception, lambda: | |
302 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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303 { 'Resources' : [ 'nope' ], |
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304 'Synchronous' : True })) # inexisting resource |
84 | 305 |
499 | 306 l = 3 # For >= 1.10.1 |
307 | |
308 # study | |
309 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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310 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
499 | 311 'Synchronous' : True }) |
312 | |
313 self.assertEqual(l, len(r)) | |
314 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
84 | 315 |
499 | 316 # series |
317 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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318 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
499 | 319 'Synchronous' : True }) |
320 self.assertEqual(l, len(r)) | |
321 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
84 | 322 |
499 | 323 # instances |
324 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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325 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
499 | 326 'Synchronous' : True }) |
327 self.assertEqual(l, len(r)) | |
328 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
84 | 329 |
499 | 330 # altogether |
331 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
84 | 332 { 'Resources' : [ |
333 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
334 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
335 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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336 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
499 | 337 'Synchronous' : True }) |
510 | 338 # pprint.pprint(r) |
499 | 339 self.assertEqual(l, len(r)) |
340 self.assertEqual("ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17", r['Resources']['Patients'][0]) | |
341 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
342 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
343 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
344 | |
84 | 345 |
346 | |
347 def test_server_retrieve(self): | |
244 | 348 COUNT = 'ReceivedInstancesCount' |
349 #COUNT = 'Instances' # In version <= 0.6 | |
350 | |
84 | 351 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
352 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
353 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
354 | |
355 self.assertRaises(Exception, lambda: | |
356 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
357 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
358 | |
359 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
360 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
244 | 361 self.assertEqual(3, int(t[COUNT])) |
84 | 362 |
363 # Missing "Study" field | |
364 self.assertRaises(Exception, lambda: | |
365 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
366 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
367 | |
368 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
369 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
370 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
244 | 371 self.assertEqual(2, int(t[COUNT])) |
84 | 372 |
373 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
374 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
375 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
244 | 376 self.assertEqual(1, int(t[COUNT])) |
84 | 377 |
378 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
379 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
380 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
381 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
382 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
244 | 383 self.assertEqual(3, int(t[COUNT])) |
84 | 384 |
385 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
386 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
387 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
388 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
244 | 389 self.assertEqual(1, int(t[COUNT])) |
84 | 390 |
391 | |
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392 def test_bitbucket_issue_53(self): |
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393 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
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394 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=53 |
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395 |
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396 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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397 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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398 |
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399 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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400 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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401 |
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402 a = DoGet(ORTHANC, '/dicom-web/studies', |
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403 headers = { 'accept' : 'application/json' }) |
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404 self.assertEqual(2, len(a)) |
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405 |
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406 b = [] |
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407 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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408 headers = { 'accept' : 'application/json' }) |
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409 self.assertEqual(1, len(a)) |
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410 b.append(a[0]['0020000D']['Value'][0]) |
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411 |
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412 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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413 headers = { 'accept' : 'application/json' }) |
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414 self.assertEqual(1, len(a)) |
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415 b.append(a[0]['0020000D']['Value'][0]) |
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416 |
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417 self.assertTrue(brainix in b) |
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418 self.assertTrue(knee in b) |
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419 |
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421 def test_bitbucket_issue_111(self): |
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422 # Wrong serialization of empty values |
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423 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=111 |
319 | 424 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 |
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425 |
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426 # According to the standard, section F.2.5 |
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427 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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428 # null values behave as follows: If an attribute is present in |
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429 # DICOM but empty (i.e., Value Length is 0), it shall be |
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430 # preserved in the DICOM JSON attribute object containing no |
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431 # "Value", "BulkDataURI" or "InlineBinary". |
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432 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=111 |
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433 |
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434 UploadInstance(ORTHANC, 'Issue111.dcm') |
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435 |
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436 # Test WADO-RS |
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437 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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438 self.assertEqual(1, len(a)) |
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439 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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440 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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441 self.assertEqual('SH', a[0]['00080050']['vr']) |
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442 |
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443 # Test QIDO-RS |
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444 a = DoGet(ORTHANC, '/dicom-web/studies') |
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445 self.assertEqual(1, len(a)) |
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446 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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447 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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448 self.assertEqual('SH', a[0]['00080050']['vr']) |
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449 |
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450 |
537 | 451 # this test fails if SeriesMetadata = "MainDicomTags" (this is expected since the reference json is the full json) |
222
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452 def test_wado_hierarchy(self): |
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453 def CheckJson(uri, headers = {}): |
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454 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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455 expected = json.loads(f.read()) |
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456 actual = DoGet(ORTHANC, uri, headers) |
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457 self.assertEqual(1, len(actual)) |
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458 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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459 |
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460 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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461 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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462 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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463 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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464 |
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465 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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466 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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467 headers = { 'accept' : 'application/nope' })) |
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468 |
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469 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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470 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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471 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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472 |
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473 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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474 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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475 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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476 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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477 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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478 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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479 |
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480 |
228 | 481 def test_wado_pixel_data(self): |
482 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
483 a = DoGet(ORTHANC, '/dicom-web/instances') | |
484 self.assertEqual(1, len(a)) | |
485 url = a[0]['00081190']['Value'][0] | |
486 | |
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487 prefix = 'http://%s:%s' % (args.server, args.rest) |
228 | 488 self.assertTrue(url.startswith(prefix)) |
489 | |
490 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
491 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
492 self.assertEqual(2, len(b[0]['7FE00010'])) | |
493 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
494 | |
495 url = b[0]['7FE00010']['BulkDataURI'] | |
496 self.assertTrue(url.startswith(prefix)) | |
497 | |
498 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
499 | |
500 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
501 self.assertEqual(4, len(p[0])) | |
502 self.assertEqual(114486, len(p[1])) | |
503 | |
504 | |
505 def test_wado_hierarchy_bulk(self): | |
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506 def CheckBulk(value, bulk): |
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507 self.assertEqual(2, len(value)) |
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508 self.assertTrue('BulkDataURI' in value) |
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509 self.assertTrue('vr' in value) |
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510 self.assertEqual(value['BulkDataURI'], bulk) |
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511 |
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512 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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513 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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514 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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515 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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516 |
228 | 517 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
319 | 518 # the following fix was not included yet: |
586 | 519 # https://orthanc.uclouvain.be/hg/orthanc/rev/b88937ef597b |
228 | 520 |
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521 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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522 self.assertEqual(1, len(a)) |
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523 |
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524 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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525 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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526 |
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527 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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528 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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529 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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530 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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531 |
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532 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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533 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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534 |
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535 self.assertEqual(12288, len(b)) |
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536 self.assertEqual(1, len(c)) |
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537 self.assertEqual(b, c[0]) |
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538 |
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539 |
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540 def test_bitbucket_issue_112(self): |
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541 # Wrong serialization of number values |
588
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542 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=112 |
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543 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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544 |
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545 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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546 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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547 |
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548 # This is the WADO-RS testing |
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549 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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550 self.assertEqual(1, len(a)) |
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551 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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552 |
226
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553 if (sys.version_info >= (3, 0)): |
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554 types = (int) |
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555 else: |
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556 types = (int, long) |
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557 |
222
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558 b = a[0]['00180091']['Value'][0] |
226
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559 self.assertTrue(isinstance(b, types)) |
222
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560 self.assertEqual(10, b) |
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561 |
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562 # This is the QIDO-RS testing |
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563 a = DoGet(ORTHANC, '/dicom-web/studies') |
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564 self.assertEqual(1, len(a)) |
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565 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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566 |
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567 b = a[0]['00201208']['Value'][0] |
226
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568 self.assertTrue(isinstance(b, types)) |
222
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569 self.assertEqual(1, b) |
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570 |
222
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571 |
224
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572 def test_bitbucket_issue_113(self): |
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573 # Wrong serialization of PN VR |
588
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574 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=113 |
224
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575 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
314 | 576 |
577 # Make sure UTF-8 encoding is used | |
578 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
224
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579 |
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580 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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581 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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582 |
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583 # This is the WADO-RS testing |
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584 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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585 self.assertEqual(1, len(a)) |
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586 |
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587 pn = a[0]['00100010'] # Patient name |
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588 self.assertEqual('PN', pn['vr']) |
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589 self.assertEqual(1, len(pn['Value'])) |
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590 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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591 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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592 |
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593 # This is the QIDO-RS testing |
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594 a = DoGet(ORTHANC, '/dicom-web/studies') |
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595 self.assertEqual(1, len(a)) |
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596 |
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597 pn = a[0]['00100010'] # Patient name |
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598 self.assertEqual('PN', pn['vr']) |
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599 self.assertEqual(1, len(pn['Value'])) |
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600 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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601 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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602 |
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603 |
225 | 604 def test_bitbucket_issue_96(self): |
605 # WADO-RS RetrieveFrames rejects valid accept headers | |
588
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606 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=96 |
225 | 607 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
608 | |
228 | 609 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
225 | 610 |
611 a = DoGet(ORTHANC, '/dicom-web/instances') | |
612 self.assertEqual(1, len(a)) | |
228 | 613 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
614 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
615 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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616 |
225 | 617 url = a[0]['00081190']['Value'][0] |
618 | |
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619 prefix = 'http://%s:%s' % (args.server, args.rest) |
225 | 620 self.assertTrue(url.startswith(prefix)) |
621 uri = url[len(prefix):] | |
622 | |
226
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623 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
228 | 624 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
625 | |
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626 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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627 self.assertEqual(1, len(b)) |
228 | 628 self.assertEqual(256 * 256 * 2, len(b[0])) |
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629 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
225 | 630 |
228 | 631 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
226
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632 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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633 self.assertEqual(1, len(c)) |
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634 self.assertEqual(b[0], c[0]) |
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635 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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636 |
228 | 637 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
226
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638 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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639 self.assertEqual(1, len(c)) |
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640 self.assertEqual(b[0], c[0]) |
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641 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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642 |
228 | 643 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
644 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
645 | |
646 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
647 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
648 | |
649 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
650 headers = { 'Accept' : 'nope' })) | |
651 | |
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652 |
608 | 653 def test_bugzilla_219(self): |
654 # WADO-RS RetrieveFrames shall transcode ExplicitBigEndian to ExplicitLittleEndian | |
655 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=219 | |
656 | |
657 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 17, 0): | |
658 | |
659 UploadInstance(ORTHANC, 'TransferSyntaxes/1.2.840.10008.1.2.2.dcm') | |
660 | |
661 r = DoGetMultipart(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.21.848.246800003.0.1952805748.3/series/1.2.840.113619.2.21.24680000.700.0.1952805748.3.0/instances/1.2.840.1136190195280574824680000700.3.0.1.19970424140438/frames/1', {}, True ) | |
662 self.assertIn('transfer-syntax=1.2.840.10008.1.2.1', r[0][1]['Content-Type']) | |
663 | |
664 | |
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665 def test_qido_fields(self): |
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666 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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667 |
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668 a = DoGet(ORTHANC, '/dicom-web/studies') |
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669 self.assertEqual(1, len(a)) |
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670 self.assertFalse('00280010' in a[0]) # Rows |
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671 |
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672 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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673 self.assertEqual(1, len(a)) |
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674 self.assertTrue('00280010' in a[0]) |
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675 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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676 |
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677 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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678 self.assertEqual(0, len(a)) |
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679 |
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680 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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681 self.assertEqual(1, len(a)) |
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682 self.assertTrue('00280010' in a[0]) |
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683 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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684 |
654 | 685 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 17, 0): |
686 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.176.2025.1499492.7391.1171285944.390/series/1.2.840.113619.2.176.2025.1499492.7391.1171285944.394/instances?includefield=00081140') | |
687 self.assertEqual(1, len(a)) | |
688 self.assertTrue('00081140' in a[0]) | |
689 self.assertEqual(2, len(a[0]['00081140']['Value'])) | |
690 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286241.719', a[0]['00081140']['Value'][0]['00081155']['Value'][0]) | |
691 | |
692 | |
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693 |
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694 def test_stow_errors(self): |
398
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695 def CheckSequences(a): |
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696 self.assertEqual(3, len(a)) |
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697 self.assertTrue('00080005' in a) |
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698 self.assertTrue('00081198' in a) |
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699 self.assertTrue('00081199' in a) |
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700 self.assertEqual('CS', a['00080005']['vr']) |
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701 self.assertEqual('SQ', a['00081198']['vr']) |
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702 self.assertEqual('SQ', a['00081199']['vr']) |
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703 |
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704 # Pushing an instance to a study that is not its parent |
398
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705 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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706 self.assertEqual(409, status) |
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707 CheckSequences(a) |
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708 |
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709 self.assertFalse('Value' in a['00081199']) # No success instance |
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710 |
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711 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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712 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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713 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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714 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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715 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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716 self.assertEqual(0x0110, # Processing failure |
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717 a['00081198']['Value'][0]['00081197']['Value'][0]) |
227
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718 |
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719 # Pushing an instance with missing tags |
398
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720 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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721 self.assertEqual(400, status) |
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722 CheckSequences(a) |
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723 |
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724 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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725 self.assertFalse('Value' in a['00081199']) # No success instance |
227
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726 |
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727 # Pushing a file that is not in the DICOM format |
398
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728 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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729 self.assertEqual(400, status) |
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730 CheckSequences(a) |
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731 |
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732 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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733 self.assertFalse('Value' in a['00081199']) # No success instance |
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734 |
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735 # Pushing a DICOM instance with only SOP class and instance UID |
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736 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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737 self.assertEqual(400, status) |
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738 CheckSequences(a) |
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739 |
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|
740 self.assertFalse('Value' in a['00081199']) # No success instance |
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741 |
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742 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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743 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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|
744 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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|
745 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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changeset
|
746 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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|
747 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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748 a['00081198']['Value'][0]['00081197']['Value'][0]) |
227
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749 |
239
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dicomweb: test_allowed_methods
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750 |
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|
751 def test_allowed_methods(self): |
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752 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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753 |
549
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543
diff
changeset
|
754 e = DoPutRaw(ORTHANC, '/dicom-web/studies') |
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|
755 self.assertEqual(405, int(e[0]['status'])) |
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|
756 self.assertEqual('GET,POST', e[0]['allow']) |
239
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|
757 |
549
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diff
changeset
|
758 e = DoDeleteRaw(ORTHANC, '/dicom-web/studies') |
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|
759 self.assertEqual(405, int(e[0]['status'])) |
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changeset
|
760 self.assertEqual('GET,POST', e[0]['allow']) |
241
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dicomweb: test_add_server
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761 |
adc6372b8820
dicomweb: test_add_server
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|
762 |
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763 def test_add_server(self): |
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764 try: |
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765 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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766 except: |
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767 pass |
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768 |
277 | 769 try: |
770 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
771 except: | |
772 pass | |
773 | |
241
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774 l = DoGet(ORTHANC, '/dicom-web/servers') |
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775 self.assertEqual(1, len(l)) |
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776 self.assertTrue('sample' in l) |
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|
777 |
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|
778 url = 'http://localhost:8042/dicom-web/' |
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779 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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780 'Url': url, |
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781 'HttpHeaders' : { |
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782 'Hello' : 'World' |
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783 }, |
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784 'Username' : 'bob', |
242 | 785 'Password' : 'password', |
786 'UserProperty' : 'Test', | |
249
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787 'HasDelete' : True, |
381
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788 'Timeout' : 66 # New in 1.6 |
241
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789 }) |
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790 |
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791 l = DoGet(ORTHANC, '/dicom-web/servers') |
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792 self.assertEqual(2, len(l)) |
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793 self.assertTrue('sample' in l) |
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794 self.assertTrue('hello' in l) |
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795 |
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796 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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797 self.assertEqual(5, len(o)) |
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798 self.assertTrue('stow' in o) |
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799 self.assertTrue('retrieve' in o) |
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800 self.assertTrue('get' in o) |
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801 self.assertTrue('wado' in o) # New in 0.7 |
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802 self.assertTrue('qido' in o) # New in 0.7 |
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803 |
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804 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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805 self.assertEqual(6, len(o)) |
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806 self.assertTrue('stow' in o) |
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807 self.assertTrue('retrieve' in o) |
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808 self.assertTrue('get' in o) |
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809 self.assertTrue('wado' in o) # New in 0.7 |
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810 self.assertTrue('qido' in o) # New in 0.7 |
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811 self.assertTrue('delete' in o) # New in 0.7 |
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812 |
241
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813 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
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814 self.assertEqual(8, len(s['hello'])) |
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815 self.assertEqual(url, s['hello']['Url']) |
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816 self.assertEqual('bob', s['hello']['Username']) |
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817 self.assertEqual(None, s['hello']['Password']) |
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818 self.assertFalse(s['hello']['Pkcs11']) |
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819 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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820 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
242 | 821 self.assertEqual('Test', s['hello']['UserProperty']) |
249
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822 self.assertEqual('1', s['hello']['HasDelete']) |
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823 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
241
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824 |
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825 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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826 |
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827 |
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828 def test_bitbucket_issue_143(self): |
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829 # WADO-RS metadata request returns "500 Internal Server Error" |
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830 # instead of "404 Not Found" for missing instance |
588
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831 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=143 |
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832 UploadInstance(ORTHANC, 'Issue143.dcm') |
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833 |
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834 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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835 self.assertEqual(404, int(e[0]['status'])) |
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836 |
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837 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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838 |
549
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839 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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840 self.assertEqual(404, int(e[0]['status'])) |
246
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841 |
549
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842 e = DoGetRaw(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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843 self.assertEqual(404, int(e[0]['status'])) |
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844 |
549
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845 e = DoGetRaw(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
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846 self.assertEqual(404, int(e[0]['status'])) |
246
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847 |
248
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848 |
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849 def test_encodings_qido(self): |
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850 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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851 # in the integration tests, so all the QIDO-RS requests must |
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852 # lead to a "ISO_IR 192" specific character set |
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853 def GetPatientName(dicom, onlyAlphabetic): |
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854 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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855 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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856 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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857 self.assertEqual(1, len(qido)) |
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858 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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859 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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860 if onlyAlphabetic: |
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861 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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862 else: |
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863 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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864 return qido[0]['00100010']['Value'][0] |
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865 |
314 | 866 # Make sure UTF-8 encoding is used |
867 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
868 | |
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869 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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870 |
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871 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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872 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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873 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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874 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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875 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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876 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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877 |
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878 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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879 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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880 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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881 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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882 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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883 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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884 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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885 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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886 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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887 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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888 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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889 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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890 self.assertEqual(u'ヤマダ^タロウ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
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891 |
249
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892 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
248
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893 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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894 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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|
895 |
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|
896 |
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897 def test_encodings_wado_metadata(self): |
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898 # If querying the instance metadata, the "DefaultEncoding" |
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|
899 # configuration is not used, but the actual encoding |
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|
900 def GetEncoding(dicom, length): |
249
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901 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
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902 self.assertEqual(1, len(qido)) |
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903 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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904 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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905 return qido[0]['00080005']['Value'] |
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|
906 |
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907 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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908 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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909 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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910 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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911 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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912 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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913 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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914 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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915 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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916 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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917 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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918 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
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|
919 |
249
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|
920 |
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921 def test_rendered(self): |
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922 def RenderFrame(path, i): |
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923 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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924 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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925 }) |
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|
926 |
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|
927 # This image has 76 frames |
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928 path = UploadAndGetWadoPath('Multiframe.dcm') |
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|
929 |
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|
930 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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|
931 |
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|
932 frame1 = RenderFrame(path, 1) |
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933 im = UncompressImage(frame1) |
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|
934 self.assertEqual("L", im.mode) |
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935 self.assertEqual(512, im.size[0]) |
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|
936 self.assertEqual(512, im.size[1]) |
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|
937 |
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|
938 im = UncompressImage(RenderFrame(path, 76)) |
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939 self.assertEqual("L", im.mode) |
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940 self.assertEqual(512, im.size[0]) |
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|
941 self.assertEqual(512, im.size[1]) |
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|
942 |
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|
943 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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|
944 |
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|
945 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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946 'Uri' : '%s/rendered' % path |
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|
947 }) |
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|
948 |
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|
949 self.assertEqual(len(frame1), len(defaultFrame)) |
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950 self.assertEqual(frame1, defaultFrame) |
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|
951 |
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|
952 |
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|
953 # This image has 1 frame |
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|
954 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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|
955 |
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|
956 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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957 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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|
958 |
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|
959 frame1 = RenderFrame(path, 1) |
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960 im = UncompressImage(frame1) |
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|
961 self.assertEqual("L", im.mode) |
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962 self.assertEqual(512, im.size[0]) |
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963 self.assertEqual(358, im.size[1]) |
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|
964 |
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|
965 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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966 'Uri' : '%s/rendered' % path |
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|
967 }) |
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|
968 |
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969 self.assertEqual(len(frame1), len(defaultFrame)) |
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970 self.assertEqual(frame1, defaultFrame) |
259
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|
971 |
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|
972 |
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973 def test_qido_parent_attributes(self): |
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974 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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975 study = '2.16.840.1.113669.632.20.1211.10000357775' |
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976 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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977 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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978 |
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979 a = DoGet(ORTHANC, '/dicom-web/studies') |
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980 self.assertEqual(1, len(a)) |
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981 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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982 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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983 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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984 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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985 |
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986 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
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987 self.assertEqual(1, len(a)) |
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988 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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989 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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990 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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991 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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992 |
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993 a = DoGet(ORTHANC, '/dicom-web/series') |
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994 self.assertEqual(1, len(a)) |
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995 self.assertFalse('00080018' in a[0]) |
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996 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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997 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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998 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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999 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1000 |
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1001 a = DoGet(ORTHANC, '/dicom-web/instances') |
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1002 self.assertEqual(1, len(a)) |
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1003 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1004 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1005 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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1006 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1007 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1008 |
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1009 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
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1010 self.assertEqual(1, len(a)) |
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1011 self.assertFalse('00080018' in a[0]) |
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1012 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1013 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1014 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1015 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1016 |
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1017 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
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1018 self.assertEqual(1, len(a)) |
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1019 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1020 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1021 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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1022 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1023 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1024 |
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1025 # "If {StudyInstanceUID} is not specified, all Study-level |
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1026 # attributes specified in Table 6.7.1-2" => Here, |
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1027 # {StudyInstanceUID} *is* specified, so we must *not* get the |
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1028 # PatientName. |
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1029 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
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1030 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
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1031 self.assertEqual(1, len(a)) |
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1032 self.assertFalse('00100010' in a[0]) # PatientName |
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1033 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1034 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1035 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1036 |
487 | 1037 # if we ask explicitely for the Patient and Study tags, we must get it |
1038 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
1039 self.assertEqual(1, len(a)) | |
1040 self.assertTrue('00100010' in a[0]) # PatientName | |
1041 self.assertTrue('00080020' in a[0]) # StudyDate | |
1042 | |
1043 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
1044 a = DoGet(ORTHANC, '/dicom-web/series') | |
1045 self.assertTrue('00100010' in a[0]) # PatientName | |
1046 | |
259
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1047 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
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1048 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
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1049 self.assertEqual(1, len(a)) |
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1050 self.assertFalse('00100010' in a[0]) # PatientName |
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1051 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1052 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1053 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1054 |
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1055 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
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1056 self.assertEqual(1, len(a)) |
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1057 self.assertFalse('00080060' in a[0]) # Modality |
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1058 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1059 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1060 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1061 |
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1062 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
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1063 self.assertEqual(1, len(a)) |
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1064 self.assertFalse('00100010' in a[0]) # PatientName |
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1065 self.assertFalse('00080060' in a[0]) # Modality |
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1066 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1067 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1068 |
487 | 1069 # if we ask explicitely for the Patient and Study tags, we must get it |
1070 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
1071 self.assertEqual(1, len(a)) | |
1072 self.assertTrue('00100010' in a[0]) # PatientName | |
1073 self.assertTrue('00080020' in a[0]) # StudyDate | |
1074 | |
1075 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
1076 a = DoGet(ORTHANC, '/dicom-web/instances') | |
1077 self.assertTrue('00100010' in a[0]) # PatientName | |
1078 self.assertTrue('00080020' in a[0]) # StudyDate | |
1079 self.assertTrue('00080060' in a[0]) # Modality | |
1080 | |
261
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1081 |
270
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1082 #@unittest.skip("Skip this test on GDCM 2.8.4") |
261
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1083 def test_bitbucket_issue_164(self): |
270
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1084 # WARNING - This makes GDCM 2.8.4 crash |
588
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1085 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=164 |
261
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1086 UploadInstance(ORTHANC, 'Issue164.dcm') |
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1087 |
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1088 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
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1089 self.assertEqual(1, len(p)) |
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1090 self.assertEqual(743 * 975 * 3, len(p[0])) |
304 | 1091 |
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1092 metadata = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/metadata') |
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1093 self.assertEqual("YBR_FULL_422", metadata[0]['00280004']['Value'][0]) |
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1094 |
543 | 1095 # TODO |
1096 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
1097 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1): | |
1098 # expectedDcmtkChecksum = '7535a11e7da0fa590c467ac9d323c5c1' | |
1099 # else: | |
1100 expectedDcmtkChecksum = 'b3662c4bfa24a0c73abb08548c63319b' | |
539
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1101 |
304 | 1102 if HasGdcmPlugin(ORTHANC): |
1103 self.assertTrue(ComputeMD5(p[0]) in [ | |
1104 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
539
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1105 expectedDcmtkChecksum # Fallback to DCMTK |
304 | 1106 ]) |
1107 else: | |
539
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1108 self.assertEqual(expectedDcmtkChecksum, ComputeMD5(p[0])) # DCMTK |
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1109 |
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1110 |
271 | 1111 def test_bitbucket_issue_168(self): |
276 | 1112 # "Plugins can't read private tags from the configuration |
1113 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
1114 # 16.04), or if Orthanc <= 1.5.8 | |
588
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1115 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=168 |
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1116 |
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1117 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1118 |
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1119 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1120 self.assertEqual(1, len(a)) |
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1121 self.assertFalse('00090010' in a[0]) |
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1122 self.assertFalse('00091001' in a[0]) |
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1123 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1124 |
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1125 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1126 self.assertEqual(1, len(a)) |
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1127 self.assertFalse('00090010' in a[0]) |
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1128 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
270
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1129 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1130 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1131 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1132 |
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1133 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1134 self.assertEqual(1, len(a)) |
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1135 self.assertTrue('00090010' in a[0]) |
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1136 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1137 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1138 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1139 self.assertTrue('00091001' in a[0]) |
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1140 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1141 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1142 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1143 |
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1144 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1145 self.assertEqual(0, len(a)) |
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1146 |
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1147 |
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1148 def test_rendered_studies_series(self): |
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1149 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1150 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1151 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1152 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1153 |
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1154 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1155 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1156 }) |
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1157 |
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1158 im = UncompressImage(a) |
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1159 self.assertEqual("L", im.mode) |
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1160 self.assertEqual(512, im.size[0]) |
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1161 self.assertEqual(358, im.size[1]) |
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1162 |
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1163 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1164 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1165 }) |
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1166 |
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1167 self.assertEqual(len(a), len(b)) |
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1168 self.assertEqual(a, b) |
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1169 |
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1170 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1171 'Uri' : '/studies/%s/rendered' % study |
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1172 }) |
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1173 |
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1174 self.assertEqual(len(a), len(c)) |
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1175 self.assertEqual(a, c) |
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1176 |
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1177 |
273
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1178 def test_multiple_mime_accept_wado_rs(self): |
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1179 # "Multiple MIME type Accept Headers for Wado-RS" |
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1180 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1181 |
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1182 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1183 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1184 |
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1185 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1186 |
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1187 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1188 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1189 |
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1190 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
274 | 1191 headers = { 'Accept' : 'application/json' }))) |
1192 | |
1193 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1194 headers = { 'Accept' : 'application/dicom+json' }))) | |
1195 | |
1196 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
273
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1197 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1198 |
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1199 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1200 headers = { 'Accept' : 'application/json, tata' }))) |
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1201 |
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1202 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
274 | 1203 headers = { 'Accept' : 'toto' })) |
1204 | |
1205 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
273
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1206 headers = { 'Accept' : 'toto, tata' })) |
275 | 1207 |
1208 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
1209 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1210 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
1211 | |
1212 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1213 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
1214 | |
1215 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1216 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
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1217 |
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1218 |
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1219 |
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1220 def test_bitbucket_issue_56(self): |
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1221 # "Case-insensitive matching over accents" => DICOMweb part |
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1222 # from AlexanderM on 2020-03-20 |
588
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1223 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=56 |
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1224 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1225 |
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1226 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1227 'Level' : 'Patient', |
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1228 'Query' : { |
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1229 'PatientName' : 'Гусева*', |
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1230 }, |
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1231 }))) |
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1232 |
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1233 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1234 'Level' : 'Patient', |
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1235 'Query' : { |
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1236 'PatientName' : 'гусева*', |
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1237 }, |
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1238 }))) |
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1239 |
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1240 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1241 headers = { 'accept' : 'application/json' }))) |
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1242 |
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1243 # This line is the issue |
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1244 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1245 headers = { 'accept' : 'application/json' }))) |
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1246 |
297
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1247 |
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1248 def test_frames_transcoding(self): |
297
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1249 ACCEPT = { |
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1250 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1251 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1252 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1253 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1254 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1255 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1256 } |
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1257 |
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1258 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
539
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1259 truthRGB = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
543 | 1260 |
1261 # TODO | |
1262 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
1263 # with open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.YBR.raw'), 'rb') as f: | |
1264 # truthRawYbr = f.read() | |
539
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1265 |
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1266 # first test: no transcoding since we accept the JPEG transfer syntax |
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1267 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1268 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1269 returnHeaders = True) |
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1270 self.assertEqual(1, len(a)) |
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1271 self.assertEqual(2, len(a[0])) |
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1272 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1273 a[0][1]['Content-Location']) |
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1274 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1275 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1276 self.assertEqual(53476, len(a[0][0])) |
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1277 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1278 |
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1279 # second test: no accept header -> defaults to raw explicit |
297
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1280 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1281 self.assertEqual(1, len(a)) |
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1282 self.assertEqual(480 * 640 * 3, len(a[0])) |
304 | 1283 |
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1284 # Orthanc is now returning the YBR image instead of the RGB |
543 | 1285 # TODO |
1286 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
1287 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1) and not HasGdcmPlugin(ORTHANC): | |
1288 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
1289 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
1290 # else: | |
1291 # http://effbot.org/zone/pil-comparing-images.htm | |
1292 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
1293 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
304 | 1294 |
297
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1295 ACCEPT2 = copy.deepcopy(ACCEPT) |
304 | 1296 if HasGdcmPlugin(ORTHANC): |
297
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1297 IS_GDCM = True |
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1298 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1299 del ACCEPT2['1.2.840.10008.1.2'] |
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1300 else: |
539
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1301 if not IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
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1302 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1303 IS_GDCM = False |
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1304 |
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1305 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1306 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1307 self.assertEqual(1, len(a)) |
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1308 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1309 |
543 | 1310 # TODO |
1311 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
1312 # if IsOrthancVersionAbove(ORTHANC, 1, XX, X) and not HasGdcmPlugin(ORTHANC): | |
1313 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
1314 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
1315 # else: | |
1316 # http://effbot.org/zone/pil-comparing-images.htm | |
1317 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
1318 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
304 | 1319 |
543 | 1320 # TODO: if not IS_GDCM and not IsOrthancVersionAbove(ORTHANC, 1, XX, X): |
1321 if not IS_GDCM: | |
297
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1322 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1323 |
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1324 |
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1325 # Test download using the same transfer syntax |
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1326 RESULTS = { |
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1327 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1328 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1329 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1330 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1331 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1332 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1333 } |
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1334 |
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1335 if IS_GDCM: |
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1336 # This file was failing with GDCM, as it has 2 fragments, |
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1337 # and only the first one was returned => the MD5 below is BAD |
304 | 1338 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
1339 pass | |
1340 | |
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1341 for syntax in ACCEPT2: |
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1342 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1343 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1344 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1345 self.assertEqual(1, len(a)) |
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1346 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1347 |
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1348 # Test transcoding to all the possible transfer syntaxes |
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1349 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
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1350 for syntax in ACCEPT2: |
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1351 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1352 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1353 returnHeaders = True) |
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1354 self.assertEqual(1, len(a)) |
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1355 self.assertEqual(2, len(a[0])) |
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1356 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1357 a[0][1]['Content-Location']) |
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1358 self.assertEqual(ACCEPT[syntax], |
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1359 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1360 if IS_GDCM: |
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1361 self.assertEqual({ |
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1362 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1363 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1364 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1365 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1366 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1367 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1368 } [syntax], ComputeMD5(a[0][0])) |
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1369 else: |
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1370 self.assertEqual({ |
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1371 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1372 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1373 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
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1374 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
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1375 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
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1376 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
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1377 } [syntax], ComputeMD5(a[0][0])) |
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1378 |
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1379 |
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1380 # JPEG image with many fragments for 2 frames |
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1381 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
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1382 |
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1383 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1384 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1385 self.assertEqual(1, len(a)) |
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1386 self.assertEqual(69214, len(a[0])) |
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1387 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
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1388 |
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1389 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
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1390 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1391 self.assertEqual(1, len(b)) |
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1392 self.assertEqual(a[0], b[0]) |
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1393 |
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1394 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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1395 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1396 self.assertEqual(2, len(b)) |
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1397 self.assertEqual(a[0], b[0]) |
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1398 self.assertEqual(a[0], b[1]) |
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1399 |
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1400 |
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1401 def test_wado_transcoding(self): |
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1402 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
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1403 |
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1404 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
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1405 |
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1406 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
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1407 headers = { 'Accept' : 'nope' })) |
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1408 |
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1409 # Up to release 1.5 of the DICOMweb plugin, if no |
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1410 # transfer-syntax was specified, no transcoding occured. This |
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1411 # was because of an undefined behavior up to DICOM |
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1412 # 2016b. Starting with DICOM 2016c, the standard explicitly |
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1413 # states that the image should be transcoded to Little Endian |
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1414 # Explicit. |
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1415 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1416 headers = { }) |
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1417 self.assertEqual(1, len(a)) |
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1418 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1419 self.assertTrue(10 * compressedSize < len(a[0])) |
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1420 uncompressedSize = len(a[0]) |
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1421 |
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1422 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1423 headers = { 'Accept' : 'multipart/related' }) |
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1424 self.assertEqual(1, len(a)) |
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1425 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1426 self.assertEqual(uncompressedSize, len(a[0])) |
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1427 |
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1428 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1429 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1430 self.assertEqual(1, len(a)) |
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1431 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1432 self.assertEqual(uncompressedSize, len(a[0])) |
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1433 |
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1434 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1435 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1436 self.assertEqual(1, len(a)) |
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1437 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1438 self.assertEqual(compressedSize, len(a[0])) |
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1439 |
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1440 # Use source transfer syntax |
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1441 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1442 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1443 self.assertEqual(1, len(a)) |
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1444 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1445 self.assertEqual(compressedSize, len(a[0])) |
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1446 |
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1447 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1448 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1449 self.assertEqual(1, len(a)) |
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1450 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1451 self.assertEqual(uncompressedSize, len(a[0])) |
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1452 |
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1453 # Transcoding |
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1454 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1455 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1456 self.assertEqual(1, len(a)) |
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1457 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1458 self.assertNotEqual(compressedSize, len(a[0])) |
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1459 self.assertNotEqual(uncompressedSize, len(a[0])) |
325
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1460 |
367
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1461 |
325
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1462 def test_compare_wado_uri_and_rs(self): |
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1463 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1464 |
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1465 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1466 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1467 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1468 |
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1469 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1470 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1471 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1472 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1473 |
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1474 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1475 truth = UncompressImage(f.read()) |
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1476 |
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1477 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1478 self.assertEqual('JPEG', im1.format) |
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1479 |
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1480 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1481 self.assertEqual('PNG', im2.format) |
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1482 |
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1483 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
325
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1484 self.assertEqual('JPEG', im3.format) |
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1485 |
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1486 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
325
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1487 headers = { 'Accept' : 'image/png' }) |
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1488 self.assertEqual('PNG', im4.format) |
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1489 |
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1490 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1491 self.assertEqual('JPEG', im5.format) |
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1492 |
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1493 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1494 self.assertEqual('PNG', im6.format) |
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1495 |
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1496 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1497 self.assertEqual('L', im.mode) |
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1498 self.assertEqual(512, im.size[0]) |
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1499 self.assertEqual(512, im.size[1]) |
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1500 |
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1501 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1502 # was redirecting to the "/preview" route of Orthanc |
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1503 # http://effbot.org/zone/pil-comparing-images.htm |
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1504 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1505 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1506 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1507 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
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1508 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1509 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
345 | 1510 |
1511 bbox = ImageChops.difference(im2, truth).getbbox() | |
346 | 1512 if bbox != None: |
1513 # Tolerance of just 1 pixel of difference (needed on Windows) | |
1514 #print(im2.getpixel((238,275))) # => 255 | |
1515 #print(truth.getpixel((238,275))) # => 254 | |
1516 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
1517 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
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1518 |
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1519 |
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1520 def test_issue_195(self): |
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1521 # This fails on Orthanc <= 1.9.2 |
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1522 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=195 |
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1523 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1524 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1525 headers = { 'Accept' : 'application/dicom+json' }) |
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1526 |
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1527 self.assertEqual(1, len(b)) |
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1528 self.assertEqual(5, len(b[0])) |
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1529 |
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1530 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1531 self.assertEqual(2, len(b[0]["00080018"])) |
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1532 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1533 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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1534 b[0]["00080018"]["Value"][0]) |
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1535 |
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1536 self.assertEqual(2, len(b[0]["0020000D"])) |
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1537 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1538 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
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1539 b[0]["0020000D"]["Value"][0]) |
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1540 |
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1541 self.assertEqual(2, len(b[0]["0020000E"])) |
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1542 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1543 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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1544 b[0]["0020000E"]["Value"][0]) |
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1545 |
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1546 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1547 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1548 |
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1549 self.assertEqual(2, len(b[0]["0008103E"])) |
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1550 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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1551 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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1552 |
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|
1553 |
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1554 DoDelete(ORTHANC, 'instances/%s' % a) |
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1555 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
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1556 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
399
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1557 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1558 headers = { 'Accept' : 'application/dicom+json' }) |
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1559 |
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1560 self.assertEqual(1, len(b)) |
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1561 self.assertEqual(5, len(b[0])) |
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1562 |
434
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1563 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
399
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1564 self.assertEqual(2, len(b[0]["00080018"])) |
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1565 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1566 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
399
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1567 b[0]["00080018"]["Value"][0]) |
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1568 |
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1569 self.assertEqual(2, len(b[0]["0020000D"])) |
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1570 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1571 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
399
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1572 b[0]["0020000D"]["Value"][0]) |
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|
1573 |
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1574 self.assertEqual(2, len(b[0]["0020000E"])) |
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1575 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1576 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
399
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1577 b[0]["0020000E"]["Value"][0]) |
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1578 |
434
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1579 self.assertEqual(2, len(b[0]["00084567"])) |
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1580 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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1581 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
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1582 b[0]["00084567"]["BulkDataURI"]) |
399
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1583 |
434
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1584 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
399
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1585 self.assertTrue('Content-Length: 2\r\n' in c) |
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1586 index = c.find('\r\n\r\n') |
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1587 self.assertEqual(0x42, ord(c[index + 4])) |
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1588 self.assertEqual(0x00, ord(c[index + 5])) |
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1589 |
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1590 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
434
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1591 self.assertEqual(1, len(b[0]["00084565"])) |
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1592 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
325
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1593 |
273
afcd550a9216
test_multiple_mime_accept_wado_rs
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1594 |
434
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1595 |
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1596 |
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1597 def test_multiframe_windowing(self): |
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1598 # Fixed in DICOMweb 1.7 |
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1599 def GetLinear(x, c, w): |
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1600 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
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1601 ymin = 0.0 |
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1602 ymax = 255.0 |
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1603 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
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1604 return ymin |
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1605 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
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1606 return ymax |
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1607 else: |
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1608 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
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1609 |
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1610 def GetLinearExact(x, c, w): |
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1611 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
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1612 ymin = 0.0 |
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1613 ymax = 255.0 |
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1614 if float(x) <= float(c) - float(w) / 2.0: |
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1615 return ymin |
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1616 elif float(x) > float(c) + float(w) / 2.0: |
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1617 return ymax |
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1618 else: |
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1619 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
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1620 |
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1621 def GetSigmoid(x, c, w): |
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1622 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
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1623 ymin = 0.0 |
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1624 ymax = 255.0 |
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1625 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
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1626 |
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1627 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
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1628 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
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1629 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
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1630 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
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1631 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
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1632 |
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1633 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
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1634 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
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1635 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
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1636 |
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1637 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
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1638 |
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1639 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
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1640 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
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1641 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
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1642 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
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1643 |
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|
1644 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
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1645 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
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changeset
|
1646 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
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parents:
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changeset
|
1647 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
2c142e070f19
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diff
changeset
|
1648 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
2c142e070f19
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diff
changeset
|
1649 |
2c142e070f19
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diff
changeset
|
1650 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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parents:
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diff
changeset
|
1651 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1652 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1653 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
2c142e070f19
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parents:
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diff
changeset
|
1654 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
2c142e070f19
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diff
changeset
|
1655 |
2c142e070f19
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diff
changeset
|
1656 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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parents:
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diff
changeset
|
1657 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
2c142e070f19
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parents:
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diff
changeset
|
1658 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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diff
changeset
|
1659 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
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diff
changeset
|
1660 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
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changeset
|
1661 |
2c142e070f19
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changeset
|
1662 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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changeset
|
1663 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
2c142e070f19
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diff
changeset
|
1664 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
2c142e070f19
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diff
changeset
|
1665 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
2c142e070f19
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parents:
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diff
changeset
|
1666 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
2c142e070f19
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diff
changeset
|
1667 |
2c142e070f19
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diff
changeset
|
1668 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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diff
changeset
|
1669 ri = 100.0 |
2c142e070f19
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diff
changeset
|
1670 rs = 1.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
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|
1671 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
399
diff
changeset
|
1672 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1673 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1674 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1675 |
2c142e070f19
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diff
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|
1676 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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parents:
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diff
changeset
|
1677 ri = 0.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1678 rs = 2.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1679 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1680 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1681 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
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diff
changeset
|
1682 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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diff
changeset
|
1683 |
2c142e070f19
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|
1684 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
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parents:
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diff
changeset
|
1685 ri = 100.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
399
diff
changeset
|
1686 rs = 2.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1687 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
399
diff
changeset
|
1688 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
399
diff
changeset
|
1689 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1690 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
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parents:
399
diff
changeset
|
1691 |
2c142e070f19
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parents:
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changeset
|
1692 |
532 | 1693 def test_forwarded_headers(self): |
1694 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
1695 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
1696 | |
1697 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
533 | 1698 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) |
532 | 1699 |
1700 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
1701 'host': 'my-domain' | |
1702 }) | |
1703 self.assertIn("http://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
1704 | |
1705 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
1706 'forwarded': 'host=my-domain;proto=https' | |
1707 }) | |
1708 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
1709 | |
1710 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1): | |
1711 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
1712 'X-Forwarded-Host': 'my-domain', | |
1713 'X-Forwarded-Proto': 'https' | |
1714 }) | |
1715 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
1716 | |
1717 | |
575 | 1718 def test_full_mode_cache(self): |
1719 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
1720 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
1721 | |
1722 # wait for the StableSeries to happen to pre-compute the series/metadata | |
1723 time.sleep(4) | |
1724 | |
1725 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
1726 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) | |
1727 | |
1728 | |
551
c8d2775f0d02
added test_issue_216 for DICOMweb
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parents:
549
diff
changeset
|
1729 def test_issue_216(self): |
558
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1730 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1731 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1732 |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1733 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1734 'accept': 'image/webp, */*;q=0.8, text/html, application/xhtml+xml, application/xml;q=0.9' |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1735 }) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1736 self.assertEqual(1, len(m)) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1737 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1738 |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1739 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1740 'accept': 'text/html, application/xhtml+xml, application/xml, image/webp, */*;q=0.8' |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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parents:
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diff
changeset
|
1741 }) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1742 self.assertEqual(1, len(m)) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1743 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) |
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1744 |
561 | 1745 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1) and IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
1746 # This fails on DICOMweb <= 1.13 because of the "; q=.2", | |
1747 # since multiple accepts were not supported | |
588
8aa101e126d0
migration to UCLouvain servers
Sebastien Jodogne <s.jodogne@gmail.com>
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586
diff
changeset
|
1748 # https://orthanc.uclouvain.be/bugs/show_bug.cgi?id=216 |
561 | 1749 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { |
1750 'accept': 'text/html, image/gif, image/jpeg, */*; q=.2, */*; q=.2' | |
1751 }) | |
1752 self.assertEqual(1, len(m)) | |
1753 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
551
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added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1754 |
561 | 1755 # This fails on Orthanc <= 1.12.0 because of the ";q=0.9" |
1756 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyUid, headers = { | |
1757 'accept': 'text/html, application/xhtml+xml, application/xml;q=0.9, image/webp, */*;q=0.8' | |
1758 }) | |
1759 self.assertEqual(1, len(m)) | |
1760 self.assertEqual(studyUid, m[0]['0020000D']['Value'][0]) | |
558
0ad170c7b6c8
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diff
changeset
|
1761 |
0ad170c7b6c8
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diff
changeset
|
1762 |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1763 def test_accept_negotiation(self): |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1764 def CheckBadRequest(uri, accept): |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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|
1765 response = DoGetRaw(ORTHANC, uri, headers = { |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1766 'accept': accept |
552 | 1767 }) |
558
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1768 self.assertEqual(int(response[0]['status']), 400) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1769 |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
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diff
changeset
|
1770 def CheckIsJson(uri, accept): |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1771 if accept != None: |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1772 response = DoGetRaw(ORTHANC, uri, headers = { |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1773 'accept': accept |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1774 }) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1775 else: |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1776 response = DoGetRaw(ORTHANC, uri) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1777 self.assertEqual(int(response[0]['status']), 200) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1778 self.assertEqual(response[0]['content-type'], 'application/dicom+json') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1779 json.loads(response[1]) |
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
549
diff
changeset
|
1780 |
558
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1781 def CheckIsXml(uri, accept): |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1782 response = DoGetMultipart(ORTHANC, uri, headers = { |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1783 'accept': accept |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1784 }, returnHeaders = True) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1785 self.assertEqual(1, len(response)) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1786 self.assertEqual(2, len(response[0])) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1787 self.assertEqual('application/dicom+xml', response[0][1]['Content-Type']) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1788 xml.dom.minidom.parseString(response[0][0]) |
552 | 1789 |
559
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1790 def CheckIsDicom(uri, accept): |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1791 if accept != None: |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1792 response = DoGetMultipart(ORTHANC, uri, headers = { |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1793 'accept': accept |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1794 }, returnHeaders = True) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1795 else: |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1796 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1797 self.assertEqual(1, len(response)) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1798 self.assertEqual(2, len(response[0])) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1799 self.assertEqual('application/dicom', response[0][1]['Content-Type']) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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558
diff
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|
1800 pydicom.dcmread(BytesIO(response[0][0]), force=True) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
558
diff
changeset
|
1801 |
560
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test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1802 def CheckIsBulk(uri, accept): |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1803 if accept != None: |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1804 response = DoGetMultipart(ORTHANC, uri, headers = { |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1805 'accept': accept |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1806 }, returnHeaders = True) |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1807 else: |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1808 response = DoGetMultipart(ORTHANC, uri, returnHeaders = True) |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1809 self.assertEqual(1, len(response)) |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1810 self.assertEqual(2, len(response[0])) |
2db7a9041507
test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
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559
diff
changeset
|
1811 self.assertEqual('application/octet-stream', response[0][1]['Content-Type']) |
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test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1812 self.assertTrue(len(response[0][0]) > 1) |
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test bulk data negotiation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
559
diff
changeset
|
1813 |
558
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1814 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1815 studyUid = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1816 |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1817 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, None) |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1818 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'application/nope') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1819 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/json') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1820 CheckIsJson('/dicom-web/studies/%s/metadata' % studyUid, 'application/dicom+json') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1821 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1822 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1823 CheckIsXml('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/dicom+xml"') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1824 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type="application/nope"') |
0ad170c7b6c8
reactivation of test_issue_216, as the fix is now in the mainline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
555
diff
changeset
|
1825 CheckBadRequest('/dicom-web/studies/%s/metadata' % studyUid, 'multipart/related; type=application/dicom+xml; transfer-syntax=nope') |
551
c8d2775f0d02
added test_issue_216 for DICOMweb
Sebastien Jodogne <s.jodogne@gmail.com>
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549
diff
changeset
|
1826 |
559
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diff
changeset
|
1827 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/nope') |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1828 CheckIsDicom('/dicom-web/studies/%s' % studyUid, None) |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1829 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related') |
87fc87897e7e
test_accept_negotiation for multipart DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1830 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom') |
87fc87897e7e
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diff
changeset
|
1831 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type="application/dicom"') |
87fc87897e7e
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diff
changeset
|
1832 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/nope') |
87fc87897e7e
test_accept_negotiation for multipart DICOM
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diff
changeset
|
1833 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=*') |
87fc87897e7e
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diff
changeset
|
1834 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=*') |
87fc87897e7e
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diff
changeset
|
1835 CheckBadRequest('/dicom-web/studies/%s' % studyUid, 'multipart/related; transfer-syntax=nope') |
87fc87897e7e
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diff
changeset
|
1836 CheckIsDicom('/dicom-web/studies/%s' % studyUid, 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1') |
87fc87897e7e
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diff
changeset
|
1837 |
560
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diff
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|
1838 uri = '/dicom-web/studies/%s/series/%s/instances/%s/bulk/0010,0010' % ( |
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diff
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|
1839 studyUid, '1.3.12.2.1107.5.99.2.1255.30000007020811545343700000012', |
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diff
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|
1840 '1.2.276.0.7230010.3.1.4.2455711835.6056.1170936079.1') |
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diff
changeset
|
1841 CheckIsBulk(uri, None) |
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changeset
|
1842 CheckBadRequest(uri, 'multipart/nope') |
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diff
changeset
|
1843 CheckIsBulk(uri, 'multipart/related') |
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changeset
|
1844 CheckIsBulk(uri, 'multipart/related;type=application/octet-stream') |
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changeset
|
1845 CheckIsBulk(uri, 'multipart/related; type = "application/octet-stream" ') |
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changeset
|
1846 CheckBadRequest(uri, 'multipart/related; type = " application/octet-stream" ') |
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changeset
|
1847 CheckBadRequest(uri, 'multipart/related;type=application/nope') |
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diff
changeset
|
1848 CheckBadRequest(uri, 'multipart/related;range=') |
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diff
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|
1849 |
551
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diff
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|
1850 |
32
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diff
changeset
|
1851 try: |
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changeset
|
1852 print('\nStarting the tests...') |
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diff
changeset
|
1853 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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diff
changeset
|
1854 |
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diff
changeset
|
1855 finally: |
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changeset
|
1856 print('\nDone') |