Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 13:7b69a561f4d3
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 18 Jun 2015 16:22:44 +0200 |
parents | 15c166240dfb |
children | ed9a9fe66002 |
rev | line source |
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3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
3 # Department, University Hospital of Liege, Belgium | |
4 # | |
5 # This program is free software: you can redistribute it and/or | |
6 # modify it under the terms of the GNU General Public License as | |
7 # published by the Free Software Foundation, either version 3 of the | |
8 # License, or (at your option) any later version. | |
9 # | |
10 # This program is distributed in the hope that it will be useful, but | |
11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
13 # General Public License for more details. | |
14 # | |
15 # You should have received a copy of the GNU General Public License | |
16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
17 | |
18 | |
19 import unittest | |
20 | |
11 | 21 from PIL import ImageChops |
3 | 22 from Toolbox import * |
13 | 23 from xml.dom import minidom |
3 | 24 |
25 _LOCAL = None | |
26 _REMOTE = None | |
27 | |
28 | |
29 def SetOrthancParameters(local, remote): | |
30 global _LOCAL, _REMOTE | |
31 _LOCAL = local | |
32 _REMOTE = remote | |
33 | |
34 | |
35 class Orthanc(unittest.TestCase): | |
36 def setUp(self): | |
37 DropOrthanc(_LOCAL) | |
38 DropOrthanc(_REMOTE) | |
39 | |
40 def test_system(self): | |
41 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
42 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
43 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
44 | |
45 def test_upload(self): | |
46 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
47 self.assertEqual('Success', u['Status']) | |
48 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
49 self.assertEqual('AlreadyStored', u['Status']) | |
50 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
51 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
52 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
53 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
54 | |
55 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
56 self.assertEqual('20070101', i['StudyDate']) | |
57 | |
58 | |
5 | 59 def test_upload_2(self): |
3 | 60 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
61 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
62 self.assertEqual(i, instance['ID']) | |
63 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
64 instance['MainDicomTags']['SOPInstanceUID']) | |
65 | |
66 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
67 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
68 series['MainDicomTags']['SeriesInstanceUID']) | |
69 | |
70 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
71 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
72 study['MainDicomTags']['StudyInstanceUID']) | |
73 | |
74 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
75 self.assertEqual('ozp00SjY2xG', | |
76 patient['MainDicomTags']['PatientID']) | |
77 | |
78 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
79 self.assertEqual(2472, len(dicom)) | |
80 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
81 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
82 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
83 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
84 | |
85 | |
5 | 86 def test_images(self): |
87 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
88 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 89 |
5 | 90 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
91 self.assertEqual("L", im.mode) | |
92 self.assertEqual(512, im.size[0]) | |
93 self.assertEqual(358, im.size[1]) | |
94 | |
95 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
96 self.assertEqual("L", im.mode) | |
97 self.assertEqual(512, im.size[0]) | |
98 self.assertEqual(358, im.size[1]) | |
99 | |
100 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
101 self.assertEqual(512, im.size[0]) | |
102 self.assertEqual(358, im.size[1]) | |
103 | |
104 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
105 self.assertEqual("L", im.mode) | |
106 self.assertEqual(512, im.size[0]) | |
107 self.assertEqual(358, im.size[1]) | |
108 | |
109 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
110 self.assertEqual("L", im.mode) | |
111 self.assertEqual(512, im.size[0]) | |
112 self.assertEqual(358, im.size[1]) | |
113 | |
114 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
115 self.assertEqual(512, im.size[0]) | |
116 self.assertEqual(358, im.size[1]) | |
117 | |
6 | 118 |
119 def test_hierarchy(self): | |
120 UploadFolder(_REMOTE, 'Brainix/Epi') | |
121 UploadFolder(_REMOTE, 'Brainix/Flair') | |
122 UploadFolder(_REMOTE, 'Knee/T1') | |
123 UploadFolder(_REMOTE, 'Knee/T2') | |
124 | |
125 p = DoGet(_REMOTE, '/patients') | |
126 s = DoGet(_REMOTE, '/studies') | |
127 t = DoGet(_REMOTE, '/series') | |
128 self.assertEqual(2, len(p)) | |
129 self.assertEqual(2, len(s)) | |
130 self.assertEqual(4, len(t)) | |
131 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
132 | |
133 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
134 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
135 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
136 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
137 | |
138 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
139 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
140 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
141 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
142 | |
143 self.assertTrue(brainixPatient in p) | |
144 self.assertTrue(kneePatient in p) | |
145 self.assertTrue(brainixStudy in s) | |
146 self.assertTrue(kneeStudy in s) | |
147 self.assertTrue(brainixEpi in t) | |
148 self.assertTrue(brainixFlair in t) | |
149 self.assertTrue(kneeT1 in t) | |
150 self.assertTrue(kneeT2 in t) | |
151 | |
152 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
153 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
154 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
155 | |
156 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
157 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
158 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
159 | |
160 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
161 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
162 | |
163 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
164 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
165 | |
166 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
167 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
168 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
169 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
170 | |
171 for patient in p: | |
172 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
173 self.assertEqual(patient, study['ParentPatient']) | |
174 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
175 self.assertEqual(study['ID'], series['ParentStudy']) | |
176 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
177 self.assertEqual(series['ID'], instance['ParentSeries']) | |
178 | |
179 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
180 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
181 | |
182 | |
183 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
184 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
185 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
186 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
187 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
188 self.assertEqual(None, r) | |
189 | |
190 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
191 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
192 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
193 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
194 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
195 self.assertEqual('Study', r['Type']) | |
196 self.assertEqual(kneeStudy, r['ID']) | |
197 | |
198 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
199 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
200 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
201 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
202 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
203 self.assertEqual('Series', r['Type']) | |
204 self.assertEqual(kneeT1, r['ID']) | |
205 | |
206 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
208 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
209 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
210 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
211 self.assertEqual(None, r) | |
212 | |
213 DropOrthanc(_REMOTE) | |
214 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
215 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 216 |
217 | |
218 def test_multi_frame(self): | |
219 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
220 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
221 | |
222 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
223 self.assertEqual("L", im.mode) | |
224 self.assertEqual(512, im.size[0]) | |
225 self.assertEqual(512, im.size[1]) | |
226 | |
227 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
228 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
229 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
231 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
232 | |
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233 |
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234 def test_changes(self): |
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235 # Check emptiness |
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236 c = DoGet(_REMOTE, '/changes') |
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237 self.assertEqual(0, len(c['Changes'])) |
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238 self.assertEqual(0, c['Last']) |
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239 self.assertTrue(c['Done']) |
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240 c = DoGet(_REMOTE, '/changes?last') |
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241 self.assertEqual(0, len(c['Changes'])) |
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242 self.assertEqual(0, c['Last']) |
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243 self.assertTrue(c['Done']) |
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244 |
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245 # Add 1 instance |
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246 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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247 c = DoGet(_REMOTE, '/changes') |
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248 begin = c['Last'] |
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249 self.assertEqual(4, len(c['Changes'])) |
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250 self.assertTrue(c['Done']) |
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251 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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252 |
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253 c = DoGet(_REMOTE, '/changes?last') |
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254 self.assertEqual(1, len(c['Changes'])) |
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255 self.assertEqual(begin, c['Last']) |
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256 self.assertTrue(c['Done']) |
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257 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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258 self.assertEqual(1, len(c['Changes'])) |
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259 self.assertEqual(begin, c['Last']) |
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260 self.assertTrue(c['Done']) |
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261 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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262 self.assertEqual(1, len(c['Changes'])) |
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263 self.assertEqual(begin - 1, c['Last']) |
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264 self.assertFalse(c['Done']) |
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265 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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266 self.assertEqual(1, len(c['Changes'])) |
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267 self.assertEqual(begin - 2, c['Last']) |
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268 self.assertFalse(c['Done']) |
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269 |
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270 UploadFolder(_REMOTE, 'Knee/T1') |
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271 UploadFolder(_REMOTE, 'Knee/T2') |
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272 since = begin |
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273 countPatients = 0 |
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274 countStudies = 0 |
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275 countSeries = 0 |
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276 countInstances = 0 |
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277 completed = 0 |
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278 while True: |
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279 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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280 since = c['Last'] |
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281 for i in c['Changes']: |
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282 if i['ResourceType'] == 'Instance': |
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283 countInstances += 1 |
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284 if i['ResourceType'] == 'Patient': |
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285 countPatients += 1 |
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286 if i['ResourceType'] == 'Study': |
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287 countStudies += 1 |
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288 if i['ResourceType'] == 'Series': |
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289 countSeries += 1 |
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290 if i['ChangeType'] == 'NewInstance': |
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291 countInstances += 1 |
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292 if i['ChangeType'] == 'NewPatient': |
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293 countPatients += 1 |
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294 if i['ChangeType'] == 'NewStudy': |
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295 countStudies += 1 |
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296 if i['ChangeType'] == 'NewSeries': |
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297 countSeries += 1 |
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298 if i['ChangeType'] == 'CompletedSeries': |
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299 completed += 1 |
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300 self.assertTrue('ID' in i) |
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301 self.assertTrue('Path' in i) |
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302 self.assertTrue('Seq' in i) |
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303 if c['Done']: |
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304 break |
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305 |
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306 self.assertEqual(2 * 50, countInstances) |
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307 self.assertEqual(2 * 1, countPatients) |
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308 self.assertEqual(2 * 1, countStudies) |
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309 self.assertEqual(2 * 2, countSeries) |
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310 self.assertEqual(0, completed) |
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311 |
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312 |
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313 def test_archive(self): |
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314 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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315 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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316 |
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317 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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318 self.assertEqual(2, len(z.namelist())) |
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319 |
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320 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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321 self.assertEqual(2, len(z.namelist())) |
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322 |
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323 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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324 self.assertEqual(1, len(z.namelist())) |
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325 |
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326 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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327 |
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328 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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329 self.assertEqual(2, len(z.namelist())) |
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330 |
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331 |
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332 def test_media_archive(self): |
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333 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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334 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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335 |
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336 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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337 self.assertEqual(3, len(z.namelist())) |
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338 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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339 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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340 self.assertTrue('DICOMDIR' in z.namelist()) |
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341 |
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342 try: |
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343 os.remove('/tmp/DICOMDIR') |
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344 except: |
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345 # The file does not exist |
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346 pass |
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347 |
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348 z.extract('DICOMDIR', '/tmp') |
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349 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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350 stderr = subprocess.STDOUT).split('\n') |
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351 self.assertEqual(3, len(a)) |
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352 self.assertTrue(a[0].startswith('Warning')) |
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353 self.assertEqual('BasicDirectory', a[1]) |
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354 self.assertEqual('', a[2]) |
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355 |
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356 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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357 stderr = subprocess.STDOUT).split('\n') |
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358 self.assertEqual(1, len(a)) |
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359 self.assertEqual('', a[0]) |
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360 |
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361 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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362 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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363 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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364 |
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365 os.remove('/tmp/DICOMDIR') |
10 | 366 |
367 | |
368 def test_protection(self): | |
369 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
370 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
371 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
372 a = DoGet(_REMOTE, '/patients')[0] | |
373 b = DoGet(_REMOTE, '/patients')[1] | |
374 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
375 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
376 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
377 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
378 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
379 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
380 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
381 | |
382 | |
12 | 383 def test_raw_tags(self): |
10 | 384 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
385 | |
386 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
387 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
388 | |
389 s = '/instances/%s/content/' % i | |
390 | |
391 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
392 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
393 | |
394 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
395 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
396 | |
397 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
398 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
399 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
400 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
401 | |
402 for i in DoGet(_REMOTE, '/instances'): | |
403 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
404 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
405 | |
406 | |
407 def test_raw_tags_mdn(self): | |
408 # Bug reported by Cyril Paulus | |
409 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
410 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
411 | |
412 | |
413 def test_modify_instance(self): | |
414 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
415 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
416 json.dumps({ | |
417 "Replace" : { | |
418 "PatientName" : "hello", | |
419 #"PatientID" : "world" | |
420 }, | |
421 "Remove" : [ "StationName" ], | |
422 "RemovePrivateTags" : None | |
423 }), | |
424 'application/json') | |
425 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
426 | |
427 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
428 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
429 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
430 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
431 | |
432 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
433 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
434 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
436 | |
437 | |
438 def test_modify_series(self): | |
439 # Upload 4 images from the same series | |
440 for i in range(4): | |
441 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
442 | |
443 origSeries = DoGet(_REMOTE, '/series')[0] | |
444 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
445 '{"Replace":{"PatientName":"Jodogne"}}', | |
446 'application/json')['ID'] | |
447 | |
448 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
449 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
450 self.assertEqual(4, len(instances)) | |
451 for i in instances: | |
452 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
453 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
454 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
455 | |
456 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
457 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
458 | |
459 | |
460 def test_modify_study(self): | |
461 # Upload 4 images from the 2 series of the same study | |
462 for i in range(4): | |
463 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
464 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
465 | |
466 origStudy = DoGet(_REMOTE, '/studies')[0] | |
467 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
468 '{"Replace":{"PatientName":"Jodogne"}}', | |
469 'application/json')['ID'] | |
470 | |
471 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
472 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
473 self.assertEqual(2, len(series)) | |
474 for s in series: | |
475 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
476 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
477 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
478 | |
479 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
480 for i in instances: | |
481 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
482 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
483 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
484 | |
485 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
486 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
487 | |
488 | |
489 def test_anonymize_series(self): | |
490 # Upload 4 images from the same series | |
491 for i in range(4): | |
492 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
493 | |
494 origSeries = DoGet(_REMOTE, '/series')[0] | |
495 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
496 '{}', | |
497 'application/json')['ID'] | |
498 | |
499 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
500 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
501 self.assertEqual(4, len(instances)) | |
502 for i in instances: | |
503 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
504 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
505 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
506 | |
507 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
508 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
509 | |
510 | |
511 def test_anonymize_study(self): | |
512 # Upload 4 images from the 2 series of the same study | |
513 for i in range(4): | |
514 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
515 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
516 | |
517 origStudy = DoGet(_REMOTE, '/studies')[0] | |
518 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
519 '{"Replace":{"PatientName":"Jodogne"}}', | |
520 'application/json')['ID'] | |
521 | |
522 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
523 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
524 self.assertEqual(2, len(series)) | |
525 for s in series: | |
526 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
527 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
528 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
529 | |
530 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
531 for i in instances: | |
532 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
533 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
534 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
535 | |
536 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
537 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 538 |
539 | |
540 | |
541 def test_storescu(self): | |
542 # Check emptiness | |
543 e = DoGet(_REMOTE, '/exports') | |
544 self.assertEqual(0, len(e['Exports'])) | |
545 self.assertEqual(0, e['Last']) | |
546 self.assertTrue(e['Done']) | |
547 e = DoGet(_REMOTE, '/exports?last') | |
548 self.assertEqual(0, len(e['Exports'])) | |
549 self.assertEqual(0, e['Last']) | |
550 self.assertTrue(e['Done']) | |
551 | |
552 # Add 1 instance | |
553 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
554 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
555 | |
556 # Export the instance | |
557 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
558 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
559 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
560 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
561 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
562 | |
563 e = DoGet(_REMOTE, '/exports') | |
564 self.assertEqual(1, len(e['Exports'])) | |
565 self.assertTrue(e['Done']) | |
566 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
567 e = DoGet(_REMOTE, '/exports?limit=1') | |
568 self.assertEqual(1, len(e['Exports'])) | |
569 self.assertTrue(e['Done']) | |
570 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
571 e = DoGet(_REMOTE, '/exports?last') | |
572 self.assertEqual(1, len(e['Exports'])) | |
573 self.assertTrue(e['Done']) | |
574 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
575 seqInstance = e['Last'] | |
576 | |
577 # Export the series | |
578 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
579 | |
580 e = DoGet(_REMOTE, '/exports') | |
581 self.assertEqual(2, len(e['Exports'])) | |
582 self.assertTrue(e['Done']) | |
583 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
584 seqSeries = e['Last'] | |
585 self.assertNotEqual(seqInstance, seqSeries) | |
586 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
587 self.assertEqual(1, len(e['Exports'])) | |
588 self.assertFalse(e['Done']) | |
589 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
590 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
591 self.assertEqual(1, len(e['Exports'])) | |
592 self.assertTrue(e['Done']) | |
593 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
594 e = DoGet(_REMOTE, '/exports?last') | |
595 self.assertEqual(1, len(e['Exports'])) | |
596 self.assertTrue(e['Done']) | |
597 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
598 | |
599 # Export the study | |
600 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
601 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
602 | |
603 # Export the patient | |
604 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
605 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
606 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
607 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
608 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
609 | |
610 e = DoGet(_REMOTE, '/exports') | |
611 self.assertEqual(4, len(e['Exports'])) | |
612 self.assertTrue(e['Done']) | |
613 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
614 seqPatient = e['Last'] | |
615 self.assertNotEqual(seqInstance, seqSeries) | |
616 self.assertNotEqual(seqSeries, seqStudy) | |
617 self.assertNotEqual(seqStudy, seqPatient) | |
618 self.assertTrue(seqInstance < seqSeries) | |
619 self.assertTrue(seqSeries < seqStudy) | |
620 self.assertTrue(seqStudy < seqPatient) | |
621 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
622 self.assertEqual(1, len(e['Exports'])) | |
623 self.assertFalse(e['Done']) | |
624 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
625 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
626 self.assertEqual(1, len(e['Exports'])) | |
627 self.assertFalse(e['Done']) | |
628 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
629 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
630 self.assertEqual(1, len(e['Exports'])) | |
631 self.assertFalse(e['Done']) | |
632 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
633 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
634 self.assertEqual(1, len(e['Exports'])) | |
635 self.assertTrue(e['Done']) | |
636 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
637 e = DoGet(_REMOTE, '/exports?last') | |
638 self.assertEqual(1, len(e['Exports'])) | |
639 self.assertTrue(e['Done']) | |
640 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
641 | |
642 | |
643 # Check the content of the logged information | |
644 e = DoGet(_REMOTE, '/exports')['Exports'] | |
645 | |
646 if 'PatientID' in e[0]: | |
647 # Since Orthanc 0.8.6 | |
648 patient = 'PatientID' | |
649 study = 'StudyInstanceUID' | |
650 series = 'SeriesInstanceUID' | |
651 instance = 'SOPInstanceUID' | |
652 else: | |
653 # Up to Orthanc 0.8.5 | |
654 patient = 'PatientId' | |
655 study = 'StudyInstanceUid' | |
656 series = 'SeriesInstanceUid' | |
657 instance = 'SopInstanceUid' | |
658 | |
659 for k in range(4): | |
660 self.assertTrue('Date' in e[k]) | |
661 self.assertTrue('Seq' in e[k]) | |
662 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
663 | |
664 self.assertEqual(10, len(e[0])) | |
665 self.assertEqual('Instance', e[0]['ResourceType']) | |
666 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
667 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
668 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
669 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
670 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
671 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
672 | |
673 self.assertEqual(9, len(e[1])) | |
674 self.assertEqual('Series', e[1]['ResourceType']) | |
675 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
676 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
677 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
678 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
679 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
680 | |
681 self.assertEqual(8, len(e[2])) | |
682 self.assertEqual('Study', e[2]['ResourceType']) | |
683 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
684 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
685 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
686 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
687 | |
688 self.assertEqual(7, len(e[3])) | |
689 self.assertEqual('Patient', e[3]['ResourceType']) | |
690 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
691 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
692 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
693 | |
694 DropOrthanc(_REMOTE) | |
695 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
696 | |
697 | |
698 def test_store_peer(self): | |
699 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
700 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
701 | |
702 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
703 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
704 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
705 | |
706 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
707 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
708 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
709 | |
710 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
711 | |
712 DropOrthanc(_REMOTE) | |
713 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
714 | |
715 | |
716 def test_bulk_storescu(self): | |
717 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
718 | |
719 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
720 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
721 | |
722 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
723 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
724 | |
725 DropOrthanc(_LOCAL) | |
726 | |
727 # Send using patient's UUID | |
728 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
729 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
730 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
731 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
732 | |
733 | |
734 def test_color(self): | |
735 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
736 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
737 self.assertEqual("RGB", im.mode) | |
738 self.assertEqual(41, im.size[0]) | |
739 self.assertEqual(41, im.size[1]) | |
740 | |
741 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 742 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 743 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
744 | |
745 | |
12 | 746 def test_faking_ruby_put(self): |
747 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
748 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
749 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
750 a = DoGet(_REMOTE, '/patients')[0] | |
751 b = DoGet(_REMOTE, '/patients')[1] | |
752 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
753 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
754 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
755 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
756 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
757 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
758 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
759 | |
760 | |
761 def test_faking_ruby_delete(self): | |
762 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
763 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
764 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
765 a = DoGet(_REMOTE, '/patients')[0] | |
766 b = DoGet(_REMOTE, '/patients')[1] | |
767 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
768 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
769 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
770 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
771 | |
772 | |
773 def test_faking_google_put(self): | |
774 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
775 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
776 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
777 a = DoGet(_REMOTE, '/patients')[0] | |
778 b = DoGet(_REMOTE, '/patients')[1] | |
779 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
780 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
781 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
782 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
783 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
784 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
785 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
786 | |
787 | |
788 def test_faking_google_delete(self): | |
789 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
790 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
791 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
792 a = DoGet(_REMOTE, '/patients')[0] | |
793 b = DoGet(_REMOTE, '/patients')[1] | |
794 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
795 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
796 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
797 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
798 | |
799 | |
800 def test_lua(self): | |
801 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
802 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
803 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
804 | |
805 | |
806 def test_metadata(self): | |
807 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
808 p = DoGet(_REMOTE, '/patients')[0] | |
809 i = DoGet(_REMOTE, '/instances')[0] | |
810 | |
811 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
812 self.assertEqual(1, len(m)) | |
813 self.assertEqual('LastUpdate', m[0]) | |
814 | |
815 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
816 self.assertEqual(3, len(m)) | |
817 self.assertTrue('IndexInSeries' in m) | |
818 self.assertTrue('ReceptionDate' in m) | |
819 self.assertTrue('RemoteAET' in m) | |
820 | |
821 # Play with custom metadata | |
822 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
823 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
824 self.assertEqual(2, len(m)) | |
825 self.assertTrue('LastUpdate' in m) | |
826 self.assertTrue('5555' in m) | |
827 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
828 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
829 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
830 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
831 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
832 self.assertEqual(1, len(m)) | |
833 self.assertTrue('LastUpdate' in m) | |
13 | 834 |
835 | |
836 def test_statistics(self): | |
837 # Upload 16 instances | |
838 for i in range(4): | |
839 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
840 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
842 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
843 | |
844 s = DoGet(_REMOTE, '/statistics') | |
845 self.assertEqual(16, s['CountInstances']) | |
846 self.assertEqual(2, s['CountPatients']) | |
847 self.assertEqual(2, s['CountStudies']) | |
848 self.assertEqual(4, s['CountSeries']) | |
849 d = int(s['TotalUncompressedSize']) | |
850 | |
851 e = 0 | |
852 for patient in DoGet(_REMOTE, '/patients'): | |
853 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
854 self.assertEqual(8, s['CountInstances']) | |
855 self.assertEqual(1, s['CountStudies']) | |
856 self.assertEqual(2, s['CountSeries']) | |
857 e += int(s['UncompressedSize']) | |
858 | |
859 for study in DoGet(_REMOTE, '/studies'): | |
860 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
861 self.assertEqual(8, s['CountInstances']) | |
862 self.assertEqual(2, s['CountSeries']) | |
863 e += int(s['UncompressedSize']) | |
864 | |
865 for series in DoGet(_REMOTE, '/series'): | |
866 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
867 self.assertEqual(4, s['CountInstances']) | |
868 e += int(s['UncompressedSize']) | |
869 | |
870 self.assertEqual(3 * d, e) | |
871 | |
872 | |
873 def test_custom_attachment(self): | |
874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
875 patient = DoGet(_REMOTE, '/patients')[0] | |
876 instance = DoGet(_REMOTE, '/instances')[0] | |
877 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
878 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
879 | |
880 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
881 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
882 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
883 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
884 | |
885 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
886 hello = 'hellohellohellohellohellohellohellohellohello' | |
887 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
888 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
889 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
890 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
891 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
892 | |
893 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
894 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
895 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
896 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
897 size + | |
898 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
899 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
900 | |
901 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
902 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
903 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
904 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
905 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
906 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
907 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
908 | |
909 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
910 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
911 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
912 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
913 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
914 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
915 | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
917 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
918 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
919 | |
920 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
921 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
922 | |
923 | |
924 def test_incoming_storescu(self): | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
926 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
927 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
929 | |
930 | |
931 def test_incoming_findscu(self): | |
932 def CallFindScu(args): | |
933 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
934 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
935 stderr=subprocess.PIPE) | |
936 return p.communicate()[1] | |
937 | |
938 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
939 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
940 | |
941 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
942 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
943 self.assertEqual(2, len(patientNames)) | |
944 self.assertTrue('Test Patient BG ' in patientNames) | |
945 self.assertTrue('Anonymized' in patientNames) | |
946 | |
947 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
948 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
949 self.assertEqual(2, len(series)) | |
950 self.assertTrue('20070208' in series) | |
951 self.assertTrue('19980312' in series) | |
952 | |
953 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
954 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
955 self.assertEqual(1, len(series)) | |
956 | |
957 # Test the "CaseSentitivePN" flag (false by default) | |
958 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
959 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
960 self.assertEqual(1, len(series)) | |
961 | |
962 | |
963 @unittest.skip("This test fails, to fix") | |
964 def test_incoming_movescu(self): | |
965 def CallMoveScu(args): | |
966 subprocess.check_call([ 'movescu', | |
967 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
968 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
969 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
970 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
971 stderr=subprocess.PIPE) | |
972 | |
973 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
974 | |
975 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
976 #CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) | |
977 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
978 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
979 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
980 | |
981 | |
982 def test_findscu(self): | |
983 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
984 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
985 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
986 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
987 | |
988 # Test the "find-patient" level | |
989 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
990 self.assertEqual(1, len(p)) | |
991 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
992 | |
993 # Test wildcards constraints. The "LO" value representation | |
994 # for PatientID is always case-sensitive, but the "PN" for | |
995 # PatientName might depend on the implementation: | |
996 # "GenerateConfigurationForTests.py" will force it to be case | |
997 # insensitive (which was the default until Orthanc 0.8.6). | |
998 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
999 self.assertEqual(1, len(p)) | |
1000 | |
1001 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1002 self.assertEqual(1, len(p)) | |
1003 | |
1004 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1005 self.assertEqual(1, len(p)) | |
1006 | |
1007 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1008 self.assertEqual(1, len(p)) | |
1009 | |
1010 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1011 self.assertEqual(0, len(p)) | |
1012 | |
1013 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1014 self.assertEqual(0, len(p)) | |
1015 | |
1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1017 self.assertEqual(0, len(p)) | |
1018 | |
1019 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1020 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1021 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1022 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1023 | |
1024 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1025 self.assertEqual(2, len(p)) | |
1026 | |
1027 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1028 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1029 self.assertEqual(1, len(s)) | |
1030 self.assertEqual('20070208', s[0]['StudyDate']) | |
1031 | |
1032 # Test range searches | |
1033 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1034 'StudyDate' : '-20070101' }) | |
1035 self.assertEqual(0, len(t)) | |
1036 | |
1037 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1038 'StudyDate' : '20090101-' }) | |
1039 self.assertEqual(0, len(t)) | |
1040 | |
1041 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1042 'StudyDate' : '20070101-' }) | |
1043 self.assertEqual(1, len(t)) | |
1044 | |
1045 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1046 'StudyDate' : '-20090101' }) | |
1047 self.assertEqual(1, len(t)) | |
1048 | |
1049 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1050 'StudyDate' : '20070207-20070207' }) | |
1051 self.assertEqual(0, len(t)) | |
1052 | |
1053 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1054 'StudyDate' : '20070208-20070208' }) | |
1055 self.assertEqual(1, len(t)) | |
1056 | |
1057 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1058 'StudyDate' : '20070209-20070209' }) | |
1059 self.assertEqual(0, len(t)) | |
1060 | |
1061 # Test the ModalitiesInStudy tag | |
1062 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1063 'PatientID' : 'B9uTHKOZ', | |
1064 'ModalitiesInStudy' : 'US' }) | |
1065 self.assertEqual(0, len(t)) | |
1066 | |
1067 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1068 'PatientID' : 'B9uTHKOZ', | |
1069 'ModalitiesInStudy' : 'CT' }) | |
1070 self.assertEqual(1, len(t)) | |
1071 | |
1072 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1073 'PatientID' : 'B9uTHKOZ', | |
1074 'ModalitiesInStudy' : 'US\\CT' }) | |
1075 self.assertEqual(1, len(t)) | |
1076 | |
1077 # Test the "find-series" level | |
1078 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1079 'PatientID' : 'B9uTHKOZ', | |
1080 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1081 self.assertEqual(1, len(t)) | |
1082 | |
1083 # Test "\" separator | |
1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1085 'PatientID' : 'B9uTHKOZ', | |
1086 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1087 'Modality' : 'MR\\CT\\US' }) | |
1088 self.assertEqual(1, len(t)) | |
1089 | |
1090 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1091 'PatientID' : 'B9uTHKOZ', | |
1092 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1093 'Modality' : 'MR\\US' }) | |
1094 self.assertEqual(0, len(t)) | |
1095 | |
1096 | |
1097 def test_update_modalities(self): | |
1098 try: | |
1099 DoDelete(_REMOTE, '/modalities/toto') | |
1100 except: | |
1101 pass | |
1102 try: | |
1103 DoDelete(_REMOTE, '/modalities/tata') | |
1104 except: | |
1105 pass | |
1106 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1107 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1108 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1109 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1110 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1111 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1112 DoDelete(_REMOTE, '/modalities/toto') | |
1113 DoDelete(_REMOTE, '/modalities/tata') | |
1114 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1115 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1116 | |
1117 | |
1118 def test_update_peers(self): | |
1119 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1120 try: | |
1121 DoDelete(_REMOTE, '/peers/toto') | |
1122 except: | |
1123 pass | |
1124 try: | |
1125 DoDelete(_REMOTE, '/peers/tata') | |
1126 except: | |
1127 pass | |
1128 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1129 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1130 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1131 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1132 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1133 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1134 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1135 DoDelete(_REMOTE, '/peers/toto') | |
1136 DoDelete(_REMOTE, '/peers/tata') | |
1137 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1138 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1139 | |
1140 | |
1141 def test_mesterhazy_modification(self): | |
1142 # When I modify a series ( eg. curl | |
1143 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1144 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1145 # series is added to a new Study, instead of the existing | |
1146 # Study. Fixed in Orthanc 0.7.5 | |
1147 | |
1148 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1149 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1150 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1151 | |
1152 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1153 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1154 | |
1155 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1156 | |
1157 | |
1158 def test_create(self): | |
1159 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1160 json.dumps({ | |
1161 'PatientName' : 'Jodogne', | |
1162 'Modality' : 'CT', | |
1163 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
1164 })) | |
1165 | |
1166 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1167 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1168 | |
1169 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1170 self.assertEqual((5, 5), png.size) | |
1171 | |
1172 | |
1173 def test_pilates(self): | |
1174 # "SCU failed error when accessing orthanc with osirix" by | |
1175 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1176 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1177 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1178 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1179 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1180 | |
1181 | |
1182 def test_shared_tags(self): | |
1183 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1184 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1185 p = DoGet(_REMOTE, '/patients')[0] | |
1186 | |
1187 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1188 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1189 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1190 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1191 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1192 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1193 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1194 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1195 | |
1196 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1197 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1198 | |
1199 | |
1200 def test_modules(self): | |
1201 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1202 p = DoGet(_REMOTE, '/patients')[0] | |
1203 s = DoGet(_REMOTE, '/studies')[0] | |
1204 t = DoGet(_REMOTE, '/series')[0] | |
1205 | |
1206 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1207 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1208 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1209 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1210 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1211 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1212 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1213 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1214 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1215 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1216 | |
1217 | |
1218 def test_auto_directory(self): | |
1219 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1220 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1221 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1222 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1223 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1224 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1225 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1226 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1227 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1228 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1229 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1230 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1231 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1232 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
1234 | |
1235 | |
1236 def test_echo(self): | |
1237 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1238 | |
1239 | |
1240 def test_xml(self): | |
1241 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1242 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1243 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1244 self.assertEqual(len(items), len(json)) | |
1245 | |
1246 self.assertTrue('dicom-conformance' in json) | |
1247 | |
1248 ok = False | |
1249 for i in items: | |
1250 if i.childNodes[0].data == 'dicom-conformance': | |
1251 ok = True | |
1252 self.assertTrue(ok) | |
1253 | |
1254 | |
1255 def test_issue_16(self): | |
1256 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
1257 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1258 self.assertEqual('0018,1063', t) | |
1259 | |
1260 | |
1261 def test_issue_22(self): | |
1262 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1263 a = [ | |
1264 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1265 "c69eee9a51eea3e8611e82e578897254", | |
1266 "315666be83e2d0111c77bc0996d84901", | |
1267 "3e27aa959d911172c48a1436443c72b1", | |
1268 "958642c9e7e9d232d3869faff546058c", | |
1269 "5e7ea8e3e4230cae707d143481355c59", | |
1270 "eda37f83558d858a596175aed8b2ad47", | |
1271 "486713bd2895c4ecbe0e97715ac7f80a", | |
1272 "091ef729eb169e67da8a0faa9631f9a8", | |
1273 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1274 "e2f39e85896fe58876654b94cd0b5013", | |
1275 "6fd2129e4950abbe1be053bc814d5da8", | |
1276 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1277 "746f808582156734dd6b6fdfd3a0b72c", | |
1278 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1279 "806b8b3e300c615099c11a5ec23465aa", | |
1280 "7c836aa298ba6eef96434579af631a11", | |
1281 "a0357dc9f4f72d73a885c33d7c287446", | |
1282 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1283 "8b114c526b8cbed6cad8a3248b7b480c", | |
1284 "44e6670f127e612a2b4aa60a0d207698", | |
1285 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1286 "95c796c2fa8f59018b15cf2987b1f79b", | |
1287 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1288 ] | |
1289 | |
1290 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1291 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1292 | |
1293 for i in range(len(a)): | |
1294 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1295 | |
1296 | |
1297 def test_issue_19(self): | |
1298 # This is an image with "YBR_FULL" photometric interpretation | |
1299 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm | |
1300 | |
1301 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
1302 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview') | |
1303 | |
1304 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png | |
1305 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i)) | |
1306 | |
1307 | |
1308 def test_issue_37(self): | |
1309 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
1310 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1311 | |
1312 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1313 'CaseSensitive' : True, | |
1314 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1315 self.assertEqual(1, len(a)) |