Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 13:7b69a561f4d3
cont
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 18 Jun 2015 16:22:44 +0200 |
| parents | 15c166240dfb |
| children | ed9a9fe66002 |
| rev | line source |
|---|---|
| 3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
| 2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 3 # Department, University Hospital of Liege, Belgium | |
| 4 # | |
| 5 # This program is free software: you can redistribute it and/or | |
| 6 # modify it under the terms of the GNU General Public License as | |
| 7 # published by the Free Software Foundation, either version 3 of the | |
| 8 # License, or (at your option) any later version. | |
| 9 # | |
| 10 # This program is distributed in the hope that it will be useful, but | |
| 11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 # General Public License for more details. | |
| 14 # | |
| 15 # You should have received a copy of the GNU General Public License | |
| 16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 | |
| 18 | |
| 19 import unittest | |
| 20 | |
| 11 | 21 from PIL import ImageChops |
| 3 | 22 from Toolbox import * |
| 13 | 23 from xml.dom import minidom |
| 3 | 24 |
| 25 _LOCAL = None | |
| 26 _REMOTE = None | |
| 27 | |
| 28 | |
| 29 def SetOrthancParameters(local, remote): | |
| 30 global _LOCAL, _REMOTE | |
| 31 _LOCAL = local | |
| 32 _REMOTE = remote | |
| 33 | |
| 34 | |
| 35 class Orthanc(unittest.TestCase): | |
| 36 def setUp(self): | |
| 37 DropOrthanc(_LOCAL) | |
| 38 DropOrthanc(_REMOTE) | |
| 39 | |
| 40 def test_system(self): | |
| 41 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 42 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 43 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 44 | |
| 45 def test_upload(self): | |
| 46 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 47 self.assertEqual('Success', u['Status']) | |
| 48 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 49 self.assertEqual('AlreadyStored', u['Status']) | |
| 50 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 51 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 52 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 53 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 54 | |
| 55 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 56 self.assertEqual('20070101', i['StudyDate']) | |
| 57 | |
| 58 | |
| 5 | 59 def test_upload_2(self): |
| 3 | 60 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 61 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 62 self.assertEqual(i, instance['ID']) | |
| 63 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 64 instance['MainDicomTags']['SOPInstanceUID']) | |
| 65 | |
| 66 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 67 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 68 series['MainDicomTags']['SeriesInstanceUID']) | |
| 69 | |
| 70 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 71 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 72 study['MainDicomTags']['StudyInstanceUID']) | |
| 73 | |
| 74 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 75 self.assertEqual('ozp00SjY2xG', | |
| 76 patient['MainDicomTags']['PatientID']) | |
| 77 | |
| 78 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 79 self.assertEqual(2472, len(dicom)) | |
| 80 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 81 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 82 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 83 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 84 | |
| 85 | |
| 5 | 86 def test_images(self): |
| 87 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 88 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 89 |
| 5 | 90 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 91 self.assertEqual("L", im.mode) | |
| 92 self.assertEqual(512, im.size[0]) | |
| 93 self.assertEqual(358, im.size[1]) | |
| 94 | |
| 95 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 96 self.assertEqual("L", im.mode) | |
| 97 self.assertEqual(512, im.size[0]) | |
| 98 self.assertEqual(358, im.size[1]) | |
| 99 | |
| 100 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 101 self.assertEqual(512, im.size[0]) | |
| 102 self.assertEqual(358, im.size[1]) | |
| 103 | |
| 104 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 105 self.assertEqual("L", im.mode) | |
| 106 self.assertEqual(512, im.size[0]) | |
| 107 self.assertEqual(358, im.size[1]) | |
| 108 | |
| 109 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 110 self.assertEqual("L", im.mode) | |
| 111 self.assertEqual(512, im.size[0]) | |
| 112 self.assertEqual(358, im.size[1]) | |
| 113 | |
| 114 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 115 self.assertEqual(512, im.size[0]) | |
| 116 self.assertEqual(358, im.size[1]) | |
| 117 | |
| 6 | 118 |
| 119 def test_hierarchy(self): | |
| 120 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 121 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 122 UploadFolder(_REMOTE, 'Knee/T1') | |
| 123 UploadFolder(_REMOTE, 'Knee/T2') | |
| 124 | |
| 125 p = DoGet(_REMOTE, '/patients') | |
| 126 s = DoGet(_REMOTE, '/studies') | |
| 127 t = DoGet(_REMOTE, '/series') | |
| 128 self.assertEqual(2, len(p)) | |
| 129 self.assertEqual(2, len(s)) | |
| 130 self.assertEqual(4, len(t)) | |
| 131 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 132 | |
| 133 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 134 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 135 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 136 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 137 | |
| 138 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 139 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 140 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 141 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 142 | |
| 143 self.assertTrue(brainixPatient in p) | |
| 144 self.assertTrue(kneePatient in p) | |
| 145 self.assertTrue(brainixStudy in s) | |
| 146 self.assertTrue(kneeStudy in s) | |
| 147 self.assertTrue(brainixEpi in t) | |
| 148 self.assertTrue(brainixFlair in t) | |
| 149 self.assertTrue(kneeT1 in t) | |
| 150 self.assertTrue(kneeT2 in t) | |
| 151 | |
| 152 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 153 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 154 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 155 | |
| 156 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 157 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 158 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 159 | |
| 160 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 161 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 162 | |
| 163 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 164 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 165 | |
| 166 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 167 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 168 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 169 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 170 | |
| 171 for patient in p: | |
| 172 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 173 self.assertEqual(patient, study['ParentPatient']) | |
| 174 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 175 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 176 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 177 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 178 | |
| 179 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 180 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 181 | |
| 182 | |
| 183 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 184 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 185 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 186 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 187 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 188 self.assertEqual(None, r) | |
| 189 | |
| 190 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 192 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 193 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 194 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 195 self.assertEqual('Study', r['Type']) | |
| 196 self.assertEqual(kneeStudy, r['ID']) | |
| 197 | |
| 198 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 199 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 200 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 201 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 202 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 203 self.assertEqual('Series', r['Type']) | |
| 204 self.assertEqual(kneeT1, r['ID']) | |
| 205 | |
| 206 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 208 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 209 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 210 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 211 self.assertEqual(None, r) | |
| 212 | |
| 213 DropOrthanc(_REMOTE) | |
| 214 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 215 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 216 |
| 217 | |
| 218 def test_multi_frame(self): | |
| 219 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 220 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 221 | |
| 222 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 223 self.assertEqual("L", im.mode) | |
| 224 self.assertEqual(512, im.size[0]) | |
| 225 self.assertEqual(512, im.size[1]) | |
| 226 | |
| 227 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 228 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 229 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 231 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 232 | |
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233 |
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234 def test_changes(self): |
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235 # Check emptiness |
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236 c = DoGet(_REMOTE, '/changes') |
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237 self.assertEqual(0, len(c['Changes'])) |
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238 self.assertEqual(0, c['Last']) |
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239 self.assertTrue(c['Done']) |
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240 c = DoGet(_REMOTE, '/changes?last') |
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241 self.assertEqual(0, len(c['Changes'])) |
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242 self.assertEqual(0, c['Last']) |
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243 self.assertTrue(c['Done']) |
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244 |
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245 # Add 1 instance |
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246 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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247 c = DoGet(_REMOTE, '/changes') |
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248 begin = c['Last'] |
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249 self.assertEqual(4, len(c['Changes'])) |
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250 self.assertTrue(c['Done']) |
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251 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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252 |
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253 c = DoGet(_REMOTE, '/changes?last') |
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254 self.assertEqual(1, len(c['Changes'])) |
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255 self.assertEqual(begin, c['Last']) |
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256 self.assertTrue(c['Done']) |
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257 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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258 self.assertEqual(1, len(c['Changes'])) |
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259 self.assertEqual(begin, c['Last']) |
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260 self.assertTrue(c['Done']) |
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261 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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262 self.assertEqual(1, len(c['Changes'])) |
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263 self.assertEqual(begin - 1, c['Last']) |
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264 self.assertFalse(c['Done']) |
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265 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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266 self.assertEqual(1, len(c['Changes'])) |
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267 self.assertEqual(begin - 2, c['Last']) |
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268 self.assertFalse(c['Done']) |
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269 |
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270 UploadFolder(_REMOTE, 'Knee/T1') |
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271 UploadFolder(_REMOTE, 'Knee/T2') |
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272 since = begin |
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273 countPatients = 0 |
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274 countStudies = 0 |
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275 countSeries = 0 |
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276 countInstances = 0 |
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277 completed = 0 |
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278 while True: |
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279 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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280 since = c['Last'] |
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281 for i in c['Changes']: |
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282 if i['ResourceType'] == 'Instance': |
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283 countInstances += 1 |
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284 if i['ResourceType'] == 'Patient': |
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285 countPatients += 1 |
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286 if i['ResourceType'] == 'Study': |
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287 countStudies += 1 |
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288 if i['ResourceType'] == 'Series': |
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289 countSeries += 1 |
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290 if i['ChangeType'] == 'NewInstance': |
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291 countInstances += 1 |
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292 if i['ChangeType'] == 'NewPatient': |
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293 countPatients += 1 |
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294 if i['ChangeType'] == 'NewStudy': |
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295 countStudies += 1 |
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296 if i['ChangeType'] == 'NewSeries': |
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297 countSeries += 1 |
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298 if i['ChangeType'] == 'CompletedSeries': |
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299 completed += 1 |
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300 self.assertTrue('ID' in i) |
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301 self.assertTrue('Path' in i) |
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302 self.assertTrue('Seq' in i) |
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303 if c['Done']: |
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304 break |
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305 |
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306 self.assertEqual(2 * 50, countInstances) |
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307 self.assertEqual(2 * 1, countPatients) |
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308 self.assertEqual(2 * 1, countStudies) |
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309 self.assertEqual(2 * 2, countSeries) |
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310 self.assertEqual(0, completed) |
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311 |
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312 |
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313 def test_archive(self): |
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314 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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315 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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316 |
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317 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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318 self.assertEqual(2, len(z.namelist())) |
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319 |
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320 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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321 self.assertEqual(2, len(z.namelist())) |
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322 |
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323 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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324 self.assertEqual(1, len(z.namelist())) |
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325 |
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326 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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327 |
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328 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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329 self.assertEqual(2, len(z.namelist())) |
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330 |
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331 |
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332 def test_media_archive(self): |
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333 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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334 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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335 |
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336 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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337 self.assertEqual(3, len(z.namelist())) |
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338 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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339 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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340 self.assertTrue('DICOMDIR' in z.namelist()) |
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341 |
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342 try: |
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343 os.remove('/tmp/DICOMDIR') |
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344 except: |
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345 # The file does not exist |
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346 pass |
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347 |
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348 z.extract('DICOMDIR', '/tmp') |
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349 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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350 stderr = subprocess.STDOUT).split('\n') |
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351 self.assertEqual(3, len(a)) |
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352 self.assertTrue(a[0].startswith('Warning')) |
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353 self.assertEqual('BasicDirectory', a[1]) |
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354 self.assertEqual('', a[2]) |
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355 |
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356 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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357 stderr = subprocess.STDOUT).split('\n') |
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358 self.assertEqual(1, len(a)) |
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359 self.assertEqual('', a[0]) |
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360 |
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361 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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362 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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363 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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364 |
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365 os.remove('/tmp/DICOMDIR') |
| 10 | 366 |
| 367 | |
| 368 def test_protection(self): | |
| 369 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 370 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 371 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 372 a = DoGet(_REMOTE, '/patients')[0] | |
| 373 b = DoGet(_REMOTE, '/patients')[1] | |
| 374 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 375 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 376 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 377 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 378 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 379 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 380 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 381 | |
| 382 | |
| 12 | 383 def test_raw_tags(self): |
| 10 | 384 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 385 | |
| 386 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 387 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 388 | |
| 389 s = '/instances/%s/content/' % i | |
| 390 | |
| 391 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 392 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 393 | |
| 394 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 395 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 396 | |
| 397 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 398 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 399 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 400 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 401 | |
| 402 for i in DoGet(_REMOTE, '/instances'): | |
| 403 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 404 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 405 | |
| 406 | |
| 407 def test_raw_tags_mdn(self): | |
| 408 # Bug reported by Cyril Paulus | |
| 409 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 410 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 411 | |
| 412 | |
| 413 def test_modify_instance(self): | |
| 414 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 415 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 416 json.dumps({ | |
| 417 "Replace" : { | |
| 418 "PatientName" : "hello", | |
| 419 #"PatientID" : "world" | |
| 420 }, | |
| 421 "Remove" : [ "StationName" ], | |
| 422 "RemovePrivateTags" : None | |
| 423 }), | |
| 424 'application/json') | |
| 425 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 426 | |
| 427 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 428 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 429 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 430 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 431 | |
| 432 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 433 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 434 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 436 | |
| 437 | |
| 438 def test_modify_series(self): | |
| 439 # Upload 4 images from the same series | |
| 440 for i in range(4): | |
| 441 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 442 | |
| 443 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 444 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 445 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 446 'application/json')['ID'] | |
| 447 | |
| 448 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 449 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 450 self.assertEqual(4, len(instances)) | |
| 451 for i in instances: | |
| 452 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 453 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 454 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 455 | |
| 456 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 457 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 458 | |
| 459 | |
| 460 def test_modify_study(self): | |
| 461 # Upload 4 images from the 2 series of the same study | |
| 462 for i in range(4): | |
| 463 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 464 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 465 | |
| 466 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 467 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 468 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 469 'application/json')['ID'] | |
| 470 | |
| 471 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 472 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 473 self.assertEqual(2, len(series)) | |
| 474 for s in series: | |
| 475 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 476 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 477 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 478 | |
| 479 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 480 for i in instances: | |
| 481 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 482 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 483 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 484 | |
| 485 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 486 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 487 | |
| 488 | |
| 489 def test_anonymize_series(self): | |
| 490 # Upload 4 images from the same series | |
| 491 for i in range(4): | |
| 492 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 493 | |
| 494 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 495 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 496 '{}', | |
| 497 'application/json')['ID'] | |
| 498 | |
| 499 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 500 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 501 self.assertEqual(4, len(instances)) | |
| 502 for i in instances: | |
| 503 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 504 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 505 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 506 | |
| 507 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 508 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 509 | |
| 510 | |
| 511 def test_anonymize_study(self): | |
| 512 # Upload 4 images from the 2 series of the same study | |
| 513 for i in range(4): | |
| 514 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 515 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 516 | |
| 517 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 518 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 519 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 520 'application/json')['ID'] | |
| 521 | |
| 522 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 523 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 524 self.assertEqual(2, len(series)) | |
| 525 for s in series: | |
| 526 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 527 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 528 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 529 | |
| 530 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 531 for i in instances: | |
| 532 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 533 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 534 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 535 | |
| 536 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 537 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 538 |
| 539 | |
| 540 | |
| 541 def test_storescu(self): | |
| 542 # Check emptiness | |
| 543 e = DoGet(_REMOTE, '/exports') | |
| 544 self.assertEqual(0, len(e['Exports'])) | |
| 545 self.assertEqual(0, e['Last']) | |
| 546 self.assertTrue(e['Done']) | |
| 547 e = DoGet(_REMOTE, '/exports?last') | |
| 548 self.assertEqual(0, len(e['Exports'])) | |
| 549 self.assertEqual(0, e['Last']) | |
| 550 self.assertTrue(e['Done']) | |
| 551 | |
| 552 # Add 1 instance | |
| 553 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 554 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 555 | |
| 556 # Export the instance | |
| 557 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 558 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 559 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 560 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 561 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 562 | |
| 563 e = DoGet(_REMOTE, '/exports') | |
| 564 self.assertEqual(1, len(e['Exports'])) | |
| 565 self.assertTrue(e['Done']) | |
| 566 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 567 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 568 self.assertEqual(1, len(e['Exports'])) | |
| 569 self.assertTrue(e['Done']) | |
| 570 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 571 e = DoGet(_REMOTE, '/exports?last') | |
| 572 self.assertEqual(1, len(e['Exports'])) | |
| 573 self.assertTrue(e['Done']) | |
| 574 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 575 seqInstance = e['Last'] | |
| 576 | |
| 577 # Export the series | |
| 578 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 579 | |
| 580 e = DoGet(_REMOTE, '/exports') | |
| 581 self.assertEqual(2, len(e['Exports'])) | |
| 582 self.assertTrue(e['Done']) | |
| 583 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 584 seqSeries = e['Last'] | |
| 585 self.assertNotEqual(seqInstance, seqSeries) | |
| 586 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 587 self.assertEqual(1, len(e['Exports'])) | |
| 588 self.assertFalse(e['Done']) | |
| 589 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 590 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 591 self.assertEqual(1, len(e['Exports'])) | |
| 592 self.assertTrue(e['Done']) | |
| 593 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 594 e = DoGet(_REMOTE, '/exports?last') | |
| 595 self.assertEqual(1, len(e['Exports'])) | |
| 596 self.assertTrue(e['Done']) | |
| 597 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 598 | |
| 599 # Export the study | |
| 600 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 601 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 602 | |
| 603 # Export the patient | |
| 604 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 605 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 606 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 607 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 608 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 609 | |
| 610 e = DoGet(_REMOTE, '/exports') | |
| 611 self.assertEqual(4, len(e['Exports'])) | |
| 612 self.assertTrue(e['Done']) | |
| 613 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 614 seqPatient = e['Last'] | |
| 615 self.assertNotEqual(seqInstance, seqSeries) | |
| 616 self.assertNotEqual(seqSeries, seqStudy) | |
| 617 self.assertNotEqual(seqStudy, seqPatient) | |
| 618 self.assertTrue(seqInstance < seqSeries) | |
| 619 self.assertTrue(seqSeries < seqStudy) | |
| 620 self.assertTrue(seqStudy < seqPatient) | |
| 621 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 622 self.assertEqual(1, len(e['Exports'])) | |
| 623 self.assertFalse(e['Done']) | |
| 624 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 625 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 626 self.assertEqual(1, len(e['Exports'])) | |
| 627 self.assertFalse(e['Done']) | |
| 628 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 629 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 630 self.assertEqual(1, len(e['Exports'])) | |
| 631 self.assertFalse(e['Done']) | |
| 632 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 633 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 634 self.assertEqual(1, len(e['Exports'])) | |
| 635 self.assertTrue(e['Done']) | |
| 636 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 637 e = DoGet(_REMOTE, '/exports?last') | |
| 638 self.assertEqual(1, len(e['Exports'])) | |
| 639 self.assertTrue(e['Done']) | |
| 640 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 641 | |
| 642 | |
| 643 # Check the content of the logged information | |
| 644 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 645 | |
| 646 if 'PatientID' in e[0]: | |
| 647 # Since Orthanc 0.8.6 | |
| 648 patient = 'PatientID' | |
| 649 study = 'StudyInstanceUID' | |
| 650 series = 'SeriesInstanceUID' | |
| 651 instance = 'SOPInstanceUID' | |
| 652 else: | |
| 653 # Up to Orthanc 0.8.5 | |
| 654 patient = 'PatientId' | |
| 655 study = 'StudyInstanceUid' | |
| 656 series = 'SeriesInstanceUid' | |
| 657 instance = 'SopInstanceUid' | |
| 658 | |
| 659 for k in range(4): | |
| 660 self.assertTrue('Date' in e[k]) | |
| 661 self.assertTrue('Seq' in e[k]) | |
| 662 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 663 | |
| 664 self.assertEqual(10, len(e[0])) | |
| 665 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 666 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 667 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 668 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 669 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 670 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 671 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 672 | |
| 673 self.assertEqual(9, len(e[1])) | |
| 674 self.assertEqual('Series', e[1]['ResourceType']) | |
| 675 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 676 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 677 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 678 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 679 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 680 | |
| 681 self.assertEqual(8, len(e[2])) | |
| 682 self.assertEqual('Study', e[2]['ResourceType']) | |
| 683 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 684 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 685 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 686 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 687 | |
| 688 self.assertEqual(7, len(e[3])) | |
| 689 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 690 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 691 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 692 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 693 | |
| 694 DropOrthanc(_REMOTE) | |
| 695 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 696 | |
| 697 | |
| 698 def test_store_peer(self): | |
| 699 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 700 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 701 | |
| 702 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 703 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 704 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 705 | |
| 706 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 707 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 708 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 709 | |
| 710 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 711 | |
| 712 DropOrthanc(_REMOTE) | |
| 713 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 714 | |
| 715 | |
| 716 def test_bulk_storescu(self): | |
| 717 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 718 | |
| 719 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 720 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 721 | |
| 722 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 723 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 724 | |
| 725 DropOrthanc(_LOCAL) | |
| 726 | |
| 727 # Send using patient's UUID | |
| 728 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 729 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 730 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 731 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 732 | |
| 733 | |
| 734 def test_color(self): | |
| 735 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 736 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 737 self.assertEqual("RGB", im.mode) | |
| 738 self.assertEqual(41, im.size[0]) | |
| 739 self.assertEqual(41, im.size[1]) | |
| 740 | |
| 741 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 742 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 743 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 744 | |
| 745 | |
| 12 | 746 def test_faking_ruby_put(self): |
| 747 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 748 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 749 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 750 a = DoGet(_REMOTE, '/patients')[0] | |
| 751 b = DoGet(_REMOTE, '/patients')[1] | |
| 752 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 753 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 754 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 755 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 756 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 757 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 758 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 759 | |
| 760 | |
| 761 def test_faking_ruby_delete(self): | |
| 762 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 763 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 764 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 765 a = DoGet(_REMOTE, '/patients')[0] | |
| 766 b = DoGet(_REMOTE, '/patients')[1] | |
| 767 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 768 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 769 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 770 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 771 | |
| 772 | |
| 773 def test_faking_google_put(self): | |
| 774 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 775 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 776 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 777 a = DoGet(_REMOTE, '/patients')[0] | |
| 778 b = DoGet(_REMOTE, '/patients')[1] | |
| 779 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 780 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 781 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 782 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 783 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 784 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 785 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 786 | |
| 787 | |
| 788 def test_faking_google_delete(self): | |
| 789 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 790 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 791 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 792 a = DoGet(_REMOTE, '/patients')[0] | |
| 793 b = DoGet(_REMOTE, '/patients')[1] | |
| 794 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 795 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 796 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 797 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 798 | |
| 799 | |
| 800 def test_lua(self): | |
| 801 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 802 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 803 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 804 | |
| 805 | |
| 806 def test_metadata(self): | |
| 807 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 808 p = DoGet(_REMOTE, '/patients')[0] | |
| 809 i = DoGet(_REMOTE, '/instances')[0] | |
| 810 | |
| 811 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 812 self.assertEqual(1, len(m)) | |
| 813 self.assertEqual('LastUpdate', m[0]) | |
| 814 | |
| 815 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 816 self.assertEqual(3, len(m)) | |
| 817 self.assertTrue('IndexInSeries' in m) | |
| 818 self.assertTrue('ReceptionDate' in m) | |
| 819 self.assertTrue('RemoteAET' in m) | |
| 820 | |
| 821 # Play with custom metadata | |
| 822 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 823 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 824 self.assertEqual(2, len(m)) | |
| 825 self.assertTrue('LastUpdate' in m) | |
| 826 self.assertTrue('5555' in m) | |
| 827 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 828 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 829 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 830 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 831 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 832 self.assertEqual(1, len(m)) | |
| 833 self.assertTrue('LastUpdate' in m) | |
| 13 | 834 |
| 835 | |
| 836 def test_statistics(self): | |
| 837 # Upload 16 instances | |
| 838 for i in range(4): | |
| 839 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 840 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 842 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 843 | |
| 844 s = DoGet(_REMOTE, '/statistics') | |
| 845 self.assertEqual(16, s['CountInstances']) | |
| 846 self.assertEqual(2, s['CountPatients']) | |
| 847 self.assertEqual(2, s['CountStudies']) | |
| 848 self.assertEqual(4, s['CountSeries']) | |
| 849 d = int(s['TotalUncompressedSize']) | |
| 850 | |
| 851 e = 0 | |
| 852 for patient in DoGet(_REMOTE, '/patients'): | |
| 853 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 854 self.assertEqual(8, s['CountInstances']) | |
| 855 self.assertEqual(1, s['CountStudies']) | |
| 856 self.assertEqual(2, s['CountSeries']) | |
| 857 e += int(s['UncompressedSize']) | |
| 858 | |
| 859 for study in DoGet(_REMOTE, '/studies'): | |
| 860 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 861 self.assertEqual(8, s['CountInstances']) | |
| 862 self.assertEqual(2, s['CountSeries']) | |
| 863 e += int(s['UncompressedSize']) | |
| 864 | |
| 865 for series in DoGet(_REMOTE, '/series'): | |
| 866 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 867 self.assertEqual(4, s['CountInstances']) | |
| 868 e += int(s['UncompressedSize']) | |
| 869 | |
| 870 self.assertEqual(3 * d, e) | |
| 871 | |
| 872 | |
| 873 def test_custom_attachment(self): | |
| 874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 875 patient = DoGet(_REMOTE, '/patients')[0] | |
| 876 instance = DoGet(_REMOTE, '/instances')[0] | |
| 877 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 878 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 879 | |
| 880 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 881 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 882 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 883 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 884 | |
| 885 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 886 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 887 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 888 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 889 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 890 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 891 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 892 | |
| 893 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 894 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 895 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 896 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 897 size + | |
| 898 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 899 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 900 | |
| 901 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 902 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 903 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 904 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 905 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 906 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 907 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 908 | |
| 909 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 910 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 911 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 912 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 913 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 914 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 915 | |
| 916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 917 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 918 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 919 | |
| 920 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 921 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 922 | |
| 923 | |
| 924 def test_incoming_storescu(self): | |
| 925 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 926 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 927 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
| 928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 929 | |
| 930 | |
| 931 def test_incoming_findscu(self): | |
| 932 def CallFindScu(args): | |
| 933 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
| 934 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 935 stderr=subprocess.PIPE) | |
| 936 return p.communicate()[1] | |
| 937 | |
| 938 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 939 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 940 | |
| 941 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 942 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 943 self.assertEqual(2, len(patientNames)) | |
| 944 self.assertTrue('Test Patient BG ' in patientNames) | |
| 945 self.assertTrue('Anonymized' in patientNames) | |
| 946 | |
| 947 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 948 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 949 self.assertEqual(2, len(series)) | |
| 950 self.assertTrue('20070208' in series) | |
| 951 self.assertTrue('19980312' in series) | |
| 952 | |
| 953 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 954 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 955 self.assertEqual(1, len(series)) | |
| 956 | |
| 957 # Test the "CaseSentitivePN" flag (false by default) | |
| 958 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 959 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 960 self.assertEqual(1, len(series)) | |
| 961 | |
| 962 | |
| 963 @unittest.skip("This test fails, to fix") | |
| 964 def test_incoming_movescu(self): | |
| 965 def CallMoveScu(args): | |
| 966 subprocess.check_call([ 'movescu', | |
| 967 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 968 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 969 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 970 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 971 stderr=subprocess.PIPE) | |
| 972 | |
| 973 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 974 | |
| 975 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 976 #CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) | |
| 977 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 978 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 979 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 980 | |
| 981 | |
| 982 def test_findscu(self): | |
| 983 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 984 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 985 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 986 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 987 | |
| 988 # Test the "find-patient" level | |
| 989 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 990 self.assertEqual(1, len(p)) | |
| 991 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 992 | |
| 993 # Test wildcards constraints. The "LO" value representation | |
| 994 # for PatientID is always case-sensitive, but the "PN" for | |
| 995 # PatientName might depend on the implementation: | |
| 996 # "GenerateConfigurationForTests.py" will force it to be case | |
| 997 # insensitive (which was the default until Orthanc 0.8.6). | |
| 998 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 999 self.assertEqual(1, len(p)) | |
| 1000 | |
| 1001 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1002 self.assertEqual(1, len(p)) | |
| 1003 | |
| 1004 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1005 self.assertEqual(1, len(p)) | |
| 1006 | |
| 1007 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1008 self.assertEqual(1, len(p)) | |
| 1009 | |
| 1010 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1011 self.assertEqual(0, len(p)) | |
| 1012 | |
| 1013 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1014 self.assertEqual(0, len(p)) | |
| 1015 | |
| 1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1017 self.assertEqual(0, len(p)) | |
| 1018 | |
| 1019 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1020 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1021 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1022 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1023 | |
| 1024 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1025 self.assertEqual(2, len(p)) | |
| 1026 | |
| 1027 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1028 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1029 self.assertEqual(1, len(s)) | |
| 1030 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1031 | |
| 1032 # Test range searches | |
| 1033 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1034 'StudyDate' : '-20070101' }) | |
| 1035 self.assertEqual(0, len(t)) | |
| 1036 | |
| 1037 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1038 'StudyDate' : '20090101-' }) | |
| 1039 self.assertEqual(0, len(t)) | |
| 1040 | |
| 1041 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1042 'StudyDate' : '20070101-' }) | |
| 1043 self.assertEqual(1, len(t)) | |
| 1044 | |
| 1045 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1046 'StudyDate' : '-20090101' }) | |
| 1047 self.assertEqual(1, len(t)) | |
| 1048 | |
| 1049 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1050 'StudyDate' : '20070207-20070207' }) | |
| 1051 self.assertEqual(0, len(t)) | |
| 1052 | |
| 1053 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1054 'StudyDate' : '20070208-20070208' }) | |
| 1055 self.assertEqual(1, len(t)) | |
| 1056 | |
| 1057 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1058 'StudyDate' : '20070209-20070209' }) | |
| 1059 self.assertEqual(0, len(t)) | |
| 1060 | |
| 1061 # Test the ModalitiesInStudy tag | |
| 1062 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1063 'PatientID' : 'B9uTHKOZ', | |
| 1064 'ModalitiesInStudy' : 'US' }) | |
| 1065 self.assertEqual(0, len(t)) | |
| 1066 | |
| 1067 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1068 'PatientID' : 'B9uTHKOZ', | |
| 1069 'ModalitiesInStudy' : 'CT' }) | |
| 1070 self.assertEqual(1, len(t)) | |
| 1071 | |
| 1072 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1073 'PatientID' : 'B9uTHKOZ', | |
| 1074 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1075 self.assertEqual(1, len(t)) | |
| 1076 | |
| 1077 # Test the "find-series" level | |
| 1078 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1079 'PatientID' : 'B9uTHKOZ', | |
| 1080 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1081 self.assertEqual(1, len(t)) | |
| 1082 | |
| 1083 # Test "\" separator | |
| 1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1085 'PatientID' : 'B9uTHKOZ', | |
| 1086 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1087 'Modality' : 'MR\\CT\\US' }) | |
| 1088 self.assertEqual(1, len(t)) | |
| 1089 | |
| 1090 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1091 'PatientID' : 'B9uTHKOZ', | |
| 1092 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1093 'Modality' : 'MR\\US' }) | |
| 1094 self.assertEqual(0, len(t)) | |
| 1095 | |
| 1096 | |
| 1097 def test_update_modalities(self): | |
| 1098 try: | |
| 1099 DoDelete(_REMOTE, '/modalities/toto') | |
| 1100 except: | |
| 1101 pass | |
| 1102 try: | |
| 1103 DoDelete(_REMOTE, '/modalities/tata') | |
| 1104 except: | |
| 1105 pass | |
| 1106 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1107 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1108 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1109 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1110 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1111 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1112 DoDelete(_REMOTE, '/modalities/toto') | |
| 1113 DoDelete(_REMOTE, '/modalities/tata') | |
| 1114 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1115 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1116 | |
| 1117 | |
| 1118 def test_update_peers(self): | |
| 1119 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1120 try: | |
| 1121 DoDelete(_REMOTE, '/peers/toto') | |
| 1122 except: | |
| 1123 pass | |
| 1124 try: | |
| 1125 DoDelete(_REMOTE, '/peers/tata') | |
| 1126 except: | |
| 1127 pass | |
| 1128 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1129 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1130 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1131 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1132 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1133 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1134 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1135 DoDelete(_REMOTE, '/peers/toto') | |
| 1136 DoDelete(_REMOTE, '/peers/tata') | |
| 1137 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1138 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1139 | |
| 1140 | |
| 1141 def test_mesterhazy_modification(self): | |
| 1142 # When I modify a series ( eg. curl | |
| 1143 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1144 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1145 # series is added to a new Study, instead of the existing | |
| 1146 # Study. Fixed in Orthanc 0.7.5 | |
| 1147 | |
| 1148 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1149 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1150 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1151 | |
| 1152 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1153 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1154 | |
| 1155 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1156 | |
| 1157 | |
| 1158 def test_create(self): | |
| 1159 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1160 json.dumps({ | |
| 1161 'PatientName' : 'Jodogne', | |
| 1162 'Modality' : 'CT', | |
| 1163 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1164 })) | |
| 1165 | |
| 1166 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1167 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1168 | |
| 1169 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1170 self.assertEqual((5, 5), png.size) | |
| 1171 | |
| 1172 | |
| 1173 def test_pilates(self): | |
| 1174 # "SCU failed error when accessing orthanc with osirix" by | |
| 1175 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1176 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1177 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1178 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1179 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1180 | |
| 1181 | |
| 1182 def test_shared_tags(self): | |
| 1183 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1184 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1185 p = DoGet(_REMOTE, '/patients')[0] | |
| 1186 | |
| 1187 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1188 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1189 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1190 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1191 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1192 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1193 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1194 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1195 | |
| 1196 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1197 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1198 | |
| 1199 | |
| 1200 def test_modules(self): | |
| 1201 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1202 p = DoGet(_REMOTE, '/patients')[0] | |
| 1203 s = DoGet(_REMOTE, '/studies')[0] | |
| 1204 t = DoGet(_REMOTE, '/series')[0] | |
| 1205 | |
| 1206 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1207 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1208 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1209 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1210 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1211 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1212 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1213 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1214 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1215 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1216 | |
| 1217 | |
| 1218 def test_auto_directory(self): | |
| 1219 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1220 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1221 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1222 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1223 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1224 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1225 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1226 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1227 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1228 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1229 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1230 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1231 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1232 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 1234 | |
| 1235 | |
| 1236 def test_echo(self): | |
| 1237 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1238 | |
| 1239 | |
| 1240 def test_xml(self): | |
| 1241 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1242 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1243 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1244 self.assertEqual(len(items), len(json)) | |
| 1245 | |
| 1246 self.assertTrue('dicom-conformance' in json) | |
| 1247 | |
| 1248 ok = False | |
| 1249 for i in items: | |
| 1250 if i.childNodes[0].data == 'dicom-conformance': | |
| 1251 ok = True | |
| 1252 self.assertTrue(ok) | |
| 1253 | |
| 1254 | |
| 1255 def test_issue_16(self): | |
| 1256 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
| 1257 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1258 self.assertEqual('0018,1063', t) | |
| 1259 | |
| 1260 | |
| 1261 def test_issue_22(self): | |
| 1262 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1263 a = [ | |
| 1264 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1265 "c69eee9a51eea3e8611e82e578897254", | |
| 1266 "315666be83e2d0111c77bc0996d84901", | |
| 1267 "3e27aa959d911172c48a1436443c72b1", | |
| 1268 "958642c9e7e9d232d3869faff546058c", | |
| 1269 "5e7ea8e3e4230cae707d143481355c59", | |
| 1270 "eda37f83558d858a596175aed8b2ad47", | |
| 1271 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1272 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1273 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1274 "e2f39e85896fe58876654b94cd0b5013", | |
| 1275 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1276 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1277 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1278 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1279 "806b8b3e300c615099c11a5ec23465aa", | |
| 1280 "7c836aa298ba6eef96434579af631a11", | |
| 1281 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1282 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1283 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1284 "44e6670f127e612a2b4aa60a0d207698", | |
| 1285 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1286 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1287 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1288 ] | |
| 1289 | |
| 1290 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1291 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1292 | |
| 1293 for i in range(len(a)): | |
| 1294 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1295 | |
| 1296 | |
| 1297 def test_issue_19(self): | |
| 1298 # This is an image with "YBR_FULL" photometric interpretation | |
| 1299 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm | |
| 1300 | |
| 1301 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 1302 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview') | |
| 1303 | |
| 1304 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png | |
| 1305 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i)) | |
| 1306 | |
| 1307 | |
| 1308 def test_issue_37(self): | |
| 1309 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
| 1310 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1311 | |
| 1312 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1313 'CaseSensitive' : True, | |
| 1314 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1315 self.assertEqual(1, len(a)) |