Mercurial > hg > orthanc-tests

annotate NewTests/ExtraMainDicomTags/test_extra_main_dicom_tags.py @ 486:6144ef431512

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new tests for sequences in ExtraMainDicomTags
author Alain Mazy <am@osimis.io>
date Tue, 28 Jun 2022 18:38:21 +0200
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children ed0a51317c0b
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486
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1 import unittest
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2 import time
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3 import os
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4 from helpers import OrthancTestCase, Helpers
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5
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6 from orthanc_api_client import OrthancApiClient, generate_test_dicom_file
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7 from orthanc_tools import OrthancTestDbPopulator
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8
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9 import pathlib
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10 import glob
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11 here = pathlib.Path(__file__).parent.resolve()
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12
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13
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14 class TestExtraMainDicomTags(OrthancTestCase):
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15
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16 @classmethod
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17 def prepare(cls):
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18 print('-------------- preparing TestExtraMainDicomTags tests')
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19
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20 cls.clear_storage(storage_name="ExtraMainDicomTags")
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21
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22 config = {
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23 "ExtraMainDicomTags": {
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24 "Instance" : [
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25 "Rows",
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26 "PerformedProtocolCodeSequence"
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27 ],
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28 "Series" : [
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29 "RequestAttributesSequence"
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30 ],
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31 "Study": [],
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32 "Patient": []
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33 },
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34 "OverwriteInstances": True,
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35 "DicomWeb" : {
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36 "StudiesMetadata" : "MainDicomTags",
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37 "SeriesMetadata": "MainDicomTags"
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38 }
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39 }
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40
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41 config_path = cls.generate_configuration(
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42 config_name="extra_main_dicom_tags",
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43 storage_name="ExtraMainDicomTags",
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44 config=config,
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45 plugins=Helpers.plugins
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46 )
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47
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48 print('-------------- prepared ExtraMainDicomTags tests')
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49 if Helpers.break_after_preparation:
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50 print(f"++++ It is now time to start your Orthanc under tests with configuration file '{config_path}' +++++")
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51 input("Press Enter to continue")
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52 else:
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53 print('-------------- launching ExtraMainDicomTags tests')
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54 cls.launch_orthanc_under_tests(
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55 config_path=config_path,
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56 config_name="extra_main_dicom_tags",
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57 storage_name="ExtraMainDicomTags",
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58 plugins=Helpers.plugins
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59 )
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60
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61 print('-------------- waiting for orthanc-under-tests to be available')
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62 cls.o.wait_started()
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63
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64 def test_main_dicom_tags(self):
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65
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66 # upload a study
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67 self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
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68
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69 instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
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70
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71 self.assertIn("Rows", instance["MainDicomTags"])
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72 self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
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73
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74 def test_main_dicom_tags_full(self):
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75
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76 # upload a study
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77 self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
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78
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79 instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8?full").json()
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80
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81 self.assertIn("0028,0010", instance["MainDicomTags"])
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82 self.assertIn("0040,0260", instance["MainDicomTags"])
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83
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84
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85 def test_main_reconstruct(self):
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86
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87 # upload a study
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88 self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
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89
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90 instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
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91
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92 self.assertIn("Rows", instance["MainDicomTags"])
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93 self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
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94
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95 # reconstruct instance
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96 self.o.post(endpoint="/instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8/reconstruct", json={})
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97 instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
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98 self.assertIn("Rows", instance["MainDicomTags"])
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99 self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
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100
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101
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102 def test_tools_find(self):
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103
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104 # upload a study
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105 self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
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106
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107 # instance level
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108 r = self.o.post(
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109 endpoint="/tools/find",
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110 json={
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111 "Level": "Instances",
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112 "Query": {
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113 "PatientID": "5Yp0E"
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114 },
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115 "Expand": True,
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116 "RequestedTags" : ["Rows", "PerformedProtocolCodeSequence", "ReferencedStudySequence"] # "ReferencedStudySequence" is not stored in MainDicomTags !
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117 }
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118 )
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119
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120 instances = r.json()
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121 self.assertEqual(1, len(instances))
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122 self.assertIn("Rows", instances[0]["RequestedTags"])
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123 self.assertIn("PerformedProtocolCodeSequence", instances[0]["RequestedTags"])
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124 self.assertIn("ReferencedStudySequence", instances[0]["RequestedTags"])
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125
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126
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127 # series level, request a sequence
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128 r = self.o.post(
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129 endpoint="/tools/find",
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130 json={
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131 "Level": "Series",
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132 "Query": {
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133 "PatientID": "5Yp0E"
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134 },
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135 "Expand": True,
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136 "RequestedTags" : ["RequestAttributesSequence"]
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137 }
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138 )
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139
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140 series = r.json()
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141 self.assertEqual(1, len(series))
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142 self.assertIn("RequestAttributesSequence", series[0]["RequestedTags"])
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143
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144
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145
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146 def test_dicom_web_metadata(self):
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147
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148 # upload a study
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149 self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
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150
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151 metadata = self.o.get(
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152 endpoint="/dicom-web/studies/2.16.840.1.113669.632.20.1211.10000357775/metadata"
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153 ).json()
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154
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155 self.assertEqual(1, len(metadata))
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156 self.assertIn("00280010", metadata[0]) # Rows
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157 self.assertNotIn("00280011", metadata[0]) # Columns should not be stored !
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158 self.assertIn("00400260", metadata[0]) # PerformedProtocolCodeSequence