diff NewTests/ExtraMainDicomTags/test_extra_main_dicom_tags.py @ 486:6144ef431512

new tests for sequences in ExtraMainDicomTags
author Alain Mazy <am@osimis.io>
date Tue, 28 Jun 2022 18:38:21 +0200
parents
children ed0a51317c0b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NewTests/ExtraMainDicomTags/test_extra_main_dicom_tags.py	Tue Jun 28 18:38:21 2022 +0200
@@ -0,0 +1,158 @@
+import unittest
+import time
+import os
+from helpers import OrthancTestCase, Helpers
+
+from orthanc_api_client import OrthancApiClient, generate_test_dicom_file
+from orthanc_tools import OrthancTestDbPopulator
+
+import pathlib
+import glob
+here = pathlib.Path(__file__).parent.resolve()
+
+
+class TestExtraMainDicomTags(OrthancTestCase):
+
+    @classmethod
+    def prepare(cls):
+        print('-------------- preparing TestExtraMainDicomTags tests')
+
+        cls.clear_storage(storage_name="ExtraMainDicomTags")
+
+        config = {
+                "ExtraMainDicomTags": {
+                    "Instance" : [
+                        "Rows",
+                        "PerformedProtocolCodeSequence"
+                    ],
+                    "Series" : [
+                        "RequestAttributesSequence"
+                    ],
+                    "Study": [],
+                    "Patient": []
+                },
+                "OverwriteInstances": True,
+                "DicomWeb" : {
+                    "StudiesMetadata" : "MainDicomTags",
+                    "SeriesMetadata": "MainDicomTags"
+                }
+            }
+
+        config_path = cls.generate_configuration(
+            config_name="extra_main_dicom_tags",
+            storage_name="ExtraMainDicomTags",
+            config=config,
+            plugins=Helpers.plugins
+        )
+
+        print('-------------- prepared ExtraMainDicomTags tests')
+        if Helpers.break_after_preparation:
+            print(f"++++ It is now time to start your Orthanc under tests with configuration file '{config_path}' +++++")
+            input("Press Enter to continue")
+        else:
+            print('-------------- launching ExtraMainDicomTags tests')
+            cls.launch_orthanc_under_tests(
+                config_path=config_path,
+                config_name="extra_main_dicom_tags",
+                storage_name="ExtraMainDicomTags",
+                plugins=Helpers.plugins
+            )
+
+        print('-------------- waiting for orthanc-under-tests to be available')
+        cls.o.wait_started()
+        
+    def test_main_dicom_tags(self):
+
+        # upload a study
+        self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
+
+        instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
+
+        self.assertIn("Rows", instance["MainDicomTags"])
+        self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
+
+    def test_main_dicom_tags_full(self):
+
+        # upload a study
+        self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
+
+        instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8?full").json()
+
+        self.assertIn("0028,0010", instance["MainDicomTags"])
+        self.assertIn("0040,0260", instance["MainDicomTags"])
+
+
+    def test_main_reconstruct(self):
+
+        # upload a study
+        self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
+
+        instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
+
+        self.assertIn("Rows", instance["MainDicomTags"])
+        self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
+
+        # reconstruct instance
+        self.o.post(endpoint="/instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8/reconstruct", json={})
+        instance = self.o.get(endpoint="instances/4dc71dc0-6093b5f8-ca67aa8a-07b18ff5-95dbe3c8").json()
+        self.assertIn("Rows", instance["MainDicomTags"])
+        self.assertIn("PerformedProtocolCodeSequence", instance["MainDicomTags"])
+
+
+    def test_tools_find(self):
+
+        # upload a study
+        self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
+
+        # instance level
+        r = self.o.post(
+            endpoint="/tools/find",
+            json={
+                "Level": "Instances",
+                "Query": {
+                    "PatientID": "5Yp0E"
+                },
+                "Expand": True,
+                "RequestedTags" : ["Rows", "PerformedProtocolCodeSequence", "ReferencedStudySequence"]  # "ReferencedStudySequence" is not stored in MainDicomTags !
+            }
+        )
+
+        instances = r.json()
+        self.assertEqual(1, len(instances))
+        self.assertIn("Rows", instances[0]["RequestedTags"])
+        self.assertIn("PerformedProtocolCodeSequence", instances[0]["RequestedTags"])
+        self.assertIn("ReferencedStudySequence", instances[0]["RequestedTags"])
+       
+
+        # series level, request a sequence
+        r = self.o.post(
+            endpoint="/tools/find",
+            json={
+                "Level": "Series",
+                "Query": {
+                    "PatientID": "5Yp0E"
+                },
+                "Expand": True,
+                "RequestedTags" : ["RequestAttributesSequence"]
+            }
+        )
+
+        series = r.json()
+        self.assertEqual(1, len(series))
+        self.assertIn("RequestAttributesSequence", series[0]["RequestedTags"])
+
+
+
+    def test_dicom_web_metadata(self):
+
+        # upload a study
+        self.o.upload_file(here / "../../Database/Brainix/Flair/IM-0001-0001.dcm")
+
+        metadata = self.o.get(
+            endpoint="/dicom-web/studies/2.16.840.1.113669.632.20.1211.10000357775/metadata"
+        ).json()
+
+        self.assertEqual(1, len(metadata))
+        self.assertIn("00280010", metadata[0])   # Rows
+        self.assertNotIn("00280011", metadata[0])   # Columns should not be stored !
+        self.assertIn("00400260", metadata[0])   # PerformedProtocolCodeSequence
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