annotate Framework/Toolbox/DicomStructureSet.cpp @ 1478:fab6c6e795a3

Framework/Toolbox/SortedFrames.cpp
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 18 Jun 2020 16:01:00 +0200
parents 30deba7bc8e2
children d8af188ab545
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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28956ed68280 agpl license
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "DicomStructureSet.h"
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23 #include "DicomStructureSetUtils.h"
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25 #include "../Toolbox/GeometryToolbox.h"
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27 #include <Logging.h>
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28 #include <OrthancException.h>
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29 #include <Toolbox.h>
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30 #include <DicomDatasetReader.h>
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32 #if defined(_MSC_VER)
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33 # pragma warning(push)
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34 # pragma warning(disable:4244)
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35 #endif
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37 #include <limits>
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38 #include <stdio.h>
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39 #include <boost/geometry.hpp>
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40 #include <boost/geometry/geometries/point_xy.hpp>
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41 #include <boost/geometry/geometries/polygon.hpp>
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42 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
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44 #if defined(_MSC_VER)
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45 # pragma warning(pop)
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46 #endif
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47
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48 #if ORTHANC_ENABLE_DCMTK == 1
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49 # include "ParsedDicomDataset.h"
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50 #endif
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53 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
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54 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
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55 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
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56
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57
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58 static void Union(BoostMultiPolygon& output,
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59 std::vector<BoostPolygon>& input)
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60 {
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61 for (size_t i = 0; i < input.size(); i++)
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62 {
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63 boost::geometry::correct(input[i]);
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64 }
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66 if (input.size() == 0)
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67 {
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68 output.clear();
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69 }
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70 else if (input.size() == 1)
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71 {
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72 output.resize(1);
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73 output[0] = input[0];
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74 }
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75 else
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76 {
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77 boost::geometry::union_(input[0], input[1], output);
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78
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79 for (size_t i = 0; i < input.size(); i++)
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80 {
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81 BoostMultiPolygon tmp;
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82 boost::geometry::union_(output, input[i], tmp);
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83 output = tmp;
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84 }
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85 }
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86 }
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87
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88 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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89
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90 static BoostPolygon CreateRectangle(float x1, float y1,
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91 float x2, float y2)
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92 {
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93 BoostPolygon r;
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94 boost::geometry::append(r, BoostPoint(x1, y1));
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95 boost::geometry::append(r, BoostPoint(x1, y2));
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96 boost::geometry::append(r, BoostPoint(x2, y2));
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97 boost::geometry::append(r, BoostPoint(x2, y1));
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98 return r;
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99 }
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100
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101 #else
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102
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103 namespace OrthancStone
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104 {
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105 static RtStructRectangleInSlab CreateRectangle(float x1, float y1,
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106 float x2, float y2)
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107 {
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108 RtStructRectangleInSlab rect;
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109 rect.xmin = std::min(x1, x2);
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110 rect.xmax = std::max(x1, x2);
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111 rect.ymin = std::min(y1, y2);
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112 rect.ymax = std::max(y1, y2);
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113 return rect;
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114 }
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115
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116 bool CompareRectanglesForProjection(const std::pair<RtStructRectangleInSlab,double>& r1, const std::pair<RtStructRectangleInSlab, double>& r2)
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117 {
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118 return r1.second < r2.second;
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119 }
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120
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121 bool CompareSlabsY(const RtStructRectanglesInSlab& r1, const RtStructRectanglesInSlab& r2)
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122 {
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123 if ((r1.size() == 0) || (r2.size() == 0))
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124 return false;
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125
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126 return r1[0].ymax < r2[0].ymax;
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127 }
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128 }
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129
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130 #endif
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132 namespace OrthancStone
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133 {
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134 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
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135 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
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136 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
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137 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
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138 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
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139 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
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140 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
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141 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
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142 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
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143 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
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144 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
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145 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
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146
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147
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148 static uint8_t ConvertColor(double v)
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149 {
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150 if (v < 0)
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151 {
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152 return 0;
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153 }
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154 else if (v >= 255)
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155 {
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156 return 255;
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157 }
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158 else
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159 {
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160 return static_cast<uint8_t>(v);
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161 }
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162 }
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163
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164
118
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165 static bool ParseVector(Vector& target,
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166 const OrthancPlugins::IDicomDataset& dataset,
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167 const OrthancPlugins::DicomPath& tag)
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168 {
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169 std::string value;
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170 return (dataset.GetStringValue(value, tag) &&
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171 LinearAlgebra::ParseVector(target, value));
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172 }
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173
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174 void DicomStructureSet::Polygon::CheckPointIsOnSlice(const Vector& v) const
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175 {
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176 if (hasSlice_)
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177 {
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178 double magnitude =
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179 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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180 if(!LinearAlgebra::IsNear(
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181 magnitude,
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182 projectionAlongNormal_,
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183 sliceThickness_ / 2.0 /* in mm */ ))
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184 {
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185 LOG(ERROR) << "This RT-STRUCT contains a point that is off the "
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186 << "slice of its instance | "
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187 << "magnitude = " << magnitude << " | "
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188 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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189 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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190
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191 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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192 }
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193 }
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194 }
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195
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196 bool DicomStructureSet::Polygon::IsPointOnSliceIfAny(const Vector& v) const
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197 {
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198 if (hasSlice_)
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199 {
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200 double magnitude =
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201 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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202 bool onSlice = LinearAlgebra::IsNear(
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203 magnitude,
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204 projectionAlongNormal_,
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205 sliceThickness_ / 2.0 /* in mm */);
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206 if (!onSlice)
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207 {
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208 LOG(WARNING) << "This RT-STRUCT contains a point that is off the "
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209 << "slice of its instance | "
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210 << "magnitude = " << magnitude << " | "
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211 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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212 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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213 }
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214 return onSlice;
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215 }
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216 else
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217 {
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218 return true;
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219 }
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220 }
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221
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222 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
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223 {
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224 #if 1
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225 // BGO 2019-09-03
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226 if (IsPointOnSliceIfAny(v))
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227 {
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228 points_.push_back(v);
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229 }
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230 #else
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231 CheckPoint(v);
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232 points_.push_back(v);
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233 #endif
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234 }
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235
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236
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237 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
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238 {
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239 if (hasSlice_)
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240 {
122
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241 return true;
32
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242 }
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243 else
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244 {
122
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245 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
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246
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247 if (it == slices.end())
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248 {
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249 return false;
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250 }
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251 else
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252 {
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253 const CoordinateSystem3D& geometry = it->second.geometry_;
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254
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255 hasSlice_ = true;
131
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256 geometry_ = geometry;
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257 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
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258 sliceThickness_ = it->second.thickness_;
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259
131
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260 extent_.Reset();
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261
122
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262 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
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263 {
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264 if (IsPointOnSliceIfAny(*it))
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265 {
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266 double x, y;
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267 geometry.ProjectPoint2(x, y, *it);
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268 extent_.AddPoint(x, y);
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269 }
122
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270 }
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271 return true;
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272 }
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273 }
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274 }
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275
122
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276 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
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277 {
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278 bool isOpposite = false;
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279
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280 if (points_.empty() ||
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281 !hasSlice_ ||
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282 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
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283 {
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284 return false;
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285 }
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286
131
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287 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
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288
158
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289 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
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290 sliceThickness_ / 2.0));
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291 }
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292
131
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293 bool DicomStructureSet::Polygon::Project(double& x1,
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294 double& y1,
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295 double& x2,
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296 double& y2,
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297 const CoordinateSystem3D& slice) const
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298 {
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299 // TODO: optimize this method using a sweep-line algorithm for polygons
132
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300
131
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301 if (!hasSlice_ ||
132
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302 points_.size() <= 1)
131
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303 {
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304 return false;
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305 }
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diff changeset
306
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307 double x, y;
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308 geometry_.ProjectPoint2(x, y, slice.GetOrigin());
131
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diff changeset
309
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310 bool isOpposite;
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311 if (GeometryToolbox::IsParallelOrOpposite
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312 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
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313 {
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314 // plane is constant Y
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315
132
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316 if (y < extent_.GetY1() ||
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317 y > extent_.GetY2())
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318 {
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319 // The polygon does not intersect the input slice
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320 return false;
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321 }
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322
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323 bool isFirst = true;
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324 double xmin = std::numeric_limits<double>::infinity();
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325 double xmax = -std::numeric_limits<double>::infinity();
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326
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327 double prevX, prevY;
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328 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
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329
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330 for (size_t i = 0; i < points_.size(); i++)
131
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331 {
132
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332 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
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333 double curX, curY;
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334 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
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diff changeset
335
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diff changeset
336 // if prev* and cur* are on opposite sides of y, this means that the
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diff changeset
337 // segment intersects the plane.
132
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diff changeset
338 if ((prevY < y && curY > y) ||
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parents: 131
diff changeset
339 (prevY > y && curY < y))
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diff changeset
340 {
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diff changeset
341 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
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342 xmin = std::min(xmin, p);
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343 xmax = std::max(xmax, p);
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diff changeset
344 isFirst = false;
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diff changeset
345
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diff changeset
346 // xmin and xmax represent the extent of the rectangle along the
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diff changeset
347 // intersection between the plane and the polygon geometry
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diff changeset
348
132
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diff changeset
349 }
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parents: 131
diff changeset
350
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diff changeset
351 prevX = curX;
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352 prevY = curY;
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353 }
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parents: 131
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354
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355 // if NO segment intersects the plane
132
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diff changeset
356 if (isFirst)
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diff changeset
357 {
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diff changeset
358 return false;
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parents: 131
diff changeset
359 }
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parents: 131
diff changeset
360 else
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parents: 131
diff changeset
361 {
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diff changeset
362 // y is the plane y coord in the polygon geometry
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parents: 994
diff changeset
363 // xmin and xmax are ALSO expressed in the polygon geometry
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parents: 994
diff changeset
364
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parents: 994
diff changeset
365 // let's convert them to 3D world geometry...
132
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parents: 131
diff changeset
366 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131
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367 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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parents: 131
diff changeset
368 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131
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parents: 126
diff changeset
369 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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parents: 131
diff changeset
370
1000
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371 // then to the cutting plane geometry...
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parents: 1006
diff changeset
372 slice.ProjectPoint2(x1, y1, p1);
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parents: 1006
diff changeset
373 slice.ProjectPoint2(x2, y2, p2);
131
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parents: 126
diff changeset
374 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
375 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
376 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
377 else if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
378 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
379 {
1170
1644de437a7b fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
380 // plane is constant X => Sagittal view (remember that in the
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
381 // sagittal projection, the normal must be swapped)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
382
1170
1644de437a7b fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
383
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
384 /*
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
385 Please read the comments in the section above, by taking into account
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
386 the fact that, in this case, the plane has a constant X, not Y (in
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
387 polygon geometry_ coordinates)
1000
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parents: 994
diff changeset
388 */
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parents: 994
diff changeset
389
132
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
390 if (x < extent_.GetX1() ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
391 x > extent_.GetX2())
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
392 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
393 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
394 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
395
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
396 bool isFirst = true;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
397 double ymin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
398 double ymax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
399
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
400 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
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parents: 1006
diff changeset
401 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
402
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
403 for (size_t i = 0; i < points_.size(); i++)
131
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parents: 126
diff changeset
404 {
132
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parents: 131
diff changeset
405 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
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parents: 131
diff changeset
406 double curX, curY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
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parents: 1006
diff changeset
407 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
408
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
409 if ((prevX < x && curX > x) ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
410 (prevX > x && curX < x))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
411 {
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parents: 131
diff changeset
412 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
413 ymin = std::min(ymin, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
414 ymax = std::max(ymax, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
415 isFirst = false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
416 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
417
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
418 prevX = curX;
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
419 prevY = curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
420 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
421
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
422 if (isFirst)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
423 {
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
424 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
425 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
426 else
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
427 {
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parents: 131
diff changeset
428 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
131
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parents: 126
diff changeset
429 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
430 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
131
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parents: 126
diff changeset
431 sliceThickness_ / 2.0 * geometry_.GetNormal());
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parents: 126
diff changeset
432
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53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
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parents: 1006
diff changeset
433 slice.ProjectPoint2(x1, y1, p1);
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
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parents: 1006
diff changeset
434 slice.ProjectPoint2(x2, y2, p2);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
435
131
3e6163a53b16 optimization
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parents: 126
diff changeset
436 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
437 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
438 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
439 else
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
440 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
441 // Should not happen
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
442 return false;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
443 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
444 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
445
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
446
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit
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parents:
diff changeset
448 {
351ab0da0150 initial commit
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parents:
diff changeset
449 if (index >= structures_.size())
351ab0da0150 initial commit
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parents:
diff changeset
450 {
125
44fc253d4876 refactoring
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parents: 122
diff changeset
451 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
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parents:
diff changeset
452 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457
125
44fc253d4876 refactoring
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parents: 122
diff changeset
458 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 {
125
44fc253d4876 refactoring
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parents: 122
diff changeset
460 if (index >= structures_.size())
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
461 {
44fc253d4876 refactoring
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parents: 122
diff changeset
462 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
468 void DicomStructureSet::Setup(const OrthancPlugins::IDicomDataset& tags)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 {
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8e31b174ab26 removing using namespace
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parents: 516
diff changeset
470 OrthancPlugins::DicomDatasetReader reader(tags);
32
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parents: 31
diff changeset
471
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
472 size_t count, tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
473 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
474 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
475 tmp != count ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
476 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
477 tmp != count)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
482 structures_.resize(count);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
483 for (size_t i = 0; i < count; i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
484 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
485 structures_[i].interpretation_ = reader.GetStringValue
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8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
486 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
487 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
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parents: 121
diff changeset
488 "No interpretation");
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489
122
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
490 structures_[i].name_ = reader.GetStringValue
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
491 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
492 DICOM_TAG_ROI_NAME),
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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parents: 841
diff changeset
493 "No name");
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 Vector color;
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parents: 516
diff changeset
496 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
497 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
498 color.size() == 3)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
500 structures_[i].red_ = ConvertColor(color[0]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
501 structures_[i].green_ = ConvertColor(color[1]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
502 structures_[i].blue_ = ConvertColor(color[2]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
503 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
504 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
505 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
506 structures_[i].red_ = 255;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
507 structures_[i].green_ = 0;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
508 structures_[i].blue_ = 0;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
511 size_t countSlices;
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parents: 516
diff changeset
512 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
513 DICOM_TAG_CONTOUR_SEQUENCE)))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
514 {
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parents: 118
diff changeset
515 countSlices = 0;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
516 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517
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266e2b0b9abc better error reporting in DicomStructureSetLoader + fixed POST request logic
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parents: 804
diff changeset
518 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
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3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
519 << "\" with interpretation \"" << structures_[i].interpretation_
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
520 << "\" containing " << countSlices << " slices (color: "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
521 << static_cast<int>(structures_[i].red_) << ","
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
522 << static_cast<int>(structures_[i].green_) << ","
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
523 << static_cast<int>(structures_[i].blue_) << ")";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
525 // These temporary variables avoid allocating many vectors in the loop below
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
526 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
527 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
528 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
529
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
530 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
531 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
532 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
533
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
534 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
535 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
536 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
537
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
538 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
539 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
540 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
541 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
542 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
543
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
544 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
545 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
546 DICOM_TAG_CONTOUR_DATA);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
547
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
548 for (size_t j = 0; j < countSlices; j++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
550 unsigned int countPoints;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
552 countPointsPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
553 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
554 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
555 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
556 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
557
121
e66b2c757790 displaying rt-struct
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parents: 118
diff changeset
558 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
560 geometricTypePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
561 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
562 if (type != "CLOSED_PLANAR")
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 {
173
6b0411ac843a fix captain rt-struct
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parents: 159
diff changeset
564 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
6b0411ac843a fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
565 continue;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
568 size_t size;
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
569
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
570 imageSequencePath.SetPrefixIndex(1, j);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
571 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
572 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
573 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576
786
5aa728500586 optimizing constructor of DicomStructureSet
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parents: 738
diff changeset
577 referencedInstancePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
578 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
579
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
580 contourDataPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
581 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582
351ab0da0150 initial commit
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parents:
diff changeset
583 Vector points;
158
a053ca7fa5c6 LinearAlgebra toolbox
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parents: 137
diff changeset
584 if (!LinearAlgebra::ParseVector(points, slicesData) ||
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
585 points.size() != 3 * countPoints)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
590 // seen in real world
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
591 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
592 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
593 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
594 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
595
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
596 Polygon polygon(sopInstanceUid);
132
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
597 polygon.Reserve(countPoints);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
599 for (size_t k = 0; k < countPoints; k++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 Vector v(3);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 v[0] = points[3 * k];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 v[1] = points[3 * k + 1];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 v[2] = points[3 * k + 2];
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
605 polygon.AddPoint(v);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
614 #if ORTHANC_ENABLE_DCMTK == 1
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
615 DicomStructureSet::DicomStructureSet(Orthanc::ParsedDicomFile& instance)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
616 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
617 ParsedDicomDataset dataset(instance);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
618 Setup(dataset);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
619 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
620 #endif
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
621
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
622
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 const Structure& structure = GetStructure(index);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 Vector center;
158
a053ca7fa5c6 LinearAlgebra toolbox
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parents: 137
diff changeset
628 LinearAlgebra::AssignVector(center, 0, 0, 0);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629 if (structure.polygons_.empty())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
632 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 {
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
639 if (!polygon->GetPoints().empty())
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 {
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
641 center += polygon->GetPoints().front() / n;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648
351ab0da0150 initial commit
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parents:
diff changeset
649 const std::string& DicomStructureSet::GetStructureName(size_t index) const
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diff changeset
650 {
351ab0da0150 initial commit
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diff changeset
651 return GetStructure(index).name_;
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652 }
351ab0da0150 initial commit
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parents:
diff changeset
653
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parents:
diff changeset
654
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diff changeset
655 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
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parents:
diff changeset
656 {
351ab0da0150 initial commit
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diff changeset
657 return GetStructure(index).interpretation_;
351ab0da0150 initial commit
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parents:
diff changeset
658 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
660
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
661 Color DicomStructureSet::GetStructureColor(size_t index) const
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
662 {
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
663 const Structure& s = GetStructure(index);
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
664 return Color(s.red_, s.green_, s.blue_);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
665 }
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
666
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
667
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
668 void DicomStructureSet::GetStructureColor(uint8_t& red,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669 uint8_t& green,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 uint8_t& blue,
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
671 size_t index) const
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parents:
diff changeset
672 {
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parents:
diff changeset
673 const Structure& s = GetStructure(index);
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parents:
diff changeset
674 red = s.red_;
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
675 green = s.green_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
676 blue = s.blue_;
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parents:
diff changeset
677 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
678
351ab0da0150 initial commit
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diff changeset
679
122
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diff changeset
680 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
0
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parents:
diff changeset
681 {
351ab0da0150 initial commit
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parents:
diff changeset
682 for (Structures::const_iterator structure = structures_.begin();
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diff changeset
683 structure != structures_.end(); ++structure)
351ab0da0150 initial commit
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parents:
diff changeset
684 {
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parents:
diff changeset
685 for (Polygons::const_iterator polygon = structure->polygons_.begin();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
686 polygon != structure->polygons_.end(); ++polygon)
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parents:
diff changeset
687 {
122
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diff changeset
688 instances.insert(polygon->GetSopInstanceUid());
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diff changeset
689 }
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parents: 121
diff changeset
690 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
691 }
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parents: 121
diff changeset
692
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parents: 121
diff changeset
693
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diff changeset
694 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
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diff changeset
695 const std::string& seriesInstanceUid,
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parents: 121
diff changeset
696 const CoordinateSystem3D& geometry,
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diff changeset
697 double thickness)
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diff changeset
698 {
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parents: 121
diff changeset
699 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
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parents: 121
diff changeset
700 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
701 // This geometry is already known
956
a7351ad54960 Made IsContextLost automatically set the flag by checking with the emscripten
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parents: 949
diff changeset
702 LOG(ERROR) << "DicomStructureSet::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid;
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
703
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
704 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
122
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parents: 121
diff changeset
705 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
706 else
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
707 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
708 if (thickness < 0)
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parents: 121
diff changeset
709 {
e3433dabfb8d refactoring DicomStructureSet
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diff changeset
710 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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parents: 121
diff changeset
711 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
712
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
713 if (!referencedSlices_.empty())
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parents: 121
diff changeset
714 {
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diff changeset
715 const ReferencedSlice& reference = referencedSlices_.begin()->second;
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diff changeset
716
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parents: 121
diff changeset
717 if (reference.seriesInstanceUid_ != seriesInstanceUid)
0
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parents:
diff changeset
718 {
122
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diff changeset
719 LOG(ERROR) << "This RT-STRUCT refers to several different series";
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720 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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parents: 121
diff changeset
721 }
0
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parents:
diff changeset
722
122
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parents: 121
diff changeset
723 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
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parents: 121
diff changeset
724 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
725 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
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diff changeset
726 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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parents: 121
diff changeset
727 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
728 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
729
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
730 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
0
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parents:
diff changeset
731
131
3e6163a53b16 optimization
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parents: 126
diff changeset
732 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization
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parents: 126
diff changeset
733 structure != structures_.end(); ++structure)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
734 {
3e6163a53b16 optimization
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parents: 126
diff changeset
735 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
736 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
737 {
3e6163a53b16 optimization
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parents: 126
diff changeset
738 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
739 }
3e6163a53b16 optimization
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parents: 126
diff changeset
740 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
741 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
742 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
743
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
744
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
745 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
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parents: 121
diff changeset
746 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
747 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
748
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
749 double thickness = 1; // 1 mm by default
0
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parents:
diff changeset
750
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
751 std::string s;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
752 Vector v;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
753 if (dataset.LookupStringValue(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
754 LinearAlgebra::ParseVector(v, s) &&
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
755 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
756 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
757 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
758 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
759
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
760 std::string instance, series;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
761 if (dataset.LookupStringValue(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
762 dataset.LookupStringValue(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
763 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
764 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
765 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
766 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
767 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
768 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
769 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
770 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
771
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
772
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
773 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
774 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
775 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
776 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
777 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
778 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
779 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
780 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
781 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
782 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
783 std::string sopInstanceUid = polygon->GetSopInstanceUid();
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
784 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
785 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
786 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
787 << " missing information about referenced instance "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
788 << "(sopInstanceUid is empty!)";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
789 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
790 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
791 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
792 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
793 << " missing information about referenced instance "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
794 << "(sopInstanceUid = " << sopInstanceUid << ")";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
795 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
796 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
798 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
799 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
800 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
802
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
803 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
804 {
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
805 if (referencedSlices_.empty())
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
806 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
807 Vector v;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
808 LinearAlgebra::AssignVector(v, 0, 0, 1);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
809 return v;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
810 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
811 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
812 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
813 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
814 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
815 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
816
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
817 bool DicomStructureSet::ProjectStructure(
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
818 #if USE_BOOST_UNION_FOR_POLYGONS == 1
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
819 std::vector< std::vector<Point2D> >& polygons,
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
820 #else
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
821 std::vector< std::pair<Point2D, Point2D> >& segments,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
822 #endif
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
823 const Structure& structure,
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
824 const CoordinateSystem3D& sourceSlice) const
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
825 {
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
826 const CoordinateSystem3D slice = CoordinateSystem3D::NormalizeCuttingPlane(sourceSlice);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
827
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
828 #if USE_BOOST_UNION_FOR_POLYGONS == 1
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
829 polygons.clear();
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
830 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
831 segments.clear();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
832 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
833
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
834 Vector normal = GetNormal();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
835
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
836 bool isOpposite;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
837 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
838 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
839 // This is an axial projection
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
840
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
841 for (Polygons::const_iterator polygon = structure.polygons_.begin();
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
842 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
843 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
844 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
845 {
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
846 #if USE_BOOST_UNION_FOR_POLYGONS == 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
847 polygons.push_back(std::vector<Point2D>());
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
848
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
849 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
850 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
851 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
852 double x, y;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
853 slice.ProjectPoint2(x, y, *p);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
854 polygons.back().push_back(Point2D(x, y));
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
855 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
856 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
857 // we need to add all the segments corresponding to this polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
858 const std::vector<Vector>& points3D = polygon->GetPoints();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
859 if (points3D.size() >= 3)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
860 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
861 Point2D prev2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
862 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
863 Vector prev = points3D[0];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
864 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
865 slice.ProjectPoint2(prevX, prevY, prev);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
866 prev2D = Point2D(prevX, prevY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
867 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
868
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
869 size_t pointCount = points3D.size();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
870 for (size_t ipt = 1; ipt < pointCount; ++ipt)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
871 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
872 Vector next = points3D[ipt];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
873 double nextX, nextY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
874 slice.ProjectPoint2(nextX, nextY, next);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
875 Point2D next2D(nextX, nextY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
876 segments.push_back(std::pair<Point2D, Point2D>(prev2D, next2D));
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
877 prev2D = next2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
878 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
879 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
880 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
881 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
882 LOG(ERROR) << "Contour with less than 3 points!";
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
883 // !!!
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
884 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
885 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
886 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
887 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
888
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
889 return true;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
890 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
891 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) ||
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
892 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
893 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
894 #if 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
895 // Sagittal or coronal projection
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
896
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
897 #if USE_BOOST_UNION_FOR_POLYGONS == 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
898 std::vector<BoostPolygon> projected;
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
899
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
900 for (Polygons::const_iterator polygon = structure.polygons_.begin();
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
901 polygon != structure.polygons_.end(); ++polygon)
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
902 {
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
903 double x1, y1, x2, y2;
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
904
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
905 if (polygon->Project(x1, y1, x2, y2, slice))
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
906 {
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
907 projected.push_back(CreateRectangle(x1, y1, x2, y2));
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
908 }
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
909 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
910 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
911 // this will contain the intersection of the polygon slab with
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
912 // the cutting plane, projected on the cutting plane coord system
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
913 // (that yields a rectangle) + the Z coordinate of the polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
914 // (this is required to group polygons with the same Z later)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
915 std::vector<std::pair<RtStructRectangleInSlab, double> > projected;
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
916
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
917 for (Polygons::const_iterator polygon = structure.polygons_.begin();
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
918 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
919 {
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
920 double x1, y1, x2, y2;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
921
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
922 if (polygon->Project(x1, y1, x2, y2, slice))
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
923 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
924 double curZ = polygon->GetGeometryOrigin()[2];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
925
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
926 // x1,y1 and x2,y2 are in "slice" coordinates (the cutting plane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
927 // geometry)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
928 projected.push_back(std::make_pair(CreateRectangle(
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
929 static_cast<float>(x1),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
930 static_cast<float>(y1),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
931 static_cast<float>(x2),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
932 static_cast<float>(y2)),curZ));
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
933 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
934 }
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
935 #endif
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
936
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
937 #if USE_BOOST_UNION_FOR_POLYGONS != 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
938 // projected contains a set of rectangles specified by two opposite
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
939 // corners (x1,y1,x2,y2)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
940 // we need to merge them
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
941 // each slab yields ONE polygon!
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
942
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
943 // we need to sorted all the rectangles that originate from the same Z
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
944 // into lanes. To make sure they are grouped together in the array, we
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
945 // sort it.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
946 std::sort(projected.begin(), projected.end(), CompareRectanglesForProjection);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
947
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
948 std::vector<RtStructRectanglesInSlab> rectanglesForEachSlab;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
949 rectanglesForEachSlab.reserve(projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
950
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
951 double curZ = 0;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
952 for (size_t i = 0; i < projected.size(); ++i)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
953 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
954 #if 0
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
955 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
956 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
957 if (i == 0)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
958 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
959 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
960 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
961 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
962 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
963 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
964 // this check is needed to prevent creating a new slab if
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
965 // the new polygon is at the same Z coord than last one
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
966 if (!LinearAlgebra::IsNear(curZ, projected[i].second))
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
967 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
968 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
969 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
970 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
971 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
972 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
973
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
974 rectanglesForEachSlab.back().push_back(projected[i].first);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
975
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
976 // as long as they have the same y, we should put them into the same lane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
977 // BUT in Sebastien's code, there is only one polygon per lane.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
978
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
979 //std::cout << "rect: xmin = " << rect.xmin << " xmax = " << rect.xmax << " ymin = " << rect.ymin << " ymax = " << rect.ymax << std::endl;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
980 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
981
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
982 // now we need to sort the slabs in increasing Y order (see ConvertListOfSlabsToSegments)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
983 std::sort(rectanglesForEachSlab.begin(), rectanglesForEachSlab.end(), CompareSlabsY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
984
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
985 ConvertListOfSlabsToSegments(segments, rectanglesForEachSlab, projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
986 #else
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
987 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
988 Union(merged, projected);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
989
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
990 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
991 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
992 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
993 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
994
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
995 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
996 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
997 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
998 polygons[i][j] = Point2D(outer[j].x(), outer[j].y());
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
999 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
1000 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
1001 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
1002
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1003 #else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1004 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1005 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1006 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1007 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1008 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1009 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
1010 std::vector<Point2D> p(4);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1011 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1012 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1013 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1014 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1015 polygons.push_back(p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1016 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1017 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1018 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1019
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
1020 return true;
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1021 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1022 else
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1023 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1024 return false;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1025 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1026 }
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1027
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1028
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1029 void DicomStructureSet::ProjectOntoLayer(PolylineSceneLayer& layer,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1030 const CoordinateSystem3D& plane,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1031 size_t structureIndex,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1032 const Color& color) const
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1033 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1034 #if USE_BOOST_UNION_FOR_POLYGONS == 1
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1035 std::vector< std::vector<Point2D> > polygons;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1036 if (ProjectStructure(polygons, structureIndex, plane))
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1037 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1038 for (size_t j = 0; j < polygons.size(); j++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1039 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1040 std::vector<ScenePoint2D> chain;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1041 chain.reserve(polygons[j].size());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1042
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1043 for (size_t k = 0; k < polygons[j].size(); k++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1044 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1045 chain.push_back(ScenePoint2D(polygons[j][k].x, polygons[j][k].y));
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1046 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1047
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1048 layer.AddChain(chain, true, color.GetRed(), color.GetGreen(), color.GetBlue());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1049 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1050 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1051
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1052 #else
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1053 std::vector< std::pair<Point2D, Point2D> > segments;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1054
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1055 if (ProjectStructure(segments, structureIndex, plane))
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1056 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1057 for (size_t j = 0; j < segments.size(); j++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1058 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1059 std::vector<ScenePoint2D> chain(2);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1060 chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1061 chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1062 layer.AddChain(chain, false, color.GetRed(), color.GetGreen(), color.GetBlue());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1063 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1064 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1065 #endif
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1066 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1067 }