annotate Framework/Toolbox/DicomStructureSet.cpp @ 981:c20dbaab360c

Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
author Benjamin Golinvaux <bgo@osimis.io>
date Fri, 06 Sep 2019 09:38:18 +0200
parents 13e078adfb94
children 4c9b4c4de814
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
439
b70e9be013e4 preparing for 2019
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
10 * the License, or (at your option) any later version.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
15 * Affero General Public License for more details.
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
16 *
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "DicomStructureSet.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
159
0a73d76333db populating LinearAlgebra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 158
diff changeset
24 #include "../Toolbox/GeometryToolbox.h"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
26 #include <Core/Logging.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
27 #include <Core/OrthancException.h>
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
28 #include <Core/Toolbox.h>
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
29 #include <Plugins/Samples/Common/FullOrthancDataset.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
30 #include <Plugins/Samples/Common/DicomDatasetReader.h>
113
2eca030792aa using the Orthanc Framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 110
diff changeset
31
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
32 #include <limits>
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 #include <stdio.h>
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
34 #include <boost/geometry.hpp>
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
35 #include <boost/geometry/geometries/point_xy.hpp>
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
36 #include <boost/geometry/geometries/polygon.hpp>
137
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
37 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
38
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
39 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
40 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
41 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
42
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
43
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
44 static void Union(BoostMultiPolygon& output,
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
45 std::vector<BoostPolygon>& input)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
46 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
47 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
48 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
49 boost::geometry::correct(input[i]);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
50 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
51
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
52 if (input.size() == 0)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
53 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
54 output.clear();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
55 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
56 else if (input.size() == 1)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
57 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
58 output.resize(1);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
59 output[0] = input[0];
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
60 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
61 else
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
62 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
63 boost::geometry::union_(input[0], input[1], output);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
64
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
65 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
66 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
67 BoostMultiPolygon tmp;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
68 boost::geometry::union_(output, input[i], tmp);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
69 output = tmp;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
70 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
71 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
72 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
73
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
74
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
75 static BoostPolygon CreateRectangle(float x1, float y1,
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
76 float x2, float y2)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
77 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
78 BoostPolygon r;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
79 boost::geometry::append(r, BoostPoint(x1, y1));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
80 boost::geometry::append(r, BoostPoint(x1, y2));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
81 boost::geometry::append(r, BoostPoint(x2, y2));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
82 boost::geometry::append(r, BoostPoint(x2, y1));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
83 return r;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
84 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
85
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
86
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
90 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
91 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
92 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
93 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
94 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
95 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
96 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
97 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
98 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
99 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
100 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
101 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 static uint8_t ConvertColor(double v)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 if (v < 0)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 return 0;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 else if (v >= 255)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 return 255;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 else
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 return static_cast<uint8_t>(v);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
121 static bool ParseVector(Vector& target,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
122 const OrthancPlugins::IDicomDataset& dataset,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
123 const OrthancPlugins::DicomPath& tag)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 {
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
125 std::string value;
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
126 return (dataset.GetStringValue(value, tag) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
127 LinearAlgebra::ParseVector(target, value));
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
128 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
130 void DicomStructureSet::Polygon::CheckPointIsOnSlice(const Vector& v) const
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
131 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
132 if (hasSlice_)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
134 double magnitude =
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
135 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
136 if(!LinearAlgebra::IsNear(
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
137 magnitude,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
138 projectionAlongNormal_,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
139 sliceThickness_ / 2.0 /* in mm */ ))
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
140 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
141 LOG(ERROR) << "This RT-STRUCT contains a point that is off the "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
142 << "slice of its instance | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
143 << "magnitude = " << magnitude << " | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
144 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
145 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
146
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
147 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
148 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
150 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
152 bool DicomStructureSet::Polygon::IsPointOnSlice(const Vector& v) const
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
153 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
154 if (hasSlice_)
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
155 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
156 double magnitude =
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
157 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
158 bool onSlice = LinearAlgebra::IsNear(
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
159 magnitude,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
160 projectionAlongNormal_,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
161 sliceThickness_ / 2.0 /* in mm */);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
162 if (!onSlice)
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
163 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
164 LOG(WARNING) << "This RT-STRUCT contains a point that is off the "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
165 << "slice of its instance | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
166 << "magnitude = " << magnitude << " | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
167 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
168 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
169 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
170 return onSlice;
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
171 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
172 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
173 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
174 return false;
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
175 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
176 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
178 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
179 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
180 #if 1
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
181 // BGO 2019-09-03
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
182 if (IsPointOnSlice(v))
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
183 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
184 points_.push_back(v);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
185 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
186 #else
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
187 CheckPoint(v);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
188 points_.push_back(v);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
189 #endif
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
190 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
191
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
192
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
193 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
194 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
195 if (hasSlice_)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
197 return true;
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
198 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
199 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
200 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
201 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
202
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
203 if (it == slices.end())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
204 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
205 return false;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
206 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
207 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
208 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
209 const CoordinateSystem3D& geometry = it->second.geometry_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
210
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
211 hasSlice_ = true;
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
212 geometry_ = geometry;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
213 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
214 sliceThickness_ = it->second.thickness_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
216 extent_.Reset();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
217
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
218 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
219 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
220 if (IsPointOnSlice(*it))
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
221 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
222 double x, y;
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
223 geometry.ProjectPoint(x, y, *it);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
224 extent_.AddPoint(x, y);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
225 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
226 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
227 return true;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
228 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
232 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
233 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
234 bool isOpposite = false;
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
235
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
236 if (points_.empty() ||
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
237 !hasSlice_ ||
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
238 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
239 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
240 return false;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
241 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
242
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
243 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
244
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
245 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
246 sliceThickness_ / 2.0));
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
247 }
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
248
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
249 bool DicomStructureSet::Polygon::Project(double& x1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
250 double& y1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
251 double& x2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
252 double& y2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
253 const CoordinateSystem3D& slice) const
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
254 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
255 // TODO: optimize this method using a sweep-line algorithm for polygons
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
256
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
257 if (!hasSlice_ ||
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
258 points_.size() <= 1)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
259 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
260 return false;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
261 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
262
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
263 double x, y;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
264 geometry_.ProjectPoint(x, y, slice.GetOrigin());
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
265
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
266 bool isOpposite;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
267 if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
268 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
269 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
270 if (y < extent_.GetY1() ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
271 y > extent_.GetY2())
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
272 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
273 // The polygon does not intersect the input slice
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
274 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
275 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
276
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
277 bool isFirst = true;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
278 double xmin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
279 double xmax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
280
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
281 double prevX, prevY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
282 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
283
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
284 for (size_t i = 0; i < points_.size(); i++)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
285 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
286 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
287 double curX, curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
288 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
289
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
290 if ((prevY < y && curY > y) ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
291 (prevY > y && curY < y))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
292 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
293 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
294 xmin = std::min(xmin, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
295 xmax = std::max(xmax, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
296 isFirst = false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
297 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
298
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
299 prevX = curX;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
300 prevY = curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
301 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
302
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
303 if (isFirst)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
304 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
305 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
306 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
307 else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
308 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
309 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
310 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
311 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
312 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
313
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
314 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
315 slice.ProjectPoint(x2, y2, p2);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
316 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
317 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
318 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
319 else if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
320 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
321 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
322 if (x < extent_.GetX1() ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
323 x > extent_.GetX2())
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
324 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
325 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
326 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
327
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
328 bool isFirst = true;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
329 double ymin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
330 double ymax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
331
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
332 double prevX, prevY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
333 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
334
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
335 for (size_t i = 0; i < points_.size(); i++)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
336 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
337 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
338 double curX, curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
339 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
340
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
341 if ((prevX < x && curX > x) ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
342 (prevX > x && curX < x))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
343 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
344 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
345 ymin = std::min(ymin, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
346 ymax = std::max(ymax, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
347 isFirst = false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
348 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
349
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
350 prevX = curX;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
351 prevY = curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
352 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
353
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
354 if (isFirst)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
355 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
356 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
357 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
358 else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
359 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
360 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
361 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
362 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
363 sliceThickness_ / 2.0 * geometry_.GetNormal());
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
364
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
365 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
366 slice.ProjectPoint(x2, y2, p2);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
367
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
368 // TODO WHY THIS???
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
369 y1 = -y1;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
370 y2 = -y2;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
371
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
372 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
373 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
374 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
375 else
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
376 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
377 // Should not happen
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
378 return false;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
379 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
380 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
381
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
382
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 if (index >= structures_.size())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
387 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
394 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 {
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
396 if (index >= structures_.size())
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
397 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
398 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
404 DicomStructureSet::DicomStructureSet(const OrthancPlugins::FullOrthancDataset& tags)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 {
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
406 OrthancPlugins::DicomDatasetReader reader(tags);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
407
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
408 size_t count, tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
409 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
410 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
411 tmp != count ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
412 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
413 tmp != count)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
418 structures_.resize(count);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
419 for (size_t i = 0; i < count; i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
420 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
421 structures_[i].interpretation_ = reader.GetStringValue
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
422 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
423 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
424 "No interpretation");
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
426 structures_[i].name_ = reader.GetStringValue
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
427 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
428 DICOM_TAG_ROI_NAME),
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 841
diff changeset
429 "No name");
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 Vector color;
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
432 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
433 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
434 color.size() == 3)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
436 structures_[i].red_ = ConvertColor(color[0]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
437 structures_[i].green_ = ConvertColor(color[1]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
438 structures_[i].blue_ = ConvertColor(color[2]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
439 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
440 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
441 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
442 structures_[i].red_ = 255;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
443 structures_[i].green_ = 0;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
444 structures_[i].blue_ = 0;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
447 size_t countSlices;
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
448 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
449 DICOM_TAG_CONTOUR_SEQUENCE)))
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
450 {
121
e66b2c757790 displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
451 countSlices = 0;
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
452 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
841
266e2b0b9abc better error reporting in DicomStructureSetLoader + fixed POST request logic
Benjamin Golinvaux <bgo@osimis.io>
parents: 804
diff changeset
454 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 << "\" with interpretation \"" << structures_[i].interpretation_
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
456 << "\" containing " << countSlices << " slices (color: "
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 << static_cast<int>(structures_[i].red_) << ","
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 << static_cast<int>(structures_[i].green_) << ","
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 << static_cast<int>(structures_[i].blue_) << ")";
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
461 // These temporary variables avoid allocating many vectors in the loop below
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
462 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
463 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
464 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
465
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
466 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
467 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
468 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
469
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
470 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
471 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
472 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
473
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
474 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
475 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
476 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
477 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
478 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
479
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
480 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
481 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
482 DICOM_TAG_CONTOUR_DATA);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
483
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
484 for (size_t j = 0; j < countSlices; j++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
486 unsigned int countPoints;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
488 countPointsPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
489 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
490 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
491 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
492 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
493
121
e66b2c757790 displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
494 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
496 geometricTypePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
497 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
498 if (type != "CLOSED_PLANAR")
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 {
173
6b0411ac843a fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
500 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
6b0411ac843a fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
501 continue;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
504 size_t size;
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
505
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
506 imageSequencePath.SetPrefixIndex(1, j);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
507 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
508 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
509 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
513 referencedInstancePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
514 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
515
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
516 contourDataPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
517 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 Vector points;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
520 if (!LinearAlgebra::ParseVector(points, slicesData) ||
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
521 points.size() != 3 * countPoints)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
526 // seen in real world
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
527 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
528 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
529 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
530 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
531
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
532 Polygon polygon(sopInstanceUid);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
533 polygon.Reserve(countPoints);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
535 for (size_t k = 0; k < countPoints; k++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
536 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537 Vector v(3);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 v[0] = points[3 * k];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539 v[1] = points[3 * k + 1];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540 v[2] = points[3 * k + 2];
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
541 polygon.AddPoint(v);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
544 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 const Structure& structure = GetStructure(index);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 Vector center;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
555 LinearAlgebra::AssignVector(center, 0, 0, 0);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 if (structure.polygons_.empty())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
562
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
566 if (!polygon->GetPoints().empty())
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
568 center += polygon->GetPoints().front() / n;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 const std::string& DicomStructureSet::GetStructureName(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 return GetStructure(index).name_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 return GetStructure(index).interpretation_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
588 Color DicomStructureSet::GetStructureColor(size_t index) const
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
589 {
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
590 const Structure& s = GetStructure(index);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
591 return Color(s.red_, s.green_, s.blue_);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
592 }
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
593
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
594
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 void DicomStructureSet::GetStructureColor(uint8_t& red,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 uint8_t& green,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 uint8_t& blue,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 const Structure& s = GetStructure(index);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 red = s.red_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 green = s.green_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 blue = s.blue_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
607 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 for (Structures::const_iterator structure = structures_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 structure != structures_.end(); ++structure)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 for (Polygons::const_iterator polygon = structure->polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 polygon != structure->polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
615 instances.insert(polygon->GetSopInstanceUid());
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
616 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
617 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
618 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
619
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
620
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
621 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
622 const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
623 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
624 double thickness)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
625 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
626 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
627 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
628 // This geometry is already known
956
a7351ad54960 Made IsContextLost automatically set the flag by checking with the emscripten
Benjamin Golinvaux <bgo@osimis.io>
parents: 949
diff changeset
629 LOG(ERROR) << "DicomStructureSet::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid;
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
630
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
631 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
632 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
633 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
634 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
635 if (thickness < 0)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
636 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
637 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
638 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
639
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
640 if (!referencedSlices_.empty())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
641 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
642 const ReferencedSlice& reference = referencedSlices_.begin()->second;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
643
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
644 if (reference.seriesInstanceUid_ != seriesInstanceUid)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
646 LOG(ERROR) << "This RT-STRUCT refers to several different series";
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
647 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
648 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
649
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
650 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
651 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
652 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
653 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
654 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
655 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
656
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
657 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
659 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
660 structure != structures_.end(); ++structure)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
661 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
662 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
663 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
664 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
665 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
666 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
667 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
668 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
669 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
670
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
671
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
672 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
673 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
674 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
675
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
676 double thickness = 1; // 1 mm by default
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
677
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
678 std::string s;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
679 Vector v;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
680 if (dataset.CopyToString(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
681 LinearAlgebra::ParseVector(v, s) &&
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
682 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
683 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
684 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
685 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
686
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
687 std::string instance, series;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
688 if (dataset.CopyToString(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
689 dataset.CopyToString(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
690 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
691 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
692 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
693 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
694 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
695 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
696 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
697 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
698
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
699
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
700 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
701 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
702 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
703 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
704 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
705 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
706 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
707 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
708 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
709 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
710 std::string sopInstanceUid = polygon->GetSopInstanceUid();
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
711 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
712 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
713 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
714 << " missing information about referenced instance "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
715 << "(sopInstanceUid is empty!)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
716 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
717 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
718 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
719 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
720 << " missing information about referenced instance "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
721 << "(sopInstanceUid = " << sopInstanceUid << ")";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
722 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
723 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
725 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
726 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
727 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
728
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
729
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
730 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
731 {
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
732 if (referencedSlices_.empty())
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
733 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
734 Vector v;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
735 LinearAlgebra::AssignVector(v, 0, 0, 1);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
736 return v;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
737 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
738 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
739 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
740 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
741 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
742 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
743
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
744
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
745 bool DicomStructureSet::ProjectStructure(std::vector< std::vector<PolygonPoint2D> >& polygons,
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
746 const Structure& structure,
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
747 const CoordinateSystem3D& slice) const
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
748 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
749 polygons.clear();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
750
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
751 Vector normal = GetNormal();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
752
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
753 bool isOpposite;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
754 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
755 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
756 // This is an axial projection
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
757
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
758 for (Polygons::const_iterator polygon = structure.polygons_.begin();
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
759 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
760 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
761 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
762 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
763 polygons.push_back(std::vector<PolygonPoint2D>());
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
764
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
765 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
766 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
767 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
768 double x, y;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
769 slice.ProjectPoint(x, y, *p);
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
770 polygons.back().push_back(std::make_pair(x, y));
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
771 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
772 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
773 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
774
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
775 return true;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
776 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
777 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) ||
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
778 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
779 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
780 #if 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
781 // Sagittal or coronal projection
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
782 std::vector<BoostPolygon> projected;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
783
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
784 for (Polygons::const_iterator polygon = structure.polygons_.begin();
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
785 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
786 {
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
787 double x1, y1, x2, y2;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
788 if (polygon->Project(x1, y1, x2, y2, slice))
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
789 {
516
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
790 projected.push_back(CreateRectangle(
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
791 static_cast<float>(x1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
792 static_cast<float>(y1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
793 static_cast<float>(x2),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
794 static_cast<float>(y2)));
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
795 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
796 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
797
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
798 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
799 Union(merged, projected);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
800
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
801 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
802 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
803 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
804 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
805
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
806 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
807 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
808 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
809 polygons[i][j] = std::make_pair(outer[j].x(), outer[j].y());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
810 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
811 }
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
812 #else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
813 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
814 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
815 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
816 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
817 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
818 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
819 std::vector<PolygonPoint2D> p(4);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
820 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
821 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
822 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
823 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
824 polygons.push_back(p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
825 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
826 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
827 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
828
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
829 return true;
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
830 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
831 else
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
832 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
833 return false;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
834 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
836 }