orthanc-stone: Framework/Toolbox/DicomStructureSet.cpp annotate

annotate Framework/Toolbox/DicomStructureSet.cpp @ 137:a30ff4866a1e wasm

fix

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Tue, 16 Jan 2018 13:31:19 +0100
parents	e2fe9352f240
children	a053ca7fa5c6

rev	line source
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2 * Stone of Orthanc
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 * Department, University Hospital of Liege, Belgium
135 e2fe9352f240 upgrade to year 2018 Sebastien Jodogne <s.jodogne@gmail.com> parents: 132 diff changeset	5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 *
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * This program is free software: you can redistribute it and/or
47 28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	10 * the License, or (at your option) any later version.
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 *
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47 28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	15 * Affero General Public License for more details.
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	16 *
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	17 * You should have received a copy of the GNU Affero General Public License
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 **/
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 #include "DicomStructureSet.h"
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
35 6465fbd23bce move Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	24 #include "../Toolbox/MessagingToolbox.h"
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	25
113 2eca030792aa using the Orthanc Framework Sebastien Jodogne <s.jodogne@gmail.com> parents: 110 diff changeset	26 #include <Core/Logging.h>
2eca030792aa using the Orthanc Framework Sebastien Jodogne <s.jodogne@gmail.com> parents: 110 diff changeset	27 #include <Core/OrthancException.h>
2eca030792aa using the Orthanc Framework Sebastien Jodogne <s.jodogne@gmail.com> parents: 110 diff changeset	28 #include <Plugins/Samples/Common/FullOrthancDataset.h>
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	29 #include <Plugins/Samples/Common/DicomDatasetReader.h>
113 2eca030792aa using the Orthanc Framework Sebastien Jodogne <s.jodogne@gmail.com> parents: 110 diff changeset	30
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	31 #include <limits>
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	32 #include <stdio.h>
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	33 #include <boost/lexical_cast.hpp>
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	34 #include <boost/geometry.hpp>
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	35 #include <boost/geometry/geometries/point_xy.hpp>
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	36 #include <boost/geometry/geometries/polygon.hpp>
137 a30ff4866a1e fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 135 diff changeset	37 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	38
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	39 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	40 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	41 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	42
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	43
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	44 static void Union(BoostMultiPolygon& output,
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	45 std::vector<BoostPolygon>& input)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	46 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	47 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	48 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	49 boost::geometry::correct(input[i]);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	50 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	51
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	52 if (input.size() == 0)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	53 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	54 output.clear();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	55 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	56 else if (input.size() == 1)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	57 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	58 output.resize(1);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	59 output[0] = input[0];
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	60 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	61 else
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	62 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	63 boost::geometry::union_(input[0], input[1], output);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	64
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	65 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	66 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	67 BoostMultiPolygon tmp;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	68 boost::geometry::union_(output, input[i], tmp);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	69 output = tmp;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	70 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	71 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	72 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	73
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	74
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	75 static BoostPolygon CreateRectangle(float x1, float y1,
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	76 float x2, float y2)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	77 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	78 BoostPolygon r;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	79 boost::geometry::append(r, BoostPoint(x1, y1));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	80 boost::geometry::append(r, BoostPoint(x1, y2));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	81 boost::geometry::append(r, BoostPoint(x2, y2));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	82 boost::geometry::append(r, BoostPoint(x2, y1));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	83 return r;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	84 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	85
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	86
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 namespace OrthancStone
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	90 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	91 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	92 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	93 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	94 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	95 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	96 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	97 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	98 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	99 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	100 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	101 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104 static uint8_t ConvertColor(double v)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 if (v < 0)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 return 0;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 else if (v >= 255)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112 return 255;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114 else
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 return static_cast<uint8_t>(v);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	121 static bool ParseVector(Vector& target,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	122 const OrthancPlugins::IDicomDataset& dataset,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	123 const OrthancPlugins::DicomPath& tag)
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	124 {
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	125 std::string value;
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	126 return (dataset.GetStringValue(value, tag) &&
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	127 GeometryToolbox::ParseVector(target, value));
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	128 }
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	129
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	130
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	131 void DicomStructureSet::Polygon::CheckPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	132 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	133 if (hasSlice_)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 {
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	135 if (!GeometryToolbox::IsNear(GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal()),
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	136 projectionAlongNormal_,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	137 sliceThickness_ / 2.0 /* in mm */))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	138 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	139 LOG(ERROR) << "This RT-STRUCT contains a point that is off the slice of its instance";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	140 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	141 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	142 }
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	143 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	144
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	145
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	146 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	147 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	148 CheckPoint(v);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	149 points_.push_back(v);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	150 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	151
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	152
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	153 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	154 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	155 if (hasSlice_)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	156 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	157 return true;
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	158 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	159 else
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	160 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	161 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	162
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	163 if (it == slices.end())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	164 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	165 return false;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	166 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	167 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	168 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	169 const CoordinateSystem3D& geometry = it->second.geometry_;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	170
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	171 hasSlice_ = true;
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	172 geometry_ = geometry;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	173 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	174 sliceThickness_ = it->second.thickness_;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	175
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	176 extent_.Reset();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	177
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	178 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	179 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	180 CheckPoint(*it);
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	181
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	182 double x, y;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	183 geometry.ProjectPoint(x, y, *it);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	184 extent_.AddPoint(x, y);
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	185 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	186
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	187 return true;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	188 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	189 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	190 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	191
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	192
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	193 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	194 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	195 bool isOpposite;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	196
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	197 if (points_.empty() \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	198 !hasSlice_ \|\|
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	199 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	200 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	201 return false;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	202 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	203
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	204 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	205
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	206 return (GeometryToolbox::IsNear(d, projectionAlongNormal_,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	207 sliceThickness_ / 2.0));
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	208 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	209
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	210
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	211 bool DicomStructureSet::Polygon::Project(double& x1,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	212 double& y1,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	213 double& x2,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	214 double& y2,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	215 const CoordinateSystem3D& slice) const
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	216 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	217 // TODO Optimize this method using a sweep-line algorithm for polygons
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	218
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	219 if (!hasSlice_ \|\|
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	220 points_.size() <= 1)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	221 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	222 return false;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	223 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	224
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	225 double x, y;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	226 geometry_.ProjectPoint(x, y, slice.GetOrigin());
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	227
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	228 bool isOpposite;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	229 if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	230 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	231 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	232 if (y < extent_.GetY1() \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	233 y > extent_.GetY2())
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	234 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	235 // The polygon does not intersect the input slice
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	236 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	237 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	238
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	239 bool isFirst = true;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	240 double xmin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	241 double xmax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	242
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	243 double prevX, prevY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	244 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	245
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	246 for (size_t i = 0; i < points_.size(); i++)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	247 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	248 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	249 double curX, curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	250 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	251
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	252 if ((prevY < y && curY > y) \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	253 (prevY > y && curY < y))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	254 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	255 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	256 xmin = std::min(xmin, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	257 xmax = std::max(xmax, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	258 isFirst = false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	259 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	260
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	261 prevX = curX;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	262 prevY = curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	263 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	264
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	265 if (isFirst)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	266 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	267 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	268 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	269 else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	270 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	271 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	272 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	273 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	274 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	275
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	276 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	277 slice.ProjectPoint(x2, y2, p2);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	278 return true;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	279 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	280 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	281 else if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	282 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	283 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	284 if (x < extent_.GetX1() \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	285 x > extent_.GetX2())
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	286 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	287 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	288 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	289
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	290 bool isFirst = true;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	291 double ymin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	292 double ymax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	293
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	294 double prevX, prevY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	295 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	296
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	297 for (size_t i = 0; i < points_.size(); i++)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	298 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	299 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	300 double curX, curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	301 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	302
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	303 if ((prevX < x && curX > x) \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	304 (prevX > x && curX < x))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	305 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	306 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	307 ymin = std::min(ymin, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	308 ymax = std::max(ymax, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	309 isFirst = false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	310 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	311
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	312 prevX = curX;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	313 prevY = curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	314 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	315
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	316 if (isFirst)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	317 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	318 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	319 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	320 else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	321 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	322 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	323 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	324 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	325 sliceThickness_ / 2.0 * geometry_.GetNormal());
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	326
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	327 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	328 slice.ProjectPoint(x2, y2, p2);
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	329
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	330 // TODO WHY THIS???
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	331 y1 = -y1;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	332 y2 = -y2;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	333
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	334 return true;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	335 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	336 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	337 else
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	338 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	339 // Should not happen
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	340 return false;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	341 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	342 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	343
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	344
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	345 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	346 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	347 if (index >= structures_.size())
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	348 {
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	349 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	350 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	351
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	352 return structures_[index];
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	353 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	354
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	355
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	356 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	357 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	358 if (index >= structures_.size())
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	359 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	360 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	361 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	362
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	363 return structures_[index];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	364 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	365
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	366
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	367 DicomStructureSet::DicomStructureSet(const OrthancPlugins::FullOrthancDataset& tags)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	368 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	369 using namespace OrthancPlugins;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	370
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	371 DicomDatasetReader reader(tags);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	372
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	373 size_t count, tmp;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	374 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	375 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	376 tmp != count \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	377 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	378 tmp != count)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	379 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	380 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	381 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	382
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	383 structures_.resize(count);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	384 for (size_t i = 0; i < count; i++)
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	385 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	386 structures_[i].interpretation_ = reader.GetStringValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	387 (DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	388 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	389 "No interpretation");
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	390
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	391 structures_[i].name_ = reader.GetStringValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	392 (DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	393 DICOM_TAG_ROI_NAME),
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	394 "No interpretation");
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	395
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	396 Vector color;
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	397 if (ParseVector(color, tags, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	398 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	399 color.size() == 3)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	400 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	401 structures_[i].red_ = ConvertColor(color[0]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	402 structures_[i].green_ = ConvertColor(color[1]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	403 structures_[i].blue_ = ConvertColor(color[2]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	404 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	405 else
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	406 {
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	407 structures_[i].red_ = 255;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	408 structures_[i].green_ = 0;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	409 structures_[i].blue_ = 0;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	410 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	411
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	412 size_t countSlices;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	413 if (!tags.GetSequenceSize(countSlices, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	414 DICOM_TAG_CONTOUR_SEQUENCE)))
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	415 {
121 e66b2c757790 displaying rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 118 diff changeset	416 countSlices = 0;
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	417 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	418
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	419 LOG(WARNING) << "New RT structure: \"" << structures_[i].name_
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	420 << "\" with interpretation \"" << structures_[i].interpretation_
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	421 << "\" containing " << countSlices << " slices (color: "
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	422 << static_cast<int>(structures_[i].red_) << ","
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	423 << static_cast<int>(structures_[i].green_) << ","
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	424 << static_cast<int>(structures_[i].blue_) << ")";
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	425
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	426 for (size_t j = 0; j < countSlices; j++)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	427 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	428 unsigned int countPoints;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	429
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	430 if (!reader.GetUnsignedIntegerValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	431 (countPoints, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	432 DICOM_TAG_CONTOUR_SEQUENCE, j,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	433 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS)))
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	434 {
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	435 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	436 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	437
121 e66b2c757790 displaying rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 118 diff changeset	438 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	439
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	440 std::string type = reader.GetMandatoryStringValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	441 (DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	442 DICOM_TAG_CONTOUR_SEQUENCE, j,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	443 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE));
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	444 if (type != "CLOSED_PLANAR")
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	445 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	446 LOG(ERROR) << "Cannot handle contour with geometry type: " << type;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	447 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	448 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	449
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	450 size_t size;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	451 if (!tags.GetSequenceSize(size, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	452 DICOM_TAG_CONTOUR_SEQUENCE, j,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	453 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE)) \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	454 size != 1)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	455 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	456 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	457 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	458
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	459 std::string sopInstanceUid = reader.GetMandatoryStringValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	460 (DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	461 DICOM_TAG_CONTOUR_SEQUENCE, j,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	462 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	463 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID));
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	464
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	465 std::string slicesData = reader.GetMandatoryStringValue
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	466 (DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	467 DICOM_TAG_CONTOUR_SEQUENCE, j,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	468 DICOM_TAG_CONTOUR_DATA));
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	469
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	470 Vector points;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	471 if (!GeometryToolbox::ParseVector(points, slicesData) \|\|
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	472 points.size() != 3 * countPoints)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	473 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	474 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	475 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	476
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	477 Polygon polygon(sopInstanceUid);
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	478 polygon.Reserve(countPoints);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	479
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	480 for (size_t k = 0; k < countPoints; k++)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	481 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	482 Vector v(3);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	483 v[0] = points[3 * k];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	484 v[1] = points[3 * k + 1];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	485 v[2] = points[3 * k + 2];
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	486 polygon.AddPoint(v);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	487 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	488
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	489 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	490 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	491 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	492 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	493
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	494
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	495 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	496 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	497 const Structure& structure = GetStructure(index);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	498
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	499 Vector center;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	500 GeometryToolbox::AssignVector(center, 0, 0, 0);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	501 if (structure.polygons_.empty())
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	502 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	503 return center;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	504 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	505
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	506 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	507
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	508 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	509 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	510 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	511 if (!polygon->GetPoints().empty())
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	512 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	513 center += polygon->GetPoints().front() / n;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	514 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	515 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	516
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	517 return center;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	518 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	519
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	520
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	521 const std::string& DicomStructureSet::GetStructureName(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	522 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	523 return GetStructure(index).name_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	524 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	525
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	526
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	527 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	528 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	529 return GetStructure(index).interpretation_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	530 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	531
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	532
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	533 void DicomStructureSet::GetStructureColor(uint8_t& red,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	534 uint8_t& green,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	535 uint8_t& blue,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	536 size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	537 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	538 const Structure& s = GetStructure(index);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	539 red = s.red_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	540 green = s.green_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	541 blue = s.blue_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	542 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	543
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	544
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	545 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	546 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	547 for (Structures::const_iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	548 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	549 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	550 for (Polygons::const_iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	551 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	552 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	553 instances.insert(polygon->GetSopInstanceUid());
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	554 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	555 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	556 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	557
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	558
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	559 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	560 const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	561 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	562 double thickness)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	563 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	564 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	565 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	566 // This geometry is already known
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	567 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	568 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	569 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	570 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	571 if (thickness < 0)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	572 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	573 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	574 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	575
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	576 if (!referencedSlices_.empty())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	577 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	578 const ReferencedSlice& reference = referencedSlices_.begin()->second;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	579
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	580 if (reference.seriesInstanceUid_ != seriesInstanceUid)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	581 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	582 LOG(ERROR) << "This RT-STRUCT refers to several different series";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	583 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	584 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	585
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	586 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	587 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	588 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	589 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	590 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	591 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	592
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	593 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	594
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	595 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	596 structure != structures_.end(); ++structure)
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	597 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	598 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	599 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	600 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	601 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	602 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	603 }
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	604 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	605 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	606
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	607
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	608 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	609 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	610 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	611
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	612 double thickness = 1; // 1 mm by default
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	613
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	614 std::string s;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	615 Vector v;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	616 if (dataset.CopyToString(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	617 GeometryToolbox::ParseVector(v, s) &&
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	618 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	619 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	620 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	621 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	622
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	623 std::string instance, series;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	624 if (dataset.CopyToString(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	625 dataset.CopyToString(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	626 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	627 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	628 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	629 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	630 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	631 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	632 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	633 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	634
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	635
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	636 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	637 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	638 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	639 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	640 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	641 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	642 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	643 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	644 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	645 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	646 LOG(ERROR) << "Missing information about referenced instance: "
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	647 << polygon->GetSopInstanceUid();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	648 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	649 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	650 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	651 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	652 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	653
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	654
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	655 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	656 {
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	657 if (referencedSlices_.empty())
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	658 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	659 Vector v;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	660 GeometryToolbox::AssignVector(v, 0, 0, 1);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	661 return v;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	662 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	663 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	664 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	665 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	666 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	667 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	668
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	669
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	670 DicomStructureSet* DicomStructureSet::SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	671 const std::string& instanceId)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	672 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	673 const std::string uri = "/instances/" + instanceId + "/tags?ignore-length=3006-0050";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	674 OrthancPlugins::FullOrthancDataset dataset(orthanc, uri);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	675
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	676 std::auto_ptr<DicomStructureSet> result(new DicomStructureSet(dataset));
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	677
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	678 std::set<std::string> instances;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	679 result->GetReferencedInstances(instances);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	680
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	681 for (std::set<std::string>::const_iterator it = instances.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	682 it != instances.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	683 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	684 Json::Value lookup;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	685 MessagingToolbox::RestApiPost(lookup, orthanc, "/tools/lookup", *it);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	686
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	687 if (lookup.type() != Json::arrayValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	688 lookup.size() != 1 \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	689 !lookup[0].isMember("Type") \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	690 !lookup[0].isMember("Path") \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	691 lookup[0]["Type"].type() != Json::stringValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	692 lookup[0]["ID"].type() != Json::stringValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	693 lookup[0]["Type"].asString() != "Instance")
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	694 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	695 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	696 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	697
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	698 OrthancPlugins::FullOrthancDataset slice
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	699 (orthanc, "/instances/" + lookup[0]["ID"].asString() + "/tags");
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	700 Orthanc::DicomMap m;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	701 MessagingToolbox::ConvertDataset(m, slice);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	702 result->AddReferencedSlice(m);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	703 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	704
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	705 result->CheckReferencedSlices();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	706
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	707 return result.release();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	708 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	709
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	710
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	711 bool DicomStructureSet::ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	712 Structure& structure,
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	713 const CoordinateSystem3D& slice)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	714 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	715 polygons.clear();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	716
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	717 Vector normal = GetNormal();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	718
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	719 bool isOpposite;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	720 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	721 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	722 // This is an axial projection
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	723
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	724 for (Polygons::iterator polygon = structure.polygons_.begin();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	725 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	726 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	727 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	728 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	729 polygons.push_back(std::vector<PolygonPoint>());
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	730
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	731 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	732 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	733 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	734 double x, y;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	735 slice.ProjectPoint(x, y, *p);
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	736 polygons.back().push_back(std::make_pair(x, y));
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	737 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	738 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	739 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	740
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	741 return true;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	742 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	743 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) \|\|
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	744 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	745 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	746 #if 1
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	747 // Sagittal or coronal projection
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	748 std::vector<BoostPolygon> projected;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	749
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	750 for (Polygons::iterator polygon = structure.polygons_.begin();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	751 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	752 {
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	753 double x1, y1, x2, y2;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	754 if (polygon->Project(x1, y1, x2, y2, slice))
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	755 {
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	756 projected.push_back(CreateRectangle(x1, y1, x2, y2));
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	757 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	758 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	759
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	760 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	761 Union(merged, projected);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	762
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	763 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	764 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	765 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	766 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	767
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	768 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	769 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	770 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	771 polygons[i][j] = std::make_pair(outer[j].x(), outer[j].y());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	772 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	773 }
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	774 #else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	775 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	776 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	777 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	778 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	779 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	780 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	781 std::vector<PolygonPoint> p(4);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	782 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	783 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	784 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	785 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	786 polygons.push_back(p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	787 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	788 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	789 #endif
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	790
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	791 return true;
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	792 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	793 else
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	794 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	795 return false;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	796 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	797 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	798 }

Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.cpp @ 137:a30ff4866a1e wasm