annotate Framework/Toolbox/DicomStructureSet.cpp @ 1291:ea6c2254536d bugs/2020-02-invisible-slice

Removal of debug logs
author Benjamin Golinvaux <bgo@osimis.io>
date Fri, 21 Feb 2020 15:23:40 +0100
parents 2d8ab34c8c91
children 7ec8fea061b9
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "DicomStructureSet.h"
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23 #include "DicomStructureSetUtils.h"
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24
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25 #include "../Toolbox/GeometryToolbox.h"
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27 #include <Core/Logging.h>
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28 #include <Core/OrthancException.h>
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29 #include <Core/Toolbox.h>
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30 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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31 #include <Plugins/Samples/Common/DicomDatasetReader.h>
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33 #if defined(_MSC_VER)
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34 #pragma warning(push)
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35 #pragma warning(disable:4244)
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36 #endif
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37
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38 #include <limits>
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39 #include <stdio.h>
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40 #include <boost/geometry.hpp>
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41 #include <boost/geometry/geometries/point_xy.hpp>
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42 #include <boost/geometry/geometries/polygon.hpp>
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43 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
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44
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45 #if defined(_MSC_VER)
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46 #pragma warning(pop)
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47 #endif
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48
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49 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
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50 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
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51 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
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53
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54 static void Union(BoostMultiPolygon& output,
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55 std::vector<BoostPolygon>& input)
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56 {
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57 for (size_t i = 0; i < input.size(); i++)
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58 {
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59 boost::geometry::correct(input[i]);
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60 }
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61
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62 if (input.size() == 0)
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63 {
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64 output.clear();
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65 }
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66 else if (input.size() == 1)
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67 {
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68 output.resize(1);
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69 output[0] = input[0];
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70 }
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71 else
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72 {
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73 boost::geometry::union_(input[0], input[1], output);
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74
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75 for (size_t i = 0; i < input.size(); i++)
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76 {
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77 BoostMultiPolygon tmp;
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78 boost::geometry::union_(output, input[i], tmp);
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79 output = tmp;
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80 }
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81 }
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82 }
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83
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84 #ifdef USE_BOOST_UNION_FOR_POLYGONS
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85
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86 static BoostPolygon CreateRectangle(float x1, float y1,
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87 float x2, float y2)
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88 {
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89 BoostPolygon r;
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90 boost::geometry::append(r, BoostPoint(x1, y1));
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91 boost::geometry::append(r, BoostPoint(x1, y2));
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92 boost::geometry::append(r, BoostPoint(x2, y2));
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93 boost::geometry::append(r, BoostPoint(x2, y1));
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94 return r;
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95 }
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96
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97 #else
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98
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99 namespace OrthancStone
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100 {
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101 static RtStructRectangleInSlab CreateRectangle(float x1, float y1,
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102 float x2, float y2)
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103 {
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104 RtStructRectangleInSlab rect;
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105 rect.xmin = std::min(x1, x2);
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106 rect.xmax = std::max(x1, x2);
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107 rect.ymin = std::min(y1, y2);
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108 rect.ymax = std::max(y1, y2);
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109 return rect;
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110 }
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111
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112 bool CompareRectanglesForProjection(const std::pair<RtStructRectangleInSlab,double>& r1, const std::pair<RtStructRectangleInSlab, double>& r2)
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113 {
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114 return r1.second < r2.second;
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115 }
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116
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117 bool CompareSlabsY(const RtStructRectanglesInSlab& r1, const RtStructRectanglesInSlab& r2)
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118 {
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119 if ((r1.size() == 0) || (r2.size() == 0))
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120 return false;
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121
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122 return r1[0].ymax < r2[0].ymax;
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123 }
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124 }
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125
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126 #endif
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127
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128 namespace OrthancStone
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129 {
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130 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
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131 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
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132 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
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133 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
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134 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
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135 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
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136 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
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137 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
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138 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
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139 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
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140 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
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141 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
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142
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143
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144 static uint8_t ConvertColor(double v)
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145 {
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146 if (v < 0)
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147 {
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148 return 0;
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149 }
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150 else if (v >= 255)
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151 {
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152 return 255;
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153 }
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154 else
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155 {
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156 return static_cast<uint8_t>(v);
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157 }
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158 }
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159
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160
118
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161 static bool ParseVector(Vector& target,
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162 const OrthancPlugins::IDicomDataset& dataset,
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163 const OrthancPlugins::DicomPath& tag)
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164 {
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165 std::string value;
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166 return (dataset.GetStringValue(value, tag) &&
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167 LinearAlgebra::ParseVector(target, value));
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168 }
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169
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170 void DicomStructureSet::Polygon::CheckPointIsOnSlice(const Vector& v) const
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171 {
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172 if (hasSlice_)
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173 {
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174 double magnitude =
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175 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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176 if(!LinearAlgebra::IsNear(
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177 magnitude,
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178 projectionAlongNormal_,
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179 sliceThickness_ / 2.0 /* in mm */ ))
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180 {
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181 LOG(ERROR) << "This RT-STRUCT contains a point that is off the "
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182 << "slice of its instance | "
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183 << "magnitude = " << magnitude << " | "
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184 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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185 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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186
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187 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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188 }
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189 }
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190 }
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191
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192 bool DicomStructureSet::Polygon::IsPointOnSliceIfAny(const Vector& v) const
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193 {
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194 if (hasSlice_)
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195 {
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196 double magnitude =
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197 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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198 bool onSlice = LinearAlgebra::IsNear(
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199 magnitude,
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200 projectionAlongNormal_,
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201 sliceThickness_ / 2.0 /* in mm */);
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202 if (!onSlice)
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203 {
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204 LOG(WARNING) << "This RT-STRUCT contains a point that is off the "
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205 << "slice of its instance | "
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206 << "magnitude = " << magnitude << " | "
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207 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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208 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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209 }
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210 return onSlice;
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211 }
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212 else
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213 {
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214 return true;
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215 }
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216 }
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217
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218 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
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219 {
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220 #if 1
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221 // BGO 2019-09-03
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222 if (IsPointOnSliceIfAny(v))
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223 {
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224 points_.push_back(v);
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225 }
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226 #else
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227 CheckPoint(v);
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228 points_.push_back(v);
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229 #endif
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230 }
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231
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232
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233 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
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234 {
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235 if (hasSlice_)
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236 {
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237 return true;
32
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238 }
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239 else
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240 {
122
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241 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
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242
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243 if (it == slices.end())
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244 {
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245 return false;
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246 }
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247 else
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248 {
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249 const CoordinateSystem3D& geometry = it->second.geometry_;
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250
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251 hasSlice_ = true;
131
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252 geometry_ = geometry;
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253 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
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254 sliceThickness_ = it->second.thickness_;
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255
131
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256 extent_.Reset();
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257
122
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258 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
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259 {
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260 if (IsPointOnSliceIfAny(*it))
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261 {
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262 double x, y;
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263 geometry.ProjectPoint2(x, y, *it);
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264 extent_.AddPoint(x, y);
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265 }
122
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266 }
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267 return true;
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268 }
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269 }
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270 }
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271
122
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272 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
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273 {
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274 bool isOpposite = false;
122
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275
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276 if (points_.empty() ||
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277 !hasSlice_ ||
131
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278 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
122
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279 {
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280 return false;
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281 }
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282
131
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283 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
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284
158
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285 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
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286 sliceThickness_ / 2.0));
122
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287 }
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
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288
131
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289 bool DicomStructureSet::Polygon::Project(double& x1,
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290 double& y1,
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291 double& x2,
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292 double& y2,
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293 const CoordinateSystem3D& slice) const
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294 {
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295 // TODO: optimize this method using a sweep-line algorithm for polygons
132
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296
131
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297 if (!hasSlice_ ||
132
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298 points_.size() <= 1)
131
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299 {
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300 return false;
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301 }
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diff changeset
302
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303 double x, y;
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304 geometry_.ProjectPoint2(x, y, slice.GetOrigin());
131
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diff changeset
305
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diff changeset
306 bool isOpposite;
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diff changeset
307 if (GeometryToolbox::IsParallelOrOpposite
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308 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
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diff changeset
309 {
1000
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310 // plane is constant Y
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311
132
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312 if (y < extent_.GetY1() ||
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313 y > extent_.GetY2())
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314 {
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315 // The polygon does not intersect the input slice
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316 return false;
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317 }
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318
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319 bool isFirst = true;
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320 double xmin = std::numeric_limits<double>::infinity();
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321 double xmax = -std::numeric_limits<double>::infinity();
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322
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323 double prevX, prevY;
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diff changeset
324 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
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325
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326 for (size_t i = 0; i < points_.size(); i++)
131
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327 {
132
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328 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
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329 double curX, curY;
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diff changeset
330 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
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diff changeset
331
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diff changeset
332 // if prev* and cur* are on opposite sides of y, this means that the
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diff changeset
333 // segment intersects the plane.
132
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parents: 131
diff changeset
334 if ((prevY < y && curY > y) ||
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parents: 131
diff changeset
335 (prevY > y && curY < y))
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diff changeset
336 {
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diff changeset
337 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
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parents: 131
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338 xmin = std::min(xmin, p);
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parents: 131
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339 xmax = std::max(xmax, p);
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340 isFirst = false;
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diff changeset
341
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diff changeset
342 // xmin and xmax represent the extent of the rectangle along the
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diff changeset
343 // intersection between the plane and the polygon geometry
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parents: 994
diff changeset
344
132
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parents: 131
diff changeset
345 }
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parents: 131
diff changeset
346
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diff changeset
347 prevX = curX;
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348 prevY = curY;
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parents: 131
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349 }
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parents: 131
diff changeset
350
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diff changeset
351 // if NO segment intersects the plane
132
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parents: 131
diff changeset
352 if (isFirst)
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parents: 131
diff changeset
353 {
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parents: 131
diff changeset
354 return false;
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parents: 131
diff changeset
355 }
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parents: 131
diff changeset
356 else
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parents: 131
diff changeset
357 {
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parents: 994
diff changeset
358 // y is the plane y coord in the polygon geometry
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parents: 994
diff changeset
359 // xmin and xmax are ALSO expressed in the polygon geometry
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parents: 994
diff changeset
360
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parents: 994
diff changeset
361 // let's convert them to 3D world geometry...
132
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parents: 131
diff changeset
362 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131
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parents: 126
diff changeset
363 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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parents: 131
diff changeset
364 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
365 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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parents: 131
diff changeset
366
1000
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parents: 994
diff changeset
367 // then to the cutting plane geometry...
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parents: 1006
diff changeset
368 slice.ProjectPoint2(x1, y1, p1);
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parents: 1006
diff changeset
369 slice.ProjectPoint2(x2, y2, p2);
131
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diff changeset
370 return true;
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parents: 126
diff changeset
371 }
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parents: 126
diff changeset
372 }
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parents: 126
diff changeset
373 else if (GeometryToolbox::IsParallelOrOpposite
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parents: 126
diff changeset
374 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
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parents: 126
diff changeset
375 {
1000
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parents: 994
diff changeset
376 // plane is constant X
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parents: 994
diff changeset
377
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
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parents: 994
diff changeset
378 /*
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parents: 994
diff changeset
379 Please read the comments in the section above, by taking into account
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parents: 994
diff changeset
380 the fact that, in this case, the plane has a constant X, not Y (in
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parents: 994
diff changeset
381 polygon geometry_ coordinates)
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parents: 994
diff changeset
382 */
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parents: 994
diff changeset
383
132
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parents: 131
diff changeset
384 if (x < extent_.GetX1() ||
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parents: 131
diff changeset
385 x > extent_.GetX2())
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parents: 131
diff changeset
386 {
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parents: 131
diff changeset
387 return false;
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parents: 131
diff changeset
388 }
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diff changeset
389
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diff changeset
390 bool isFirst = true;
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parents: 131
diff changeset
391 double ymin = std::numeric_limits<double>::infinity();
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parents: 131
diff changeset
392 double ymax = -std::numeric_limits<double>::infinity();
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diff changeset
393
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parents: 131
diff changeset
394 double prevX, prevY;
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parents: 1006
diff changeset
395 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
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parents: 131
diff changeset
396
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parents: 131
diff changeset
397 for (size_t i = 0; i < points_.size(); i++)
131
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parents: 126
diff changeset
398 {
132
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diff changeset
399 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
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diff changeset
400 double curX, curY;
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parents: 1006
diff changeset
401 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
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parents: 131
diff changeset
402
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
403 if ((prevX < x && curX > x) ||
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diff changeset
404 (prevX > x && curX < x))
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diff changeset
405 {
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diff changeset
406 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
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diff changeset
407 ymin = std::min(ymin, p);
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parents: 131
diff changeset
408 ymax = std::max(ymax, p);
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409 isFirst = false;
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diff changeset
410 }
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parents: 131
diff changeset
411
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parents: 131
diff changeset
412 prevX = curX;
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parents: 131
diff changeset
413 prevY = curY;
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diff changeset
414 }
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parents: 131
diff changeset
415
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parents: 131
diff changeset
416 if (isFirst)
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diff changeset
417 {
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diff changeset
418 return false;
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parents: 131
diff changeset
419 }
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parents: 131
diff changeset
420 else
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parents: 131
diff changeset
421 {
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parents: 131
diff changeset
422 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
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parents: 126
diff changeset
423 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
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parents: 131
diff changeset
424 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
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parents: 126
diff changeset
425 sliceThickness_ / 2.0 * geometry_.GetNormal());
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parents: 126
diff changeset
426
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parents: 1006
diff changeset
427 slice.ProjectPoint2(x1, y1, p1);
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parents: 1006
diff changeset
428 slice.ProjectPoint2(x2, y2, p2);
132
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parents: 131
diff changeset
429
35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
430 // TODO WHY THIS???
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parents: 131
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431 y1 = -y1;
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parents: 131
diff changeset
432 y2 = -y2;
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parents: 131
diff changeset
433
131
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parents: 126
diff changeset
434 return true;
3e6163a53b16 optimization
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parents: 126
diff changeset
435 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
436 }
3e6163a53b16 optimization
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parents: 126
diff changeset
437 else
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parents: 126
diff changeset
438 {
3e6163a53b16 optimization
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parents: 126
diff changeset
439 // Should not happen
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parents: 126
diff changeset
440 return false;
3e6163a53b16 optimization
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parents: 126
diff changeset
441 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
442 }
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parents: 126
diff changeset
443
3e6163a53b16 optimization
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parents: 126
diff changeset
444
0
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parents:
diff changeset
445 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit
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parents:
diff changeset
446 {
351ab0da0150 initial commit
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parents:
diff changeset
447 if (index >= structures_.size())
351ab0da0150 initial commit
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parents:
diff changeset
448 {
125
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parents: 122
diff changeset
449 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
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parents:
diff changeset
450 }
351ab0da0150 initial commit
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parents:
diff changeset
451
351ab0da0150 initial commit
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parents:
diff changeset
452 return structures_[index];
351ab0da0150 initial commit
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parents:
diff changeset
453 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455
125
44fc253d4876 refactoring
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diff changeset
456 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
0
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parents:
diff changeset
457 {
125
44fc253d4876 refactoring
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parents: 122
diff changeset
458 if (index >= structures_.size())
44fc253d4876 refactoring
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parents: 122
diff changeset
459 {
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parents: 122
diff changeset
460 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 }
351ab0da0150 initial commit
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parents:
diff changeset
465
122
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diff changeset
466 DicomStructureSet::DicomStructureSet(const OrthancPlugins::FullOrthancDataset& tags)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 {
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parents: 516
diff changeset
468 OrthancPlugins::DicomDatasetReader reader(tags);
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parents: 31
diff changeset
469
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parents: 31
diff changeset
470 size_t count, tmp;
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parents: 31
diff changeset
471 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
472 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
473 tmp != count ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
474 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
475 tmp != count)
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479
32
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parents: 31
diff changeset
480 structures_.resize(count);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
481 for (size_t i = 0; i < count; i++)
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parents: 31
diff changeset
482 {
122
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parents: 121
diff changeset
483 structures_[i].interpretation_ = reader.GetStringValue
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parents: 516
diff changeset
484 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
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parents: 516
diff changeset
485 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
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parents: 121
diff changeset
486 "No interpretation");
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487
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parents: 121
diff changeset
488 structures_[i].name_ = reader.GetStringValue
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parents: 516
diff changeset
489 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
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parents: 516
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490 DICOM_TAG_ROI_NAME),
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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parents: 841
diff changeset
491 "No name");
0
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parents:
diff changeset
492
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 Vector color;
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parents: 516
diff changeset
494 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
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parents: 516
diff changeset
495 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
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parents: 31
diff changeset
496 color.size() == 3)
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parents:
diff changeset
497 {
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parents: 31
diff changeset
498 structures_[i].red_ = ConvertColor(color[0]);
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parents: 31
diff changeset
499 structures_[i].green_ = ConvertColor(color[1]);
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parents: 31
diff changeset
500 structures_[i].blue_ = ConvertColor(color[2]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
501 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
502 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
503 {
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parents: 31
diff changeset
504 structures_[i].red_ = 255;
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parents: 31
diff changeset
505 structures_[i].green_ = 0;
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parents: 31
diff changeset
506 structures_[i].blue_ = 0;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508
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parents: 31
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509 size_t countSlices;
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parents: 516
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510 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
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parents: 516
diff changeset
511 DICOM_TAG_CONTOUR_SEQUENCE)))
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parents: 31
diff changeset
512 {
121
e66b2c757790 displaying rt-struct
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parents: 118
diff changeset
513 countSlices = 0;
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
514 }
0
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parents:
diff changeset
515
841
266e2b0b9abc better error reporting in DicomStructureSetLoader + fixed POST request logic
Benjamin Golinvaux <bgo@osimis.io>
parents: 804
diff changeset
516 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
0
351ab0da0150 initial commit
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parents:
diff changeset
517 << "\" with interpretation \"" << structures_[i].interpretation_
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parents: 31
diff changeset
518 << "\" containing " << countSlices << " slices (color: "
0
351ab0da0150 initial commit
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parents:
diff changeset
519 << static_cast<int>(structures_[i].red_) << ","
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 << static_cast<int>(structures_[i].green_) << ","
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 << static_cast<int>(structures_[i].blue_) << ")";
351ab0da0150 initial commit
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parents:
diff changeset
522
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
523 // These temporary variables avoid allocating many vectors in the loop below
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
524 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
525 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
526 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
527
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
528 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
529 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
530 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
531
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
532 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
533 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
534 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
535
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
536 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
537 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
538 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
539 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
540 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
541
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
542 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
543 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
544 DICOM_TAG_CONTOUR_DATA);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
546 for (size_t j = 0; j < countSlices; j++)
0
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parents:
diff changeset
547 {
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parents: 31
diff changeset
548 unsigned int countPoints;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549
786
5aa728500586 optimizing constructor of DicomStructureSet
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parents: 738
diff changeset
550 countPointsPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
551 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
552 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
553 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
554 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
555
121
e66b2c757790 displaying rt-struct
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parents: 118
diff changeset
556 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
558 geometricTypePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
559 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
560 if (type != "CLOSED_PLANAR")
0
351ab0da0150 initial commit
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parents:
diff changeset
561 {
173
6b0411ac843a fix captain rt-struct
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parents: 159
diff changeset
562 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
6b0411ac843a fix captain rt-struct
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parents: 159
diff changeset
563 continue;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
566 size_t size;
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
567
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
568 imageSequencePath.SetPrefixIndex(1, j);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
569 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
570 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
571 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
575 referencedInstancePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
576 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
577
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
578 contourDataPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
579 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581 Vector points;
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a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
582 if (!LinearAlgebra::ParseVector(points, slicesData) ||
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
583 points.size() != 3 * countPoints)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
588 // seen in real world
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
589 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
590 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
591 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
592 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
593
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
594 Polygon polygon(sopInstanceUid);
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35c2b85836ce fix rtstruct projections
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parents: 131
diff changeset
595 polygon.Reserve(countPoints);
0
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parents:
diff changeset
596
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
597 for (size_t k = 0; k < countPoints; k++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 Vector v(3);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 v[0] = points[3 * k];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 v[1] = points[3 * k + 1];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 v[2] = points[3 * k + 2];
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e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
603 polygon.AddPoint(v);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 const Structure& structure = GetStructure(index);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 Vector center;
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a053ca7fa5c6 LinearAlgebra toolbox
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parents: 137
diff changeset
617 LinearAlgebra::AssignVector(center, 0, 0, 0);
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618 if (structure.polygons_.empty())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 {
122
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parents: 121
diff changeset
628 if (!polygon->GetPoints().empty())
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629 {
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parents: 121
diff changeset
630 center += polygon->GetPoints().front() / n;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
632 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 const std::string& DicomStructureSet::GetStructureName(size_t index) const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 return GetStructure(index).name_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646 return GetStructure(index).interpretation_;
351ab0da0150 initial commit
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parents:
diff changeset
647 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648
351ab0da0150 initial commit
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parents:
diff changeset
649
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
650 Color DicomStructureSet::GetStructureColor(size_t index) const
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
651 {
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
652 const Structure& s = GetStructure(index);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
653 return Color(s.red_, s.green_, s.blue_);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
654 }
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
655
61ba4b504e9a PolylineSceneLayer now has one color per chain
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parents: 794
diff changeset
656
0
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diff changeset
657 void DicomStructureSet::GetStructureColor(uint8_t& red,
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parents:
diff changeset
658 uint8_t& green,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659 uint8_t& blue,
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diff changeset
660 size_t index) const
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parents:
diff changeset
661 {
351ab0da0150 initial commit
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diff changeset
662 const Structure& s = GetStructure(index);
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parents:
diff changeset
663 red = s.red_;
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parents:
diff changeset
664 green = s.green_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
665 blue = s.blue_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
666 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
667
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parents:
diff changeset
668
122
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diff changeset
669 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
0
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parents:
diff changeset
670 {
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parents:
diff changeset
671 for (Structures::const_iterator structure = structures_.begin();
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parents:
diff changeset
672 structure != structures_.end(); ++structure)
351ab0da0150 initial commit
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parents:
diff changeset
673 {
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parents:
diff changeset
674 for (Polygons::const_iterator polygon = structure->polygons_.begin();
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parents:
diff changeset
675 polygon != structure->polygons_.end(); ++polygon)
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parents:
diff changeset
676 {
122
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parents: 121
diff changeset
677 instances.insert(polygon->GetSopInstanceUid());
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diff changeset
678 }
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parents: 121
diff changeset
679 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
680 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
681
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
682
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diff changeset
683 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
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diff changeset
684 const std::string& seriesInstanceUid,
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diff changeset
685 const CoordinateSystem3D& geometry,
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parents: 121
diff changeset
686 double thickness)
e3433dabfb8d refactoring DicomStructureSet
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diff changeset
687 {
e3433dabfb8d refactoring DicomStructureSet
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diff changeset
688 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
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parents: 121
diff changeset
689 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
690 // This geometry is already known
956
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parents: 949
diff changeset
691 LOG(ERROR) << "DicomStructureSet::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid;
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
692
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
693 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
122
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parents: 121
diff changeset
694 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
695 else
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
696 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
697 if (thickness < 0)
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
698 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
699 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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parents: 121
diff changeset
700 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
701
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
702 if (!referencedSlices_.empty())
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
703 {
e3433dabfb8d refactoring DicomStructureSet
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diff changeset
704 const ReferencedSlice& reference = referencedSlices_.begin()->second;
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parents: 121
diff changeset
705
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
706 if (reference.seriesInstanceUid_ != seriesInstanceUid)
0
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parents:
diff changeset
707 {
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
708 LOG(ERROR) << "This RT-STRUCT refers to several different series";
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
709 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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parents: 121
diff changeset
710 }
0
351ab0da0150 initial commit
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parents:
diff changeset
711
122
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parents: 121
diff changeset
712 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
713 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
714 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
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diff changeset
715 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
716 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
717 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
718
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parents: 121
diff changeset
719 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
0
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parents:
diff changeset
720
131
3e6163a53b16 optimization
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parents: 126
diff changeset
721 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization
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parents: 126
diff changeset
722 structure != structures_.end(); ++structure)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
723 {
3e6163a53b16 optimization
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parents: 126
diff changeset
724 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization
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parents: 126
diff changeset
725 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
726 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
727 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
728 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
729 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
730 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
731 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
732
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
733
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
734 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
735 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
736 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
737
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
738 double thickness = 1; // 1 mm by default
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
739
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
740 std::string s;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
741 Vector v;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
742 if (dataset.LookupStringValue(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
743 LinearAlgebra::ParseVector(v, s) &&
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
744 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
745 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
746 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
747 }
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
748
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parents: 121
diff changeset
749 std::string instance, series;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
750 if (dataset.LookupStringValue(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
751 dataset.LookupStringValue(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
122
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
752 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
753 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
754 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
755 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
756 {
e3433dabfb8d refactoring DicomStructureSet
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parents: 121
diff changeset
757 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
758 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
759 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
760
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
761
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
762 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
763 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
764 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
765 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
766 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
767 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
768 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
769 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
770 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
771 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
772 std::string sopInstanceUid = polygon->GetSopInstanceUid();
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
773 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
774 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
775 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
776 << " missing information about referenced instance "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
777 << "(sopInstanceUid is empty!)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
778 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
779 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
780 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
781 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
782 << " missing information about referenced instance "
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
783 << "(sopInstanceUid = " << sopInstanceUid << ")";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
784 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
785 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
786 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
787 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
788 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
789 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
790
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
791
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
792 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
793 {
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
794 if (referencedSlices_.empty())
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
795 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
796 Vector v;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
797 LinearAlgebra::AssignVector(v, 0, 0, 1);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
798 return v;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
799 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
800 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
801 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
802 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
803 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
804 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
805
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
806 #ifdef USE_BOOST_UNION_FOR_POLYGONS
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
807 bool DicomStructureSet::ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
808 const Structure& structure,
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
809 const CoordinateSystem3D& slice) const
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
810 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
811 bool DicomStructureSet::ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
812 const Structure& structure,
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
813 const CoordinateSystem3D& slice) const
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
814 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
815 {
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
816 #ifdef USE_BOOST_UNION_FOR_POLYGONS
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
817 polygons.clear();
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
818 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
819 segments.clear();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
820 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
821
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
822 Vector normal = GetNormal();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
823
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
824 bool isOpposite;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
825 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
826 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
827 // This is an axial projection
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
828
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
829 for (Polygons::const_iterator polygon = structure.polygons_.begin();
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
830 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
831 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
832 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
833 {
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
834 #ifdef USE_BOOST_UNION_FOR_POLYGONS
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
835 polygons.push_back(std::vector<Point2D>());
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
836
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
837 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
838 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
839 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
840 double x, y;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
841 slice.ProjectPoint2(x, y, *p);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
842 polygons.back().push_back(Point2D(x, y));
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
843 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
844 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
845 // we need to add all the segments corresponding to this polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
846 const std::vector<Vector>& points3D = polygon->GetPoints();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
847 if (points3D.size() >= 3)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
848 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
849 Point2D prev2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
850 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
851 Vector prev = points3D[0];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
852 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
853 slice.ProjectPoint2(prevX, prevY, prev);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
854 prev2D = Point2D(prevX, prevY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
855 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
856
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
857 size_t pointCount = points3D.size();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
858 for (size_t ipt = 1; ipt < pointCount; ++ipt)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
859 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
860 Vector next = points3D[ipt];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
861 double nextX, nextY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
862 slice.ProjectPoint2(nextX, nextY, next);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
863 Point2D next2D(nextX, nextY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
864 segments.push_back(std::pair<Point2D, Point2D>(prev2D, next2D));
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
865 prev2D = next2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
866 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
867 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
868 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
869 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
870 LOG(ERROR) << "Contour with less than 3 points!";
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
871 // !!!
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
872 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
873 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
874 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
875 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
876
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
877 return true;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
878 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
879 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) ||
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
880 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
881 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
882 #if 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
883 // Sagittal or coronal projection
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
884
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
885 #ifdef USE_BOOST_UNION_FOR_POLYGONS
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
886 std::vector<BoostPolygon> projected;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
887 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
888 // this will contain the intersection of the polygon slab with
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
889 // the cutting plane, projected on the cutting plane coord system
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
890 // (that yields a rectangle) + the Z coordinate of the polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
891 // (this is required to group polygons with the same Z later)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
892 std::vector<std::pair<RtStructRectangleInSlab, double> > projected;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
893 #endif
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
894 for (Polygons::const_iterator polygon = structure.polygons_.begin();
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
895 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
896 {
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
897 double x1, y1, x2, y2;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
898
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
899 if (polygon->Project(x1, y1, x2, y2, slice))
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
900 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
901 double curZ = polygon->GetGeometryOrigin()[2];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
902
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
903 // x1,y1 and x2,y2 are in "slice" coordinates (the cutting plane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
904 // geometry)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
905 projected.push_back(std::make_pair(CreateRectangle(
516
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
906 static_cast<float>(x1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
907 static_cast<float>(y1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) +
Benjamin Golinvaux <bgo@osimis.io>
parents: 439
diff changeset
908 static_cast<float>(x2),
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
909 static_cast<float>(y2)),curZ));
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
910 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
911 }
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
912 #ifndef USE_BOOST_UNION_FOR_POLYGONS
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
913 // projected contains a set of rectangles specified by two opposite
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
914 // corners (x1,y1,x2,y2)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
915 // we need to merge them
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
916 // each slab yields ONE polygon!
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
917
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
918 // we need to sorted all the rectangles that originate from the same Z
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
919 // into lanes. To make sure they are grouped together in the array, we
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
920 // sort it.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
921 std::sort(projected.begin(), projected.end(), CompareRectanglesForProjection);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
922
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
923 std::vector<RtStructRectanglesInSlab> rectanglesForEachSlab;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
924 rectanglesForEachSlab.reserve(projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
925
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
926 double curZ = 0;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
927 for (size_t i = 0; i < projected.size(); ++i)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
928 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
929 #if 0
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
930 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
931 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
932 if (i == 0)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
933 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
934 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
935 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
936 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
937 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
938 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
939 // this check is needed to prevent creating a new slab if
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
940 // the new polygon is at the same Z coord than last one
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
941 if (!LinearAlgebra::IsNear(curZ, projected[i].second))
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
942 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
943 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
944 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
945 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
946 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
947 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
948
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
949 rectanglesForEachSlab.back().push_back(projected[i].first);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
950
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
951 // as long as they have the same y, we should put them into the same lane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
952 // BUT in Sebastien's code, there is only one polygon per lane.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
953
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
954 //std::cout << "rect: xmin = " << rect.xmin << " xmax = " << rect.xmax << " ymin = " << rect.ymin << " ymax = " << rect.ymax << std::endl;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
955 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
956
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
957 // now we need to sort the slabs in increasing Y order (see ConvertListOfSlabsToSegments)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
958 std::sort(rectanglesForEachSlab.begin(), rectanglesForEachSlab.end(), CompareSlabsY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
959
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
960 ConvertListOfSlabsToSegments(segments, rectanglesForEachSlab, projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
961 #else
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
962 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
963 Union(merged, projected);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
964
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
965 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
966 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
967 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
968 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
969
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
970 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
971 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
972 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
973 polygons[i][j] = Point2D(outer[j].x(), outer[j].y());
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
974 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
975 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
976 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
977
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
978 #else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
979 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
980 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
981 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
982 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
983 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
984 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
985 std::vector<Point2D> p(4);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
986 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
987 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
988 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
989 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
990 polygons.push_back(p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
991 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
992 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
993 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
994
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
995 return true;
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
996 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
997 else
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
998 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
999 return false;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1000 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1001 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1002 }