Mercurial > hg > orthanc-stone

annotate OrthancStone/UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp @ 1986:e29783c92419

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refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 31 Oct 2022 15:20:18 +0100
parents a2955abe4c2e
children 07964689cb0b
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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24 /*
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25 these tests are single-threaded... no worries for old buggy compilers
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26 (I'm talking to YOU, cl.exe v100! And to your ancestors!)
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27 */
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28 static std::string& GetTestJson()
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29 {
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30 static const char* resultRaw = NULL;
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31 static std::string result;
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32 if (resultRaw == NULL)
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33 {
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34 std::stringstream sst;
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35
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36 sst << k_rtStruct_json00
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37 << k_rtStruct_json01
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38 << k_rtStruct_json02
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39 << k_rtStruct_json03
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40 << k_rtStruct_json04
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41 << k_rtStruct_json05
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42 << k_rtStruct_json06
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43 << k_rtStruct_json07
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44 << k_rtStruct_json08;
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45
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46 std::string wholeBody = sst.str();
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47 result.swap(wholeBody);
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48 resultRaw = result.c_str();
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49 }
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50 return result;
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51 }
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52
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53
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54 namespace
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55 {
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56 void Initialize(const char* orthancApiUrl, OrthancStone::ILoadersContext& loadersContext)
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57 {
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58 Orthanc::WebServiceParameters p;
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59
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60 OrthancStone::GenericLoadersContext& typedLoadersContext =
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61 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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62 // Default is http://localhost:8042
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63 // Here's how you may change it
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64 p.SetUrl(orthancApiUrl);
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65 p.SetCredentials("orthanc", "orthanc");
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66 typedLoadersContext.SetOrthancParameters(p);
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67
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68 typedLoadersContext.StartOracle();
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69 }
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70
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71 void Exitialize(OrthancStone::ILoadersContext& loadersContext)
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72 {
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73 OrthancStone::GenericLoadersContext& typedLoadersContext =
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74 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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75
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76 typedLoadersContext.StopOracle();
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77 }
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78
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79
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80 #if 0
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81 class TestObserver : public ObserverBase<TestObserver>
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82 {
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83 public:
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84 TestObserver() {};
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85
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86 virtual void Handle
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87
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88 };
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89 #endif
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90
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91 }
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92
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93 TEST(StructureSet, DISABLED_StructureSetLoader_injection_feature_2020_05_10)
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94 {
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95 namespace pt = boost::posix_time;
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96
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97 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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98 Initialize("http://localhost:8042/", *loadersContext);
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99
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100 boost::shared_ptr<DicomStructureSetLoader> loader = DicomStructureSetLoader::Create(*loadersContext);
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101
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102 // replace with Orthanc ID of an uploaded RTSTRUCT instance!
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103 loader->LoadInstanceFullVisibility("72c773ac-5059f2c4-2e6a9120-4fd4bca1-45701661");
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104
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105 bool bContinue(true);
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106
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107 pt::ptime initialTime = pt::second_clock::local_time();
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108
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109 while (bContinue)
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110 {
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111 bContinue = !loader->AreStructuresReady();
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112 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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113
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114 {
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115 pt::ptime nowTime = pt::second_clock::local_time();
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116 pt::time_duration diff = nowTime - initialTime;
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117 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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118 std::cout << seconds << " seconds elapsed...\n";
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119 if (seconds > 30)
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120 {
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121 std::cout << "More than 30 seconds elapsed... Aborting test :(\n";
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122 //GTEST_FATAL_FAILURE_("More than 30 seconds elapsed... Aborting test :(");
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123 //bContinue = false;
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124 }
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125 }
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126 }
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127 }
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128
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129 class SliceProcessor :
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130 public OrthancStone::OrthancSeriesVolumeProgressiveLoader::ISlicePostProcessor,
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131 public OrthancStone::DicomStructureSetLoader::IInstanceLookupHandler
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132 {
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133 public:
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134 SliceProcessor(OrthancStone::DicomStructureSetLoader& structLoader) : structLoader_(structLoader)
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135 {
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136 }
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137
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138 virtual void ProcessCTDicomSlice(const Orthanc::DicomMap& instance) ORTHANC_OVERRIDE
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139 {
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140 std::string sopInstanceUid;
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141 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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142 {
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143 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing SOPInstanceUID in a DICOM instance");
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144 }
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145 slicesDicom_[sopInstanceUid] = boost::shared_ptr<DicomMap>(instance.Clone());
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146 }
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147
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148 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE
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149 {
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150 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin();
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151 it != nonEmptyInstances.end();
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152 ++it)
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153 {
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154 const std::string nonEmptyInstance = *it;
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155 if (slicesDicom_.find(nonEmptyInstance) == slicesDicom_.end())
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156 {
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157 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Referenced SOPInstanceUID not found in CT");
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158 }
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159 boost::shared_ptr<Orthanc::DicomMap> instance = slicesDicom_[nonEmptyInstance];
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160 structLoader_.AddReferencedSlice(*instance);
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161 }
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162 }
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163
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164 OrthancStone::DicomStructureSetLoader& structLoader_;
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165 std::map<std::string, boost::shared_ptr<Orthanc::DicomMap> > slicesDicom_;
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166 };
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167
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168 void LoadCtSeriesBlocking(boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader, std::string seriesId)
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169 {
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170 namespace pt = boost::posix_time;
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171
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172 // Load the CT
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173 ctLoader->LoadSeries(seriesId);
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174
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175 // Wait for CT to be loaded
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176 pt::ptime initialTime = pt::second_clock::local_time();
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177 {
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178 bool bContinue(true);
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179 while (bContinue)
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180 {
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181 bContinue = !ctLoader->IsVolumeImageReadyInHighQuality();
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182 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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183
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184 {
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185 pt::ptime nowTime = pt::second_clock::local_time();
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186 pt::time_duration diff = nowTime - initialTime;
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187 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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188 std::cout << seconds << " seconds elapsed...\n";
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189 if (seconds > 30)
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190 {
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191 const char* msg = "More than 30 seconds elapsed when waiting for CT... Aborting test :(\n";
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192 GTEST_FATAL_FAILURE_(msg);
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193 bContinue = false;
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194 }
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195 }
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196 }
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197 }
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198 }
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199
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200
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201 /**
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202 Will fill planes
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203 */
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204 void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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205 OrthancStone::VolumeProjection projection,
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206 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)
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207 {
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208 planes.clear(); // inefficient : we don't care
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209
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210 const VolumeImageGeometry& geometry = ctLoader->GetImageGeometry();
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211 const unsigned int depth = geometry.GetProjectionDepth(projection);
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212
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213 planes.resize(depth);
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214
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215 for (unsigned int z = 0; z < depth; z++)
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216 {
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217 planes[z] = geometry.GetProjectionSlice(projection, z);
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218 }
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219 }
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220
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221 void LoadRtStructBlocking(boost::shared_ptr<OrthancStone::DicomStructureSetLoader> structLoader, std::string instanceId)
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222 {
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223 namespace pt = boost::posix_time;
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224
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225 // Load RTSTRUCT
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226 structLoader->LoadInstanceFullVisibility(instanceId);
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227
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228 pt::ptime initialTime = pt::second_clock::local_time();
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229
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230 // Wait for the loading process to complete
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231 {
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232 bool bContinue(true);
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233 while (bContinue)
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234 {
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235 bContinue = !structLoader->AreStructuresReady();
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236 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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237
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238 {
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239 pt::ptime nowTime = pt::second_clock::local_time();
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240 pt::time_duration diff = nowTime - initialTime;
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241 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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242 std::cout << seconds << " seconds elapsed...\n";
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243 if (seconds > 30)
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244 {
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245 const char* msg = "More than 30 seconds elapsed when waiting for RTSTRUCT... Aborting test :(\n";
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246 GTEST_FATAL_FAILURE_(msg);
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247 bContinue = false;
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248 }
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249 }
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250 }
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251 }
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252 }
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253
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254 TEST(StructureSet, DISABLED_Integration_Compound_CT_Struct_Loading)
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255 {
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256 const double TOLERANCE = 0.0000001;
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257
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258 // create loaders context
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259 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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260 Initialize("http://localhost:8042/", *loadersContext);
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261
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262 const char* ctSeriesId = "a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa";
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263 const char* rtStructInstanceId = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9";
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264
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265 // we'll compare normal loading and optimized loading with SliceProcessor to store the dicom
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266
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267 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> normalStructLoader;
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268 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> optimizedStructLoader;
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269
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270 {
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271 // Create the CT volume
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272 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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273
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274 // Create CT loader
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275 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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276 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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277
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278 // Create struct loader
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279 normalStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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280
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281 // Load the CT
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282 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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283
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284 const OrthancStone::VolumeImageGeometry& imageGeometry = ctLoader->GetImageGeometry();
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285 unsigned int width = imageGeometry.GetWidth();
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286 EXPECT_EQ(512u, width);
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287 unsigned int height = imageGeometry.GetHeight();
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288 EXPECT_EQ(512u, height);
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289 unsigned int depth = imageGeometry.GetDepth();
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290 EXPECT_EQ(109u, depth);
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291
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292 // Load the RTStruct
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293 LoadRtStructBlocking(normalStructLoader, rtStructInstanceId);
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294 }
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295
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296 std::vector<OrthancStone::CoordinateSystem3D> axialPlanes;
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297 std::vector<OrthancStone::CoordinateSystem3D> coronalPlanes;
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298 std::vector<OrthancStone::CoordinateSystem3D> sagittalPlanes;
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299
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300 {
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301 // Create the CT volume
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302 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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303
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304 // Create CT loader
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305 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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306 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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307
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308 // Create struct loader
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309 optimizedStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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310
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311 // create the slice processor / instance lookup
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312 boost::shared_ptr<SliceProcessor> sliceProcessor(new SliceProcessor(*optimizedStructLoader));
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313
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314 // Inject it into CT loader
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315 ctLoader->SetDicomSlicePostProcessor(sliceProcessor);
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316
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317 // Inject it into RTSTRUCT loader
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318 optimizedStructLoader->SetInstanceLookupHandler(sliceProcessor);
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319
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320 // Load the CT
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321 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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322
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323 // now, the slices are collected. let's do some checks
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324 EXPECT_EQ(109u, sliceProcessor->slicesDicom_.size());
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325
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326 // Load the RTStruct
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327 LoadRtStructBlocking(optimizedStructLoader, rtStructInstanceId);
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328
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329 GetCTPlanes(axialPlanes, VolumeProjection_Axial, ctLoader);
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330 GetCTPlanes(coronalPlanes, VolumeProjection_Coronal, ctLoader);
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331 GetCTPlanes(sagittalPlanes, VolumeProjection_Sagittal, ctLoader);
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332 }
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333
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334 // DO NOT DELETE THOSE!
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335 OrthancStone::DicomStructureSet* normalContent = normalStructLoader->GetContent();
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336 OrthancStone::DicomStructureSet* optimizedContent = optimizedStructLoader->GetContent();
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337
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338 EXPECT_EQ(normalContent->GetStructuresCount(), optimizedContent->GetStructuresCount());
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339
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340 /*void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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341 OrthancStone::VolumeProjection projection,
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342 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)*/
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343
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344
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345 std::vector<OrthancStone::CoordinateSystem3D> allPlanes;
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346
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347 // let's gather all the possible cutting planes in a single struct
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348 for (size_t i = 0; i < axialPlanes.size(); ++i)
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349 allPlanes.push_back(axialPlanes[i]);
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350
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351 for (size_t i = 0; i < coronalPlanes.size(); ++i)
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352 allPlanes.push_back(coronalPlanes[i]);
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353
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354 for (size_t i = 0; i < sagittalPlanes.size(); ++i)
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355 allPlanes.push_back(sagittalPlanes[i]);
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356
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357 for (size_t i = 0; i < normalContent->GetStructuresCount(); ++i)
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358 {
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359 std::cout << "Testing structure (" << i << "/" << normalContent->GetStructuresCount() << ")\n";
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360 Vector structureCenter1 = normalContent->GetStructureCenter(i);
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361 const std::string& structureName1 = normalContent->GetStructureName(i);
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362 const std::string& structureInterpretation1 = normalContent->GetStructureInterpretation(i);
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363 Color structureColor1 = normalContent->GetStructureColor(i);
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364
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365 Vector structureCenter2 = optimizedContent->GetStructureCenter(i);
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366 const std::string& structureName2 = optimizedContent->GetStructureName(i);
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367 const std::string& structureInterpretation2 = optimizedContent->GetStructureInterpretation(i);
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368 Color structureColor2 = optimizedContent->GetStructureColor(i);
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369
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370 EXPECT_NEAR(structureCenter1[0], structureCenter2[0], TOLERANCE);
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371 EXPECT_NEAR(structureCenter1[1], structureCenter2[1], TOLERANCE);
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372 EXPECT_NEAR(structureCenter1[2], structureCenter2[2], TOLERANCE);
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373
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374 EXPECT_EQ(structureName1, structureName2);
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375 EXPECT_EQ(structureInterpretation1, structureInterpretation2);
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376 EXPECT_EQ(structureColor1.GetRed(), structureColor2.GetRed());
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377 EXPECT_EQ(structureColor1.GetGreen(), structureColor2.GetGreen());
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378 EXPECT_EQ(structureColor1.GetBlue(), structureColor2.GetBlue());
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379
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380 // "random" walk through the planes. Processing them all takes too long (~ 1 min)
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381 for (size_t j = 0; j < allPlanes.size(); j += 37)
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382 {
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383 const OrthancStone::CoordinateSystem3D& plane = allPlanes[j];
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384
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385 std::vector< std::pair<Point2D, Point2D> > segments1;
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386 std::vector< std::pair<Point2D, Point2D> > segments2;
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387
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388 bool ok1 = normalContent->ProjectStructure(segments1, i, plane);
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389 bool ok2 = optimizedContent->ProjectStructure(segments2, i, plane);
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390
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391 // checks here
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392 EXPECT_EQ(ok1, ok2);
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393 EXPECT_EQ(segments1.size(), segments2.size());
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394
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395 for (size_t k = 0; k < segments1.size(); ++k)
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396 {
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397 EXPECT_NEAR(segments1[k].first.x, segments2[k].first.x, TOLERANCE);
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398 EXPECT_NEAR(segments1[k].first.y, segments2[k].first.y, TOLERANCE);
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399 EXPECT_NEAR(segments1[k].second.x, segments2[k].second.x, TOLERANCE);
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400 EXPECT_NEAR(segments1[k].second.y, segments2[k].second.y, TOLERANCE);
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401 }
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402 }
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403 }
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404
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405 Exitialize(*loadersContext);
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406 }