Mercurial > hg > orthanc-stone

annotate UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp @ 1589:8c5f9864545f

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adding missing headers
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 22 Oct 2020 16:59:23 +0200
parents a1405ab3a91c
children 4fb8fdf03314
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1589
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
1541
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22 /*
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23 these tests are single-threaded... no worries for old buggy compilers
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24 (I'm talking to YOU, cl.exe v100! And to your ancestors!)
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25 */
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26 static std::string& GetTestJson()
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27 {
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28 static const char* resultRaw = NULL;
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29 static std::string result;
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30 if (resultRaw == NULL)
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31 {
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32 std::stringstream sst;
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33
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34 sst << k_rtStruct_json00
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35 << k_rtStruct_json01
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36 << k_rtStruct_json02
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37 << k_rtStruct_json03
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38 << k_rtStruct_json04
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39 << k_rtStruct_json05
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40 << k_rtStruct_json06
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41 << k_rtStruct_json07
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42 << k_rtStruct_json08;
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43
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44 std::string wholeBody = sst.str();
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45 result.swap(wholeBody);
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46 resultRaw = result.c_str();
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47 }
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48 return result;
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49 }
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50
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51
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52 namespace
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53 {
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54 void Initialize(const char* orthancApiUrl, OrthancStone::ILoadersContext& loadersContext)
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55 {
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56 Orthanc::WebServiceParameters p;
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57
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58 OrthancStone::GenericLoadersContext& typedLoadersContext =
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59 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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60 // Default is http://localhost:8042
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61 // Here's how you may change it
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62 p.SetUrl(orthancApiUrl);
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63 p.SetCredentials("orthanc", "orthanc");
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64 typedLoadersContext.SetOrthancParameters(p);
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65
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66 typedLoadersContext.StartOracle();
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67 }
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68
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69 void Exitialize(OrthancStone::ILoadersContext& loadersContext)
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70 {
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71 OrthancStone::GenericLoadersContext& typedLoadersContext =
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72 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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73
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74 typedLoadersContext.StopOracle();
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75 }
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76
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77
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78 #if 0
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79 class TestObserver : public ObserverBase<TestObserver>
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80 {
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81 public:
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82 TestObserver() {};
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83
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84 virtual void Handle
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85
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86 };
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87 #endif
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88
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89 }
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90
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91 TEST(StructureSet, DISABLED_StructureSetLoader_injection_feature_2020_05_10)
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92 {
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93 namespace pt = boost::posix_time;
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94
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95 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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96 Initialize("http://localhost:8042/", *loadersContext);
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97
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98 boost::shared_ptr<DicomStructureSetLoader> loader = DicomStructureSetLoader::Create(*loadersContext);
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99
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100 // replace with Orthanc ID of an uploaded RTSTRUCT instance!
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101 loader->LoadInstanceFullVisibility("72c773ac-5059f2c4-2e6a9120-4fd4bca1-45701661");
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102
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103 bool bContinue(true);
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104
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105 pt::ptime initialTime = pt::second_clock::local_time();
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106
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107 while (bContinue)
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108 {
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109 bContinue = !loader->AreStructuresReady();
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110 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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111
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112 {
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113 pt::ptime nowTime = pt::second_clock::local_time();
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114 pt::time_duration diff = nowTime - initialTime;
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115 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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116 std::cout << seconds << " seconds elapsed...\n";
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117 if (seconds > 30)
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118 {
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119 std::cout << "More than 30 seconds elapsed... Aborting test :(\n";
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120 //GTEST_FATAL_FAILURE_("More than 30 seconds elapsed... Aborting test :(");
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121 //bContinue = false;
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122 }
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123 }
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124 }
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125 }
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126
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127 class SliceProcessor :
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128 public OrthancStone::OrthancSeriesVolumeProgressiveLoader::ISlicePostProcessor,
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129 public OrthancStone::DicomStructureSetLoader::IInstanceLookupHandler
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130 {
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131 public:
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132 SliceProcessor(OrthancStone::DicomStructureSetLoader& structLoader) : structLoader_(structLoader)
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133 {
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134 }
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135
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136 virtual void ProcessCTDicomSlice(const Orthanc::DicomMap& instance) ORTHANC_OVERRIDE
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137 {
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138 std::string sopInstanceUid;
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139 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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140 {
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141 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing SOPInstanceUID in a DICOM instance");
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142 }
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143 slicesDicom_[sopInstanceUid] = boost::shared_ptr<DicomMap>(instance.Clone());
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144 }
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145
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146 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE
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147 {
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148 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin();
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149 it != nonEmptyInstances.end();
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150 ++it)
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151 {
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152 const std::string nonEmptyInstance = *it;
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153 if (slicesDicom_.find(nonEmptyInstance) == slicesDicom_.end())
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154 {
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155 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Referenced SOPInstanceUID not found in CT");
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156 }
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157 boost::shared_ptr<Orthanc::DicomMap> instance = slicesDicom_[nonEmptyInstance];
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158 structLoader_.AddReferencedSlice(*instance);
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159 }
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160 }
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161
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162 OrthancStone::DicomStructureSetLoader& structLoader_;
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163 std::map<std::string, boost::shared_ptr<Orthanc::DicomMap> > slicesDicom_;
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164 };
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165
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166 void LoadCtSeriesBlocking(boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader, std::string seriesId)
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167 {
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168 namespace pt = boost::posix_time;
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169
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170 // Load the CT
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171 ctLoader->LoadSeries(seriesId);
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172
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173 // Wait for CT to be loaded
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174 pt::ptime initialTime = pt::second_clock::local_time();
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175 {
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176 bool bContinue(true);
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177 while (bContinue)
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178 {
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179 bContinue = !ctLoader->IsVolumeImageReadyInHighQuality();
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180 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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181
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182 {
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183 pt::ptime nowTime = pt::second_clock::local_time();
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184 pt::time_duration diff = nowTime - initialTime;
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185 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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186 std::cout << seconds << " seconds elapsed...\n";
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187 if (seconds > 30)
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188 {
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189 const char* msg = "More than 30 seconds elapsed when waiting for CT... Aborting test :(\n";
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190 GTEST_FATAL_FAILURE_(msg);
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191 bContinue = false;
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192 }
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193 }
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194 }
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195 }
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196 }
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197
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198
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199 /**
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200 Will fill planes
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201 */
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202 void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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203 OrthancStone::VolumeProjection projection,
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204 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)
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205 {
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206 planes.clear(); // inefficient : we don't care
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207
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208 const VolumeImageGeometry& geometry = ctLoader->GetImageGeometry();
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209 const unsigned int depth = geometry.GetProjectionDepth(projection);
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210
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211 planes.resize(depth);
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212
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213 for (unsigned int z = 0; z < depth; z++)
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214 {
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215 planes[z] = geometry.GetProjectionSlice(projection, z);
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216 }
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217 }
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218
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219 void LoadRtStructBlocking(boost::shared_ptr<OrthancStone::DicomStructureSetLoader> structLoader, std::string instanceId)
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220 {
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221 namespace pt = boost::posix_time;
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222
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223 // Load RTSTRUCT
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224 structLoader->LoadInstanceFullVisibility(instanceId);
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225
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226 pt::ptime initialTime = pt::second_clock::local_time();
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227
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228 // Wait for the loading process to complete
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229 {
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230 bool bContinue(true);
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231 while (bContinue)
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232 {
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233 bContinue = !structLoader->AreStructuresReady();
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234 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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235
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236 {
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237 pt::ptime nowTime = pt::second_clock::local_time();
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238 pt::time_duration diff = nowTime - initialTime;
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239 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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240 std::cout << seconds << " seconds elapsed...\n";
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241 if (seconds > 30)
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242 {
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243 const char* msg = "More than 30 seconds elapsed when waiting for RTSTRUCT... Aborting test :(\n";
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244 GTEST_FATAL_FAILURE_(msg);
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245 bContinue = false;
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246 }
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247 }
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248 }
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249 }
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250 }
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251
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252 TEST(StructureSet, DISABLED_Integration_Compound_CT_Struct_Loading)
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253 {
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254 const double TOLERANCE = 0.0000001;
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255
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256 // create loaders context
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257 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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258 Initialize("http://localhost:8042/", *loadersContext);
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259
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260 const char* ctSeriesId = "a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa";
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261 const char* rtStructInstanceId = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9";
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262
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263 // we'll compare normal loading and optimized loading with SliceProcessor to store the dicom
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264
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265 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> normalStructLoader;
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266 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> optimizedStructLoader;
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267
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268 {
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269 // Create the CT volume
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270 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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271
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272 // Create CT loader
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273 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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274 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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275
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276 // Create struct loader
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277 normalStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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278
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279 // Load the CT
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280 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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281
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282 const OrthancStone::VolumeImageGeometry& imageGeometry = ctLoader->GetImageGeometry();
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283 unsigned int width = imageGeometry.GetWidth();
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284 EXPECT_EQ(512u, width);
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285 unsigned int height = imageGeometry.GetHeight();
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286 EXPECT_EQ(512u, height);
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287 unsigned int depth = imageGeometry.GetDepth();
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288 EXPECT_EQ(109u, depth);
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289
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290 // Load the RTStruct
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291 LoadRtStructBlocking(normalStructLoader, rtStructInstanceId);
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292 }
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293
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294 std::vector<OrthancStone::CoordinateSystem3D> axialPlanes;
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295 std::vector<OrthancStone::CoordinateSystem3D> coronalPlanes;
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296 std::vector<OrthancStone::CoordinateSystem3D> sagittalPlanes;
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297
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298 {
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299 // Create the CT volume
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300 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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301
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302 // Create CT loader
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303 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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304 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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305
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306 // Create struct loader
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307 optimizedStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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308
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309 // create the slice processor / instance lookup
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310 boost::shared_ptr<SliceProcessor> sliceProcessor(new SliceProcessor(*optimizedStructLoader));
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311
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312 // Inject it into CT loader
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313 ctLoader->SetDicomSlicePostProcessor(sliceProcessor);
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314
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315 // Inject it into RTSTRUCT loader
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316 optimizedStructLoader->SetInstanceLookupHandler(sliceProcessor);
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317
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318 // Load the CT
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319 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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320
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321 // now, the slices are collected. let's do some checks
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322 EXPECT_EQ(109u, sliceProcessor->slicesDicom_.size());
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323
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324 // Load the RTStruct
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325 LoadRtStructBlocking(optimizedStructLoader, rtStructInstanceId);
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326
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327 GetCTPlanes(axialPlanes, VolumeProjection_Axial, ctLoader);
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328 GetCTPlanes(coronalPlanes, VolumeProjection_Coronal, ctLoader);
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329 GetCTPlanes(sagittalPlanes, VolumeProjection_Sagittal, ctLoader);
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330 }
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331
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332 // DO NOT DELETE THOSE!
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333 OrthancStone::DicomStructureSet* normalContent = normalStructLoader->GetContent();
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334 OrthancStone::DicomStructureSet* optimizedContent = optimizedStructLoader->GetContent();
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335
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336 EXPECT_EQ(normalContent->GetStructuresCount(), optimizedContent->GetStructuresCount());
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337
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338 /*void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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339 OrthancStone::VolumeProjection projection,
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340 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)*/
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341
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342
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343 std::vector<OrthancStone::CoordinateSystem3D> allPlanes;
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344
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345 // let's gather all the possible cutting planes in a single struct
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346 for (size_t i = 0; i < axialPlanes.size(); ++i)
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347 allPlanes.push_back(axialPlanes[i]);
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348
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349 for (size_t i = 0; i < coronalPlanes.size(); ++i)
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350 allPlanes.push_back(coronalPlanes[i]);
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351
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352 for (size_t i = 0; i < sagittalPlanes.size(); ++i)
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353 allPlanes.push_back(sagittalPlanes[i]);
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354
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355 for (size_t i = 0; i < normalContent->GetStructuresCount(); ++i)
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356 {
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357 std::cout << "Testing structure (" << i << "/" << normalContent->GetStructuresCount() << ")\n";
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358 Vector structureCenter1 = normalContent->GetStructureCenter(i);
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359 const std::string& structureName1 = normalContent->GetStructureName(i);
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360 const std::string& structureInterpretation1 = normalContent->GetStructureInterpretation(i);
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361 Color structureColor1 = normalContent->GetStructureColor(i);
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362
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363 Vector structureCenter2 = optimizedContent->GetStructureCenter(i);
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364 const std::string& structureName2 = optimizedContent->GetStructureName(i);
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365 const std::string& structureInterpretation2 = optimizedContent->GetStructureInterpretation(i);
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366 Color structureColor2 = optimizedContent->GetStructureColor(i);
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367
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368 EXPECT_NEAR(structureCenter1[0], structureCenter2[0], TOLERANCE);
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369 EXPECT_NEAR(structureCenter1[1], structureCenter2[1], TOLERANCE);
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370 EXPECT_NEAR(structureCenter1[2], structureCenter2[2], TOLERANCE);
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371
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372 EXPECT_EQ(structureName1, structureName2);
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373 EXPECT_EQ(structureInterpretation1, structureInterpretation2);
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374 EXPECT_EQ(structureColor1.GetRed(), structureColor2.GetRed());
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375 EXPECT_EQ(structureColor1.GetGreen(), structureColor2.GetGreen());
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376 EXPECT_EQ(structureColor1.GetBlue(), structureColor2.GetBlue());
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377
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378 // "random" walk through the planes. Processing them all takes too long (~ 1 min)
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379 for (size_t j = 0; j < allPlanes.size(); j += 37)
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380 {
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381 const OrthancStone::CoordinateSystem3D& plane = allPlanes[j];
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382
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383 std::vector< std::pair<Point2D, Point2D> > segments1;
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384 std::vector< std::pair<Point2D, Point2D> > segments2;
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385
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386 bool ok1 = normalContent->ProjectStructure(segments1, i, plane);
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387 bool ok2 = optimizedContent->ProjectStructure(segments2, i, plane);
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388
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389 // checks here
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390 EXPECT_EQ(ok1, ok2);
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391 EXPECT_EQ(segments1.size(), segments2.size());
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392
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393 for (size_t k = 0; k < segments1.size(); ++k)
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394 {
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395 EXPECT_NEAR(segments1[k].first.x, segments2[k].first.x, TOLERANCE);
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396 EXPECT_NEAR(segments1[k].first.y, segments2[k].first.y, TOLERANCE);
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397 EXPECT_NEAR(segments1[k].second.x, segments2[k].second.x, TOLERANCE);
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398 EXPECT_NEAR(segments1[k].second.y, segments2[k].second.y, TOLERANCE);
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399 }
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400 }
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401 }
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402
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403 Exitialize(*loadersContext);
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404 }