Mercurial > hg > orthanc-stone

annotate UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp @ 1587:a1405ab3a91c

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reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 22 Oct 2020 16:28:41 +0200
parents OrthancStone/UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp@ae17c8c8838f
children 8c5f9864545f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1541
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1 /*
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2 these tests are single-threaded... no worries for old buggy compilers
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3 (I'm talking to YOU, cl.exe v100! And to your ancestors!)
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4 */
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5 static std::string& GetTestJson()
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6 {
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7 static const char* resultRaw = NULL;
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8 static std::string result;
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9 if (resultRaw == NULL)
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10 {
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11 std::stringstream sst;
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12
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13 sst << k_rtStruct_json00
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14 << k_rtStruct_json01
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15 << k_rtStruct_json02
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16 << k_rtStruct_json03
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17 << k_rtStruct_json04
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18 << k_rtStruct_json05
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19 << k_rtStruct_json06
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20 << k_rtStruct_json07
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21 << k_rtStruct_json08;
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22
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23 std::string wholeBody = sst.str();
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24 result.swap(wholeBody);
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25 resultRaw = result.c_str();
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26 }
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27 return result;
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28 }
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29
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30
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31 namespace
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32 {
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33 void Initialize(const char* orthancApiUrl, OrthancStone::ILoadersContext& loadersContext)
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34 {
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35 Orthanc::WebServiceParameters p;
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36
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37 OrthancStone::GenericLoadersContext& typedLoadersContext =
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38 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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39 // Default is http://localhost:8042
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40 // Here's how you may change it
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41 p.SetUrl(orthancApiUrl);
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42 p.SetCredentials("orthanc", "orthanc");
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43 typedLoadersContext.SetOrthancParameters(p);
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44
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45 typedLoadersContext.StartOracle();
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46 }
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47
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48 void Exitialize(OrthancStone::ILoadersContext& loadersContext)
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49 {
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50 OrthancStone::GenericLoadersContext& typedLoadersContext =
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51 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext);
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52
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53 typedLoadersContext.StopOracle();
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54 }
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55
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56
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57 #if 0
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58 class TestObserver : public ObserverBase<TestObserver>
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59 {
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60 public:
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61 TestObserver() {};
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62
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63 virtual void Handle
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64
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65 };
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66 #endif
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67
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68 }
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69
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70 TEST(StructureSet, DISABLED_StructureSetLoader_injection_feature_2020_05_10)
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71 {
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72 namespace pt = boost::posix_time;
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73
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74 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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75 Initialize("http://localhost:8042/", *loadersContext);
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76
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77 boost::shared_ptr<DicomStructureSetLoader> loader = DicomStructureSetLoader::Create(*loadersContext);
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78
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79 // replace with Orthanc ID of an uploaded RTSTRUCT instance!
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80 loader->LoadInstanceFullVisibility("72c773ac-5059f2c4-2e6a9120-4fd4bca1-45701661");
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81
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82 bool bContinue(true);
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83
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84 pt::ptime initialTime = pt::second_clock::local_time();
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85
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86 while (bContinue)
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87 {
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88 bContinue = !loader->AreStructuresReady();
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89 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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90
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91 {
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92 pt::ptime nowTime = pt::second_clock::local_time();
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93 pt::time_duration diff = nowTime - initialTime;
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94 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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95 std::cout << seconds << " seconds elapsed...\n";
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96 if (seconds > 30)
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97 {
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98 std::cout << "More than 30 seconds elapsed... Aborting test :(\n";
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99 //GTEST_FATAL_FAILURE_("More than 30 seconds elapsed... Aborting test :(");
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100 //bContinue = false;
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101 }
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102 }
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103 }
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104 }
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105
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106 class SliceProcessor :
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107 public OrthancStone::OrthancSeriesVolumeProgressiveLoader::ISlicePostProcessor,
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108 public OrthancStone::DicomStructureSetLoader::IInstanceLookupHandler
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109 {
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110 public:
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111 SliceProcessor(OrthancStone::DicomStructureSetLoader& structLoader) : structLoader_(structLoader)
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112 {
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113 }
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114
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115 virtual void ProcessCTDicomSlice(const Orthanc::DicomMap& instance) ORTHANC_OVERRIDE
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116 {
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117 std::string sopInstanceUid;
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118 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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119 {
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120 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing SOPInstanceUID in a DICOM instance");
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121 }
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122 slicesDicom_[sopInstanceUid] = boost::shared_ptr<DicomMap>(instance.Clone());
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123 }
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124
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125 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE
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126 {
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127 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin();
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128 it != nonEmptyInstances.end();
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129 ++it)
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130 {
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131 const std::string nonEmptyInstance = *it;
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132 if (slicesDicom_.find(nonEmptyInstance) == slicesDicom_.end())
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133 {
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134 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Referenced SOPInstanceUID not found in CT");
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135 }
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136 boost::shared_ptr<Orthanc::DicomMap> instance = slicesDicom_[nonEmptyInstance];
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137 structLoader_.AddReferencedSlice(*instance);
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138 }
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139 }
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140
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141 OrthancStone::DicomStructureSetLoader& structLoader_;
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142 std::map<std::string, boost::shared_ptr<Orthanc::DicomMap> > slicesDicom_;
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143 };
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144
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145 void LoadCtSeriesBlocking(boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader, std::string seriesId)
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146 {
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147 namespace pt = boost::posix_time;
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148
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149 // Load the CT
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150 ctLoader->LoadSeries(seriesId);
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151
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152 // Wait for CT to be loaded
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153 pt::ptime initialTime = pt::second_clock::local_time();
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154 {
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155 bool bContinue(true);
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156 while (bContinue)
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157 {
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158 bContinue = !ctLoader->IsVolumeImageReadyInHighQuality();
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159 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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160
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161 {
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162 pt::ptime nowTime = pt::second_clock::local_time();
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163 pt::time_duration diff = nowTime - initialTime;
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164 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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165 std::cout << seconds << " seconds elapsed...\n";
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166 if (seconds > 30)
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167 {
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168 const char* msg = "More than 30 seconds elapsed when waiting for CT... Aborting test :(\n";
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169 GTEST_FATAL_FAILURE_(msg);
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170 bContinue = false;
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171 }
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172 }
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173 }
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174 }
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175 }
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176
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177
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178 /**
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179 Will fill planes
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180 */
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181 void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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182 OrthancStone::VolumeProjection projection,
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183 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)
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184 {
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185 planes.clear(); // inefficient : we don't care
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186
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187 const VolumeImageGeometry& geometry = ctLoader->GetImageGeometry();
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188 const unsigned int depth = geometry.GetProjectionDepth(projection);
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189
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190 planes.resize(depth);
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191
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192 for (unsigned int z = 0; z < depth; z++)
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193 {
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194 planes[z] = geometry.GetProjectionSlice(projection, z);
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195 }
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196 }
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197
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198 void LoadRtStructBlocking(boost::shared_ptr<OrthancStone::DicomStructureSetLoader> structLoader, std::string instanceId)
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199 {
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200 namespace pt = boost::posix_time;
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201
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202 // Load RTSTRUCT
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203 structLoader->LoadInstanceFullVisibility(instanceId);
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204
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205 pt::ptime initialTime = pt::second_clock::local_time();
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206
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207 // Wait for the loading process to complete
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208 {
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209 bool bContinue(true);
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210 while (bContinue)
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211 {
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212 bContinue = !structLoader->AreStructuresReady();
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213 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000));
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214
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215 {
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216 pt::ptime nowTime = pt::second_clock::local_time();
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217 pt::time_duration diff = nowTime - initialTime;
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218 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001;
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219 std::cout << seconds << " seconds elapsed...\n";
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220 if (seconds > 30)
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221 {
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222 const char* msg = "More than 30 seconds elapsed when waiting for RTSTRUCT... Aborting test :(\n";
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223 GTEST_FATAL_FAILURE_(msg);
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224 bContinue = false;
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225 }
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226 }
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227 }
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228 }
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229 }
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230
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231 TEST(StructureSet, DISABLED_Integration_Compound_CT_Struct_Loading)
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232 {
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233 const double TOLERANCE = 0.0000001;
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234
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235 // create loaders context
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236 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1));
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237 Initialize("http://localhost:8042/", *loadersContext);
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238
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239 const char* ctSeriesId = "a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa";
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240 const char* rtStructInstanceId = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9";
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241
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242 // we'll compare normal loading and optimized loading with SliceProcessor to store the dicom
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243
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244 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> normalStructLoader;
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245 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> optimizedStructLoader;
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246
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247 {
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248 // Create the CT volume
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249 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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250
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251 // Create CT loader
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252 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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253 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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254
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255 // Create struct loader
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256 normalStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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257
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258 // Load the CT
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259 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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260
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261 const OrthancStone::VolumeImageGeometry& imageGeometry = ctLoader->GetImageGeometry();
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262 unsigned int width = imageGeometry.GetWidth();
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263 EXPECT_EQ(512u, width);
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264 unsigned int height = imageGeometry.GetHeight();
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265 EXPECT_EQ(512u, height);
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266 unsigned int depth = imageGeometry.GetDepth();
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267 EXPECT_EQ(109u, depth);
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268
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269 // Load the RTStruct
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270 LoadRtStructBlocking(normalStructLoader, rtStructInstanceId);
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271 }
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272
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273 std::vector<OrthancStone::CoordinateSystem3D> axialPlanes;
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274 std::vector<OrthancStone::CoordinateSystem3D> coronalPlanes;
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275 std::vector<OrthancStone::CoordinateSystem3D> sagittalPlanes;
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276
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277 {
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278 // Create the CT volume
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279 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>();
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280
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281 // Create CT loader
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282 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader =
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283 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume);
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284
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285 // Create struct loader
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286 optimizedStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext);
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287
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288 // create the slice processor / instance lookup
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289 boost::shared_ptr<SliceProcessor> sliceProcessor(new SliceProcessor(*optimizedStructLoader));
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290
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291 // Inject it into CT loader
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292 ctLoader->SetDicomSlicePostProcessor(sliceProcessor);
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293
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294 // Inject it into RTSTRUCT loader
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295 optimizedStructLoader->SetInstanceLookupHandler(sliceProcessor);
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296
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297 // Load the CT
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298 LoadCtSeriesBlocking(ctLoader, ctSeriesId);
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299
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300 // now, the slices are collected. let's do some checks
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301 EXPECT_EQ(109u, sliceProcessor->slicesDicom_.size());
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302
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303 // Load the RTStruct
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304 LoadRtStructBlocking(optimizedStructLoader, rtStructInstanceId);
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305
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306 GetCTPlanes(axialPlanes, VolumeProjection_Axial, ctLoader);
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307 GetCTPlanes(coronalPlanes, VolumeProjection_Coronal, ctLoader);
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308 GetCTPlanes(sagittalPlanes, VolumeProjection_Sagittal, ctLoader);
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309 }
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310
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311 // DO NOT DELETE THOSE!
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312 OrthancStone::DicomStructureSet* normalContent = normalStructLoader->GetContent();
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313 OrthancStone::DicomStructureSet* optimizedContent = optimizedStructLoader->GetContent();
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314
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315 EXPECT_EQ(normalContent->GetStructuresCount(), optimizedContent->GetStructuresCount());
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316
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317 /*void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes,
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318 OrthancStone::VolumeProjection projection,
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319 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)*/
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320
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321
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322 std::vector<OrthancStone::CoordinateSystem3D> allPlanes;
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323
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324 // let's gather all the possible cutting planes in a single struct
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325 for (size_t i = 0; i < axialPlanes.size(); ++i)
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326 allPlanes.push_back(axialPlanes[i]);
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327
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328 for (size_t i = 0; i < coronalPlanes.size(); ++i)
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329 allPlanes.push_back(coronalPlanes[i]);
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330
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331 for (size_t i = 0; i < sagittalPlanes.size(); ++i)
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332 allPlanes.push_back(sagittalPlanes[i]);
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333
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334 for (size_t i = 0; i < normalContent->GetStructuresCount(); ++i)
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335 {
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336 std::cout << "Testing structure (" << i << "/" << normalContent->GetStructuresCount() << ")\n";
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337 Vector structureCenter1 = normalContent->GetStructureCenter(i);
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338 const std::string& structureName1 = normalContent->GetStructureName(i);
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339 const std::string& structureInterpretation1 = normalContent->GetStructureInterpretation(i);
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340 Color structureColor1 = normalContent->GetStructureColor(i);
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341
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342 Vector structureCenter2 = optimizedContent->GetStructureCenter(i);
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343 const std::string& structureName2 = optimizedContent->GetStructureName(i);
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344 const std::string& structureInterpretation2 = optimizedContent->GetStructureInterpretation(i);
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345 Color structureColor2 = optimizedContent->GetStructureColor(i);
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346
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347 EXPECT_NEAR(structureCenter1[0], structureCenter2[0], TOLERANCE);
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348 EXPECT_NEAR(structureCenter1[1], structureCenter2[1], TOLERANCE);
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349 EXPECT_NEAR(structureCenter1[2], structureCenter2[2], TOLERANCE);
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350
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351 EXPECT_EQ(structureName1, structureName2);
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352 EXPECT_EQ(structureInterpretation1, structureInterpretation2);
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353 EXPECT_EQ(structureColor1.GetRed(), structureColor2.GetRed());
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354 EXPECT_EQ(structureColor1.GetGreen(), structureColor2.GetGreen());
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355 EXPECT_EQ(structureColor1.GetBlue(), structureColor2.GetBlue());
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356
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357 // "random" walk through the planes. Processing them all takes too long (~ 1 min)
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358 for (size_t j = 0; j < allPlanes.size(); j += 37)
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359 {
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360 const OrthancStone::CoordinateSystem3D& plane = allPlanes[j];
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361
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362 std::vector< std::pair<Point2D, Point2D> > segments1;
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363 std::vector< std::pair<Point2D, Point2D> > segments2;
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364
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365 bool ok1 = normalContent->ProjectStructure(segments1, i, plane);
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366 bool ok2 = optimizedContent->ProjectStructure(segments2, i, plane);
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367
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368 // checks here
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369 EXPECT_EQ(ok1, ok2);
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370 EXPECT_EQ(segments1.size(), segments2.size());
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371
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372 for (size_t k = 0; k < segments1.size(); ++k)
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373 {
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374 EXPECT_NEAR(segments1[k].first.x, segments2[k].first.x, TOLERANCE);
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375 EXPECT_NEAR(segments1[k].first.y, segments2[k].first.y, TOLERANCE);
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376 EXPECT_NEAR(segments1[k].second.x, segments2[k].second.x, TOLERANCE);
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377 EXPECT_NEAR(segments1[k].second.y, segments2[k].second.y, TOLERANCE);
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378 }
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379 }
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380 }
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381
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382 Exitialize(*loadersContext);
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383 }