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annotate OrthancStone/Sources/Toolbox/SortedFrames.cpp @ 1649:d77618883551

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verification of FrameOfReferenceUID in reference lines
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 12 Nov 2020 20:56:04 +0100
parents 4a43106bc122
children 9ac2a65d4172
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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1 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #include "SortedFrames.h"
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24
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25 #include "GeometryToolbox.h"
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26
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27 #include <Logging.h>
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28 #include <OrthancException.h>
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29 #include <Toolbox.h>
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30
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31 namespace OrthancStone
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32 {
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33 SortedFrames::Frame::Frame(const DicomInstanceParameters& instance,
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34 unsigned int frameNumber) :
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35 instance_(&instance),
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36 frameNumber_(frameNumber)
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37 {
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38 if (frameNumber >= instance.GetNumberOfFrames())
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39 {
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40 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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41 }
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42 }
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44
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45 double SortedFrames::Frame::ComputeDistance(const Vector& p) const
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46 {
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47 const CoordinateSystem3D& plane = instance_->GetFrameGeometry(frameNumber_);
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48 return plane.ComputeDistance(p);
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49 }
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50
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51
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52 const DicomInstanceParameters& SortedFrames::GetInstance(size_t instanceIndex) const
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53 {
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54 if (instanceIndex >= instances_.size())
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55 {
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56 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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57 }
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58 else
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59 {
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60 assert(instances_[instanceIndex] != NULL);
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61 return *instances_[instanceIndex];
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62 }
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63 }
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65
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66 const SortedFrames::Frame& SortedFrames::GetFrame(size_t frameIndex) const
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67 {
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68 if (!sorted_)
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69 {
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70 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
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71 "Sort() has not been called");
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72 }
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73 if (frameIndex >= frames_.size())
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74 {
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75 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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76 }
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77 else
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78 {
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79 return frames_[frameIndex];
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80 }
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81 }
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83
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84 void SortedFrames::Clear()
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85 {
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86 for (size_t i = 0; i < instances_.size(); i++)
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87 {
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88 assert(instances_[i] != NULL);
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89 delete instances_[i];
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90 }
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91
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92 studyInstanceUid_.clear();
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93 seriesInstanceUid_.clear();
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94 frames_.clear();
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95
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96 instancesIndex_.clear();
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97 framesIndex_.clear();
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98
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99 sorted_ = true;
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100 }
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101
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102
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103 void SortedFrames::AddInstance(const Orthanc::DicomMap& tags)
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104 {
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105 std::unique_ptr<DicomInstanceParameters> instance(new DicomInstanceParameters(tags));
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106
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107 if (instances_.empty())
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108 {
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109 studyInstanceUid_ = instance->GetStudyInstanceUid();
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110 seriesInstanceUid_ = instance->GetSeriesInstanceUid();
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111 }
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112 else
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113 {
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114 if (studyInstanceUid_ != instance->GetStudyInstanceUid() ||
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115 seriesInstanceUid_ != instance->GetSeriesInstanceUid())
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116 {
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117 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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118 "Mixing instances from different series");
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119 }
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120 }
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121
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122 if (instancesIndex_.find(instance->GetSopInstanceUid()) != instancesIndex_.end())
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123 {
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124 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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125 "Cannot register twice the same SOP Instance UID");
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126 }
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127
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128 instancesIndex_[instance->GetSopInstanceUid()] = instances_.size();
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129
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130 instances_.push_back(instance.release());
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131 sorted_ = false;
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132 frames_.clear();
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133 }
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134
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135
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136 bool SortedFrames::LookupSopInstanceUid(size_t& instanceIndex,
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137 const std::string& sopInstanceUid) const
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138 {
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139 InstancesIndex::const_iterator found = instancesIndex_.find(sopInstanceUid);
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140
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141 if (found == instancesIndex_.end())
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142 {
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143 return false;
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144 }
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145 else
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146 {
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147 instanceIndex = found->second;
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148 return true;
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149 }
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150 }
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151
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152
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153 void SortedFrames::AddFramesOfInstance(std::set<size_t>& remainingInstances,
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154 size_t instanceIndex)
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155 {
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156 assert(instances_[instanceIndex] != NULL);
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157 const DicomInstanceParameters& instance = *instances_[instanceIndex];
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158
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159 for (unsigned int i = 0; i < instance.GetNumberOfFrames(); i++)
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160 {
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161 framesIndex_[std::make_pair(instance.GetSopInstanceUid(), i)] = frames_.size();
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162 frames_.push_back(Frame(instance, i));
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163 }
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164
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165 assert(remainingInstances.find(instanceIndex) != remainingInstances.end());
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166 remainingInstances.erase(instanceIndex);
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167 }
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168
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169
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170 namespace
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171 {
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172 template<typename T>
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173 class SortableItem
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174 {
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175 private:
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176 T value_;
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177 size_t instanceIndex_;
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178 std::string sopInstanceUid_;
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179
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180 public:
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181 SortableItem(const T& value,
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182 size_t instanceIndex,
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183 const std::string& sopInstanceUid) :
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184 value_(value),
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185 instanceIndex_(instanceIndex),
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186 sopInstanceUid_(sopInstanceUid)
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187 {
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188 }
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189
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190 size_t GetInstanceIndex() const
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191 {
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192 return instanceIndex_;
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193 }
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194
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195 bool operator< (const SortableItem& other) const
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196 {
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197 return (value_ < other.value_ ||
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198 (value_ == other.value_ &&
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199 sopInstanceUid_ < other.sopInstanceUid_));
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200 }
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201 };
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202 }
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203
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204
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205 void SortedFrames::SortUsingIntegerTag(std::set<size_t>& remainingInstances,
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206 const Orthanc::DicomTag& tag)
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207 {
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208 std::vector< SortableItem<int32_t> > items;
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209 items.reserve(remainingInstances.size());
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210
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211 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
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212 it != remainingInstances.end(); ++it)
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213 {
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214 assert(instances_[*it] != NULL);
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215 const DicomInstanceParameters& instance = *instances_[*it];
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216
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217 int32_t value;
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218 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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219 if (instance.GetTags().ParseInteger32(value, tag) &&
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220 instance.GetTags().LookupStringValue(
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221 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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222 {
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223 items.push_back(SortableItem<int32_t>(value, *it, sopInstanceUid));
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224 }
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225 }
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226
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227 std::sort(items.begin(), items.end());
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228
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229 for (size_t i = 0; i < items.size(); i++)
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230 {
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231 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
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232 }
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233 }
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234
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235
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236 void SortedFrames::SortUsingSopInstanceUid(std::set<size_t>& remainingInstances)
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237 {
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238 std::vector<SortableItem<int32_t> > items;
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239 items.reserve(remainingInstances.size());
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240
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241 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
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242 it != remainingInstances.end(); ++it)
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243 {
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244 assert(instances_[*it] != NULL);
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245 const DicomInstanceParameters& instance = *instances_[*it];
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246
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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247 std::string sopInstanceUid;
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248 if (instance.GetTags().LookupStringValue(
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249 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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250 {
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251 items.push_back(SortableItem<int32_t>(0 /* arbitrary value */, *it, sopInstanceUid));
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252 }
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253 }
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254
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255 std::sort(items.begin(), items.end());
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256
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diff changeset
257 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 void SortedFrames::SortUsing3DLocation(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 * Compute the mean of the normal vectors, using the recursive
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 * formula for arithmetic means for numerical stability.
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 * https://diego.assencio.com/?index=c34d06f4f4de2375658ed41f70177d59
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 **/
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 Vector meanNormal;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 LinearAlgebra::AssignVector(meanNormal, 0, 0, 0);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 unsigned int n = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 assert(instances_[*it] != NULL);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
281 const DicomInstanceParameters& instance = *instances_[*it];
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
283 if (instance.GetGeometry().IsValid())
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 n += 1;
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
286 meanNormal += (instance.GetGeometry().GetNormal() - meanNormal) / static_cast<float>(n);
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 std::vector<SortableItem<float> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 items.reserve(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 assert(instances_[*it] != NULL);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
297 const DicomInstanceParameters& instance = *instances_[*it];
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
298
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 std::string sopInstanceUid;
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
300 if (instance.GetGeometry().IsValid() &&
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 {
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
304 double p = LinearAlgebra::DotProduct(meanNormal, instance.GetGeometry().GetOrigin());
1605
b3c439d96d3e warning fix
Benjamin Golinvaux <bgo@osimis.io>
parents: 1602
diff changeset
305 items.push_back(SortableItem<float>(static_cast<float>(p), *it, sopInstanceUid));
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 assert(items.size() <= n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 size_t SortedFrames::GetFramesCount() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 if (sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 return frames_.size();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 "Sort() has not been called");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
1631
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
334 CoordinateSystem3D SortedFrames::GetFrameGeometry(size_t frameIndex) const
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
335 {
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
336 const Frame& frame = GetFrame(frameIndex);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
337 return frame.GetInstance().GetFrameGeometry(frame.GetFrameNumberInInstance());
1631
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
338 }
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
339
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
340
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
341 bool SortedFrames::LookupFrame(size_t& frameIndex,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
342 const std::string& sopInstanceUid,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
343 unsigned int frameNumber) const
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
344 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
345 if (sorted_)
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
346 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
347 FramesIndex::const_iterator found = framesIndex_.find(
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
348 std::make_pair(sopInstanceUid, frameNumber));
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
349
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
350 if (found == framesIndex_.end())
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
351 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
352 return false;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
353 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
354 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
355 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
356 frameIndex = found->second;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
357 return true;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
358 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
359 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
360 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
361 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
362 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
363 "Sort() has not been called");
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
364 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
365 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
366
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
367
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 void SortedFrames::Sort()
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 if (!sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 size_t totalFrames = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 std::set<size_t> remainingInstances;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 totalFrames += instances_[i]->GetNumberOfFrames();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 remainingInstances.insert(i);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 frames_.reserve(totalFrames);
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
385 framesIndex_.clear();
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_INSTANCE_NUMBER); // VR is "IS"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_IMAGE_INDEX); // VR is "US"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 SortUsing3DLocation(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 SortUsingSopInstanceUid(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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391
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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392 // The following could in theory happen if several instances
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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393 // have the same SOPInstanceUID, no ordering is available
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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394 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
1571
85e117739eca cppcheck
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parents: 1512
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395 it != remainingInstances.end(); ++it)
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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396 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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397 AddFramesOfInstance(remainingInstances, *it);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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398 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
400 if (frames_.size() != totalFrames ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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401 !remainingInstances.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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403 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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404 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 sorted_ = true;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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407 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 }
1648
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
409
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
410
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parents: 1643
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411 bool SortedFrames::FindClosestFrame(size_t& frameIndex,
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412 const Vector& point,
4a43106bc122 cross-hair starts to work
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parents: 1643
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413 double maximumDistance) const
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parents: 1643
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414 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
415 if (sorted_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
416 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
417 if (frames_.empty())
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
418 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
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419 return false;
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
420 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
421 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
422 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
423 frameIndex = 0;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
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424 double closestDistance = frames_[0].ComputeDistance(point);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
425
4a43106bc122 cross-hair starts to work
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parents: 1643
diff changeset
426 for (size_t i = 1; i < frames_.size(); i++)
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
427 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
428 double d = frames_[i].ComputeDistance(point);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
429 if (d < closestDistance)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
430 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
431 frameIndex = i;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
432 closestDistance = d;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
433 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
434 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
435
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
436 return (closestDistance <= maximumDistance);
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
437 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
438 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
439 else
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
440 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
441 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
442 "Sort() has not been called");
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
443 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
444 }
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 }