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annotate OrthancStone/Sources/Toolbox/SortedFrames.cpp @ 1599:73cd85d7da6a

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SortedFrames::LookupSopInstanceUid()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 28 Oct 2020 10:55:45 +0100
parents 8563ea5d8ae4
children b253b79906fa
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fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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1 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "SortedFrames.h"
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24
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25 #include "GeometryToolbox.h"
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27 #include <OrthancException.h>
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28 #include <Toolbox.h>
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29
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30 namespace OrthancStone
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31 {
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32 SortedFrames::Instance::Instance(const Orthanc::DicomMap& tags)
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33 {
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34 tags_.Assign(tags);
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35
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36 if (!tags.LookupStringValue(sopInstanceUid_, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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37 {
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38 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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39 }
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40
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41 uint32_t tmp;
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42 if (tags.ParseUnsignedInteger32(tmp, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES))
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43 {
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44 numberOfFrames_ = tmp;
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45 }
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46 else
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47 {
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48 numberOfFrames_ = 1;
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49 }
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50
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51 std::string photometric;
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52 if (tags.LookupStringValue(photometric, Orthanc::DICOM_TAG_PHOTOMETRIC_INTERPRETATION, false))
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53 {
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54 Orthanc::Toolbox::StripSpaces(photometric);
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55 monochrome1_ = (photometric == "MONOCHROME1");
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56 }
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57 else
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58 {
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59 monochrome1_ = false;
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60 }
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61
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62 hasPosition_ = (
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63 LinearAlgebra::ParseVector(position_, tags, Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT) &&
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64 position_.size() == 3 &&
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65 GeometryToolbox::ComputeNormal(normal_, tags));
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66 }
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67
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68
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69 const Vector& SortedFrames::Instance::GetNormal() const
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70 {
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71 if (hasPosition_)
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72 {
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73 return normal_;
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74 }
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75 else
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76 {
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77 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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78 }
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79 }
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80
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81
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82 const Vector& SortedFrames::Instance::GetPosition() const
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83 {
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84 if (hasPosition_)
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85 {
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86 return position_;
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87 }
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88 else
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89 {
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90 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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91 }
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92 }
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93
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94
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95 SortedFrames::Frame::Frame(const Instance& instance,
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96 unsigned int frameIndex) :
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97 instance_(&instance),
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98 frameIndex_(frameIndex)
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99 {
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100 if (frameIndex >= instance.GetNumberOfFrames())
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101 {
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102 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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103 }
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104 }
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105
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106
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107 const SortedFrames::Instance& SortedFrames::GetInstance(size_t index) const
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108 {
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109 if (index >= instances_.size())
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110 {
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111 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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112 }
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113 else
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114 {
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115 assert(instances_[index] != NULL);
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116 return *instances_[index];
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117 }
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118 }
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119
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120
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121 const SortedFrames::Frame& SortedFrames::GetFrame(size_t index) const
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122 {
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123 if (!sorted_)
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124 {
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125 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
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126 "Sort() has not been called");
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127 }
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128 if (index >= frames_.size())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 return frames_[index];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138
1479
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
139 void SortedFrames::Clear()
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 delete instances_[i];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 }
1479
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
146
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
147 instancesIndex_.clear();
1479
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
148 studyInstanceUid_.clear();
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
149 seriesInstanceUid_.clear();
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
150 frames_.clear();
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1478
diff changeset
151 sorted_ = true;
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 void SortedFrames::AddInstance(const Orthanc::DicomMap& tags)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 std::unique_ptr<Instance> instance(new Instance(tags));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
159 std::string studyInstanceUid, seriesInstanceUid, sopInstanceUid;
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 if (!tags.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) ||
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
161 !tags.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false) ||
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
162 !tags.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167 if (instances_.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169 studyInstanceUid_ = studyInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 seriesInstanceUid_ = seriesInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 if (studyInstanceUid_ != studyInstanceUid ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 seriesInstanceUid_ != seriesInstanceUid)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 "Mixing instances from different series");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
182 if (instancesIndex_.find(sopInstanceUid) != instancesIndex_.end())
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
183 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
184 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
185 "Cannot register twice the same SOP Instance UID");
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
186 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
187
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
188 instancesIndex_[sopInstanceUid] = instances_.size();
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
189
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 instances_.push_back(instance.release());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 sorted_ = false;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
196 bool SortedFrames::LookupSopInstanceUid(size_t& instanceIndex,
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
197 const std::string& sopInstanceUid) const
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
198 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
199 InstancesIndex::const_iterator found = instancesIndex_.find(sopInstanceUid);
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
200
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
201 if (found == instancesIndex_.end())
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
202 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
203 return false;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
204 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
205 else
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
206 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
207 instanceIndex = found->second;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
208 return true;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
209 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
210 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
211
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
212
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213 void SortedFrames::AddFramesOfInstance(std::set<size_t>& remainingInstances,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 size_t index)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 assert(instances_[index] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 const Instance& instance = *instances_[index];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 for (unsigned int i = 0; i < instance.GetNumberOfFrames(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 frames_.push_back(Frame(instance, i));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 assert(remainingInstances.find(index) != remainingInstances.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225 remainingInstances.erase(index);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 namespace
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 template<typename T>
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232 class SortableItem
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234 private:
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 T value_;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 size_t instance_;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 std::string sopInstanceUid_;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 public:
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 SortableItem(const T& value,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 size_t instance,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 const std::string& sopInstanceUid) :
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 value_(value),
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 instance_(instance),
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 sopInstanceUid_(sopInstanceUid)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 size_t GetInstanceIndex() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 return instance_;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 bool operator< (const SortableItem& other) const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 return (value_ < other.value_ ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 (value_ == other.value_ &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 sopInstanceUid_ < other.sopInstanceUid_));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 };
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 void SortedFrames::SortUsingIntegerTag(std::set<size_t>& remainingInstances,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 const Orthanc::DicomTag& tag)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 std::vector< SortableItem<int32_t> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 items.reserve(remainingInstances.size());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 int32_t value;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 if (instance.GetTags().ParseInteger32(value, tag) &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 items.push_back(SortableItem<int32_t>(value, *it, sopInstanceUid));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 void SortedFrames::SortUsingSopInstanceUid(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 std::vector<SortableItem<int32_t> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 items.reserve(remainingInstances.size());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 if (instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 items.push_back(SortableItem<int32_t>(0 /* arbitrary value */, *it, sopInstanceUid));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 void SortedFrames::SortUsing3DLocation(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 * Compute the mean of the normal vectors, using the recursive
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 * formula for arithmetic means for numerical stability.
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 * https://diego.assencio.com/?index=c34d06f4f4de2375658ed41f70177d59
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 **/
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 Vector meanNormal;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 LinearAlgebra::AssignVector(meanNormal, 0, 0, 0);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 unsigned int n = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 if (instance.HasPosition())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 n += 1;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 meanNormal += (instance.GetNormal() - meanNormal) / static_cast<float>(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 std::vector<SortableItem<float> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 items.reserve(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 if (instance.HasPosition() &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 double p = LinearAlgebra::DotProduct(meanNormal, instance.GetPosition());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 items.push_back(SortableItem<float>(p, *it, sopInstanceUid));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 assert(items.size() <= n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 size_t SortedFrames::GetFramesCount() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 if (sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 return frames_.size();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 "Sort() has not been called");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 void SortedFrames::Sort()
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 if (!sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 size_t totalFrames = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 std::set<size_t> remainingInstances;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 totalFrames += instances_[i]->GetNumberOfFrames();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 remainingInstances.insert(i);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 frames_.reserve(totalFrames);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_INSTANCE_NUMBER); // VR is "IS"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_IMAGE_INDEX); // VR is "US"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 SortUsing3DLocation(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 SortUsingSopInstanceUid(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 // The following could in theory happen if several instances
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 // have the same SOPInstanceUID, no ordering is available
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
419 it != remainingInstances.end(); ++it)
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 AddFramesOfInstance(remainingInstances, *it);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 if (frames_.size() != totalFrames ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 !remainingInstances.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 sorted_ = true;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 }