Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.h @ 627:b7fd0471281c am-dev

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fix CodeGeneration unit tests
author Alain Mazy <alain@mazy.be>
date Wed, 08 May 2019 10:51:41 +0200
parents b70e9be013e4
children 5aa728500586
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "CoordinateSystem3D.h"
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25 #include "Extent2D.h"
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27 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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29 #include <list>
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31 namespace OrthancStone
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32 {
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33 class DicomStructureSet : public boost::noncopyable
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34 {
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35 public:
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36 typedef std::pair<double, double> PolygonPoint;
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37
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38 private:
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39 struct ReferencedSlice
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40 {
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41 std::string seriesInstanceUid_;
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42 CoordinateSystem3D geometry_;
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43 double thickness_;
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44
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45 ReferencedSlice()
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46 {
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47 }
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48
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49 ReferencedSlice(const std::string& seriesInstanceUid,
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50 const CoordinateSystem3D& geometry,
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51 double thickness) :
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52 seriesInstanceUid_(seriesInstanceUid),
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53 geometry_(geometry),
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54 thickness_(thickness)
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55 {
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56 }
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57 };
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58
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59 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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61 typedef std::vector<Vector> Points;
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63 class Polygon
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64 {
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65 private:
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66 std::string sopInstanceUid_;
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67 bool hasSlice_;
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68 CoordinateSystem3D geometry_;
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69 double projectionAlongNormal_;
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70 double sliceThickness_; // In millimeters
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71 Points points_;
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72 Extent2D extent_;
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74 void CheckPoint(const Vector& v);
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75
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76 public:
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77 Polygon(const std::string& sopInstanceUid) :
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78 sopInstanceUid_(sopInstanceUid),
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79 hasSlice_(false)
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80 {
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81 }
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82
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83 void Reserve(size_t n)
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84 {
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85 points_.reserve(n);
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86 }
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87
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88 void AddPoint(const Vector& v);
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89
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90 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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91
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92 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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93
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94 const std::string& GetSopInstanceUid() const
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95 {
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96 return sopInstanceUid_;
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97 }
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98
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99 const Points& GetPoints() const
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100 {
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101 return points_;
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102 }
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103
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104 double GetSliceThickness() const
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105 {
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106 return sliceThickness_;
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107 }
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108
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109 bool Project(double& x1,
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110 double& y1,
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111 double& x2,
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112 double& y2,
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113 const CoordinateSystem3D& slice) const;
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114 };
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115
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116 typedef std::list<Polygon> Polygons;
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117
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118 struct Structure
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119 {
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120 std::string name_;
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121 std::string interpretation_;
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122 Polygons polygons_;
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123 uint8_t red_;
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124 uint8_t green_;
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125 uint8_t blue_;
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126 };
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127
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128 typedef std::vector<Structure> Structures;
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129
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130 Structures structures_;
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131 ReferencedSlices referencedSlices_;
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133 const Structure& GetStructure(size_t index) const;
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135 Structure& GetStructure(size_t index);
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136
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137 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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138 Structure& structure,
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139 const CoordinateSystem3D& slice);
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141 public:
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142 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance);
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143
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144 size_t GetStructureCount() const
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145 {
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146 return structures_.size();
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147 }
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149 Vector GetStructureCenter(size_t index) const;
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150
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151 const std::string& GetStructureName(size_t index) const;
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152
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153 const std::string& GetStructureInterpretation(size_t index) const;
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154
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155 void GetStructureColor(uint8_t& red,
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156 uint8_t& green,
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157 uint8_t& blue,
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158 size_t index) const;
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159
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160 void GetReferencedInstances(std::set<std::string>& instances);
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161
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162 void AddReferencedSlice(const std::string& sopInstanceUid,
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163 const std::string& seriesInstanceUid,
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164 const CoordinateSystem3D& geometry,
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165 double thickness);
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166
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167 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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168
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169 void CheckReferencedSlices();
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170
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171 Vector GetNormal() const;
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172
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173 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc,
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174 const std::string& instanceId);
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175
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176 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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177 size_t index,
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178 const CoordinateSystem3D& slice)
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179 {
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180 return ProjectStructure(polygons, GetStructure(index), slice);
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181 }
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182 };
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183 }