annotate Framework/Toolbox/VolumeImageGeometry.h @ 689:93a8949a1ef7

VolumeImageGeometry::DetectSlice()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 16 May 2019 18:33:57 +0200
parents 7719eb852dd5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
684
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #pragma once
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "../StoneEnumerations.h"
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include "CoordinateSystem3D.h"
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 namespace OrthancStone
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 class VolumeImageGeometry
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 private:
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 unsigned int width_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 unsigned int height_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 unsigned int depth_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 CoordinateSystem3D axialGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 CoordinateSystem3D coronalGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 CoordinateSystem3D sagittalGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 Vector voxelDimensions_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 Matrix transform_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 Matrix transformInverse_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 void Invalidate();
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 public:
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 VolumeImageGeometry();
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 unsigned int GetWidth() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 return width_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 unsigned int GetHeight() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 return height_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 unsigned int GetDepth() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 return depth_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 const CoordinateSystem3D& GetAxialGeometry() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 return axialGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 const CoordinateSystem3D& GetCoronalGeometry() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 return coronalGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 const CoordinateSystem3D& GetSagittalGeometry() const
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 {
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 return sagittalGeometry_;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 }
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76
689
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
77 const CoordinateSystem3D& GetProjectionGeometry(VolumeProjection projection) const;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
78
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
79 const Matrix& GetTransform() const
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
80 {
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
81 return transform_;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
82 }
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
83
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
84 const Matrix& GetTransformInverse() const
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
85 {
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
86 return transformInverse_;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
87 }
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
88
684
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 void SetSize(unsigned int width,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 unsigned int height,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 unsigned int depth);
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 // Set the geometry of the first axial slice (i.e. the one whose
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 // depth == 0)
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 void SetAxialGeometry(const CoordinateSystem3D& geometry);
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 void SetVoxelDimensions(double x,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 double y,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 double z);
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 Vector GetVoxelDimensions(VolumeProjection projection) const;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
689
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
103 unsigned int GetProjectionWidth(VolumeProjection projection) const;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
104
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
105 unsigned int GetProjectionHeight(VolumeProjection projection) const;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
106
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
107 unsigned int GetProjectionDepth(VolumeProjection projection) const;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
108
684
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 // Get the 3D position of a point in the volume, where x, y and z
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 // lie in the [0;1] range
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 Vector GetCoordinates(float x,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 float y,
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 float z) const;
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 bool DetectProjection(VolumeProjection& projection,
689
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
116 const Vector& planeNormal) const;
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
117
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
118 bool DetectSlice(VolumeProjection& projection,
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
119 unsigned int& slice,
93a8949a1ef7 VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 684
diff changeset
120 const CoordinateSystem3D& plane) const;
684
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 };
7719eb852dd5 new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 }