Mercurial > hg > orthanc-stone
annotate Framework/Volumes/VolumeImageGeometry.h @ 844:84cd55245e2d
Merge
author | Benjamin Golinvaux <bgo@osimis.io> |
---|---|
date | Fri, 14 Jun 2019 12:16:38 +0200 |
parents | ffec76a5f7eb |
children | 32eaf4929b08 |
rev | line source |
---|---|
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1 /** |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2 * Stone of Orthanc |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
6 * |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
7 * This program is free software: you can redistribute it and/or |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
8 * modify it under the terms of the GNU Affero General Public License |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
9 * as published by the Free Software Foundation, either version 3 of |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
10 * the License, or (at your option) any later version. |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
11 * |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
12 * This program is distributed in the hope that it will be useful, but |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
15 * Affero General Public License for more details. |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
16 * |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
17 * You should have received a copy of the GNU Affero General Public License |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
19 **/ |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
20 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
21 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
22 #pragma once |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
23 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
24 #include "../StoneEnumerations.h" |
742
fa5febe0f0c2
moved OrientedBoundingBox in the Volumes folder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
25 #include "../Toolbox/CoordinateSystem3D.h" |
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
26 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
27 namespace OrthancStone |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
28 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
29 class VolumeImageGeometry |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
30 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
31 private: |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
32 unsigned int width_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
33 unsigned int height_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
34 unsigned int depth_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
35 CoordinateSystem3D axialGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
36 CoordinateSystem3D coronalGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
37 CoordinateSystem3D sagittalGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
38 Vector voxelDimensions_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
39 Matrix transform_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
40 Matrix transformInverse_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
41 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
42 void Invalidate(); |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
43 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
44 public: |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
45 VolumeImageGeometry(); |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
46 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
47 unsigned int GetWidth() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
48 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
49 return width_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
50 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
51 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
52 unsigned int GetHeight() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
53 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
54 return height_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
55 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
56 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
57 unsigned int GetDepth() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
58 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
59 return depth_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
60 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
61 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
62 const CoordinateSystem3D& GetAxialGeometry() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
63 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
64 return axialGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
65 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
66 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
67 const CoordinateSystem3D& GetCoronalGeometry() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
68 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
69 return coronalGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
70 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
71 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
72 const CoordinateSystem3D& GetSagittalGeometry() const |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
73 { |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
74 return sagittalGeometry_; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
75 } |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
76 |
689
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
77 const CoordinateSystem3D& GetProjectionGeometry(VolumeProjection projection) const; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
78 |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
79 const Matrix& GetTransform() const |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
80 { |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
81 return transform_; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
82 } |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
83 |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
84 const Matrix& GetTransformInverse() const |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
85 { |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
86 return transformInverse_; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
87 } |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
88 |
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
89 void SetSize(unsigned int width, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
90 unsigned int height, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
91 unsigned int depth); |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
92 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
93 // Set the geometry of the first axial slice (i.e. the one whose |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
94 // depth == 0) |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
95 void SetAxialGeometry(const CoordinateSystem3D& geometry); |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
96 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
97 void SetVoxelDimensions(double x, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
98 double y, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
99 double z); |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
100 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
101 Vector GetVoxelDimensions(VolumeProjection projection) const; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
102 |
689
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
103 unsigned int GetProjectionWidth(VolumeProjection projection) const; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
104 |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
105 unsigned int GetProjectionHeight(VolumeProjection projection) const; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
106 |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
107 unsigned int GetProjectionDepth(VolumeProjection projection) const; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
108 |
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
109 // Get the 3D position of a point in the volume, where x, y and z |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
110 // lie in the [0;1] range |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
111 Vector GetCoordinates(float x, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
112 float y, |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
113 float z) const; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
114 |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
115 bool DetectProjection(VolumeProjection& projection, |
689
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
116 const Vector& planeNormal) const; |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
117 |
799 | 118 /** |
119 Being given a cutting plane, this method will determine if it is an | |
120 axial, sagittal or coronal cut and returns | |
121 the slice number corresponding to this cut. | |
122 | |
123 If the cutting plane is not parallel to the tree x = 0, y = 0 or z = 0 | |
124 planes, it is considered as arbitrary and the method returns false. | |
125 Otherwise, it returns true. | |
126 */ | |
689
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
127 bool DetectSlice(VolumeProjection& projection, |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
128 unsigned int& slice, |
93a8949a1ef7
VolumeImageGeometry::DetectSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
684
diff
changeset
|
129 const CoordinateSystem3D& plane) const; |
809
e8fdf29cd0ca
VolumeImageGeometry::GetProjectionSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
130 |
e8fdf29cd0ca
VolumeImageGeometry::GetProjectionSlice()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
131 CoordinateSystem3D GetProjectionSlice(VolumeProjection projection, |
811
ffec76a5f7eb
deprecating ParallelSlices
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
809
diff
changeset
|
132 unsigned int z) const; |
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
133 }; |
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
134 } |