Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 407:842a3c7cfdc0
renames
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 12 Nov 2018 11:44:20 +0100 |
parents | 5412adf19980 |
children | b70e9be013e4 |
rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
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24 #include "CoordinateSystem3D.h" |
131 | 25 #include "Extent2D.h" |
0 | 26 |
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27 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
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28 |
0 | 29 #include <list> |
30 | |
31 namespace OrthancStone | |
32 { | |
33 class DicomStructureSet : public boost::noncopyable | |
34 { | |
125 | 35 public: |
36 typedef std::pair<double, double> PolygonPoint; | |
37 | |
0 | 38 private: |
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39 struct ReferencedSlice |
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40 { |
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41 std::string seriesInstanceUid_; |
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42 CoordinateSystem3D geometry_; |
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43 double thickness_; |
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44 |
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45 ReferencedSlice() |
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46 { |
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47 } |
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48 |
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49 ReferencedSlice(const std::string& seriesInstanceUid, |
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50 const CoordinateSystem3D& geometry, |
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51 double thickness) : |
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52 seriesInstanceUid_(seriesInstanceUid), |
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53 geometry_(geometry), |
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54 thickness_(thickness) |
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55 { |
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56 } |
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57 }; |
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58 |
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59 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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60 |
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61 typedef std::vector<Vector> Points; |
0 | 62 |
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63 class Polygon |
0 | 64 { |
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65 private: |
131 | 66 std::string sopInstanceUid_; |
67 bool hasSlice_; | |
68 CoordinateSystem3D geometry_; | |
69 double projectionAlongNormal_; | |
70 double sliceThickness_; // In millimeters | |
71 Points points_; | |
72 Extent2D extent_; | |
0 | 73 |
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74 void CheckPoint(const Vector& v); |
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75 |
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76 public: |
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77 Polygon(const std::string& sopInstanceUid) : |
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78 sopInstanceUid_(sopInstanceUid), |
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79 hasSlice_(false) |
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80 { |
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81 } |
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82 |
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83 void Reserve(size_t n) |
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84 { |
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85 points_.reserve(n); |
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86 } |
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87 |
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88 void AddPoint(const Vector& v); |
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89 |
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90 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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91 |
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92 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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93 |
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94 const std::string& GetSopInstanceUid() const |
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95 { |
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96 return sopInstanceUid_; |
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97 } |
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98 |
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99 const Points& GetPoints() const |
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100 { |
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101 return points_; |
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102 } |
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103 |
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104 double GetSliceThickness() const |
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105 { |
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106 return sliceThickness_; |
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107 } |
131 | 108 |
109 bool Project(double& x1, | |
110 double& y1, | |
111 double& x2, | |
112 double& y2, | |
113 const CoordinateSystem3D& slice) const; | |
0 | 114 }; |
115 | |
116 typedef std::list<Polygon> Polygons; | |
117 | |
118 struct Structure | |
119 { | |
120 std::string name_; | |
121 std::string interpretation_; | |
122 Polygons polygons_; | |
123 uint8_t red_; | |
124 uint8_t green_; | |
125 uint8_t blue_; | |
126 }; | |
127 | |
128 typedef std::vector<Structure> Structures; | |
129 | |
122
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130 Structures structures_; |
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131 ReferencedSlices referencedSlices_; |
0 | 132 |
133 const Structure& GetStructure(size_t index) const; | |
134 | |
125 | 135 Structure& GetStructure(size_t index); |
136 | |
137 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
138 Structure& structure, | |
139 const CoordinateSystem3D& slice); | |
0 | 140 |
141 public: | |
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142 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); |
0 | 143 |
144 size_t GetStructureCount() const | |
145 { | |
146 return structures_.size(); | |
147 } | |
148 | |
149 Vector GetStructureCenter(size_t index) const; | |
150 | |
151 const std::string& GetStructureName(size_t index) const; | |
152 | |
153 const std::string& GetStructureInterpretation(size_t index) const; | |
154 | |
155 void GetStructureColor(uint8_t& red, | |
156 uint8_t& green, | |
157 uint8_t& blue, | |
158 size_t index) const; | |
159 | |
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160 void GetReferencedInstances(std::set<std::string>& instances); |
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161 |
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162 void AddReferencedSlice(const std::string& sopInstanceUid, |
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163 const std::string& seriesInstanceUid, |
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164 const CoordinateSystem3D& geometry, |
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165 double thickness); |
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166 |
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167 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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168 |
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169 void CheckReferencedSlices(); |
0 | 170 |
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171 Vector GetNormal() const; |
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172 |
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173 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc, |
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174 const std::string& instanceId); |
125 | 175 |
176 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
177 size_t index, | |
178 const CoordinateSystem3D& slice) | |
0 | 179 { |
125 | 180 return ProjectStructure(polygons, GetStructure(index), slice); |
0 | 181 } |
182 }; | |
183 } |