Mercurial > hg > orthanc-stone
annotate UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp @ 1804:5a872e69c74f
reorganization
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 20 May 2021 14:48:51 +0200 |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Affero General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Affero General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Affero General Public License |
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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19 **/ |
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20 |
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21 |
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22 /* |
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23 these tests are single-threaded... no worries for old buggy compilers |
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24 (I'm talking to YOU, cl.exe v100! And to your ancestors!) |
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25 */ |
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26 static std::string& GetTestJson() |
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27 { |
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28 static const char* resultRaw = NULL; |
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29 static std::string result; |
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30 if (resultRaw == NULL) |
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31 { |
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32 std::stringstream sst; |
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33 |
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34 sst << k_rtStruct_json00 |
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35 << k_rtStruct_json01 |
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36 << k_rtStruct_json02 |
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37 << k_rtStruct_json03 |
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38 << k_rtStruct_json04 |
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39 << k_rtStruct_json05 |
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40 << k_rtStruct_json06 |
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41 << k_rtStruct_json07 |
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42 << k_rtStruct_json08; |
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43 |
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44 std::string wholeBody = sst.str(); |
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45 result.swap(wholeBody); |
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46 resultRaw = result.c_str(); |
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47 } |
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48 return result; |
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49 } |
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50 |
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51 |
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52 namespace |
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53 { |
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54 void Initialize(const char* orthancApiUrl, OrthancStone::ILoadersContext& loadersContext) |
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55 { |
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56 Orthanc::WebServiceParameters p; |
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57 |
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58 OrthancStone::GenericLoadersContext& typedLoadersContext = |
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59 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext); |
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60 // Default is http://localhost:8042 |
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61 // Here's how you may change it |
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62 p.SetUrl(orthancApiUrl); |
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63 p.SetCredentials("orthanc", "orthanc"); |
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64 typedLoadersContext.SetOrthancParameters(p); |
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65 |
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66 typedLoadersContext.StartOracle(); |
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67 } |
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68 |
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69 void Exitialize(OrthancStone::ILoadersContext& loadersContext) |
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70 { |
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71 OrthancStone::GenericLoadersContext& typedLoadersContext = |
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72 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext); |
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73 |
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74 typedLoadersContext.StopOracle(); |
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75 } |
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76 |
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77 |
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78 #if 0 |
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79 class TestObserver : public ObserverBase<TestObserver> |
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80 { |
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81 public: |
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82 TestObserver() {}; |
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83 |
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84 virtual void Handle |
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85 |
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86 }; |
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87 #endif |
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88 |
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89 } |
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90 |
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91 TEST(StructureSet, DISABLED_StructureSetLoader_injection_feature_2020_05_10) |
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92 { |
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93 namespace pt = boost::posix_time; |
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94 |
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95 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1)); |
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96 Initialize("http://localhost:8042/", *loadersContext); |
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97 |
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98 boost::shared_ptr<DicomStructureSetLoader> loader = DicomStructureSetLoader::Create(*loadersContext); |
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99 |
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100 // replace with Orthanc ID of an uploaded RTSTRUCT instance! |
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101 loader->LoadInstanceFullVisibility("72c773ac-5059f2c4-2e6a9120-4fd4bca1-45701661"); |
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102 |
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103 bool bContinue(true); |
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104 |
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105 pt::ptime initialTime = pt::second_clock::local_time(); |
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106 |
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107 while (bContinue) |
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108 { |
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109 bContinue = !loader->AreStructuresReady(); |
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110 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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111 |
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112 { |
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113 pt::ptime nowTime = pt::second_clock::local_time(); |
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114 pt::time_duration diff = nowTime - initialTime; |
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115 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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116 std::cout << seconds << " seconds elapsed...\n"; |
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117 if (seconds > 30) |
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118 { |
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119 std::cout << "More than 30 seconds elapsed... Aborting test :(\n"; |
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120 //GTEST_FATAL_FAILURE_("More than 30 seconds elapsed... Aborting test :("); |
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121 //bContinue = false; |
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122 } |
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123 } |
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124 } |
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125 } |
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126 |
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127 class SliceProcessor : |
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128 public OrthancStone::OrthancSeriesVolumeProgressiveLoader::ISlicePostProcessor, |
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129 public OrthancStone::DicomStructureSetLoader::IInstanceLookupHandler |
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130 { |
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131 public: |
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132 SliceProcessor(OrthancStone::DicomStructureSetLoader& structLoader) : structLoader_(structLoader) |
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133 { |
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134 } |
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135 |
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136 virtual void ProcessCTDicomSlice(const Orthanc::DicomMap& instance) ORTHANC_OVERRIDE |
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137 { |
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138 std::string sopInstanceUid; |
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139 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false)) |
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140 { |
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141 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing SOPInstanceUID in a DICOM instance"); |
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142 } |
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143 slicesDicom_[sopInstanceUid] = boost::shared_ptr<DicomMap>(instance.Clone()); |
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144 } |
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145 |
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146 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE |
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147 { |
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148 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin(); |
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149 it != nonEmptyInstances.end(); |
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150 ++it) |
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151 { |
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152 const std::string nonEmptyInstance = *it; |
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153 if (slicesDicom_.find(nonEmptyInstance) == slicesDicom_.end()) |
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154 { |
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155 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Referenced SOPInstanceUID not found in CT"); |
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156 } |
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157 boost::shared_ptr<Orthanc::DicomMap> instance = slicesDicom_[nonEmptyInstance]; |
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158 structLoader_.AddReferencedSlice(*instance); |
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159 } |
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160 } |
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161 |
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162 OrthancStone::DicomStructureSetLoader& structLoader_; |
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163 std::map<std::string, boost::shared_ptr<Orthanc::DicomMap> > slicesDicom_; |
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164 }; |
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165 |
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166 void LoadCtSeriesBlocking(boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader, std::string seriesId) |
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167 { |
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168 namespace pt = boost::posix_time; |
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169 |
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170 // Load the CT |
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171 ctLoader->LoadSeries(seriesId); |
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172 |
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173 // Wait for CT to be loaded |
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174 pt::ptime initialTime = pt::second_clock::local_time(); |
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175 { |
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176 bool bContinue(true); |
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177 while (bContinue) |
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178 { |
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179 bContinue = !ctLoader->IsVolumeImageReadyInHighQuality(); |
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180 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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181 |
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182 { |
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183 pt::ptime nowTime = pt::second_clock::local_time(); |
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184 pt::time_duration diff = nowTime - initialTime; |
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185 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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186 std::cout << seconds << " seconds elapsed...\n"; |
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187 if (seconds > 30) |
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188 { |
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189 const char* msg = "More than 30 seconds elapsed when waiting for CT... Aborting test :(\n"; |
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190 GTEST_FATAL_FAILURE_(msg); |
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191 bContinue = false; |
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192 } |
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193 } |
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194 } |
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195 } |
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196 } |
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197 |
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198 |
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199 /** |
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200 Will fill planes |
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201 */ |
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202 void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes, |
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203 OrthancStone::VolumeProjection projection, |
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204 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader) |
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205 { |
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206 planes.clear(); // inefficient : we don't care |
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207 |
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208 const VolumeImageGeometry& geometry = ctLoader->GetImageGeometry(); |
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209 const unsigned int depth = geometry.GetProjectionDepth(projection); |
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210 |
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211 planes.resize(depth); |
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212 |
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213 for (unsigned int z = 0; z < depth; z++) |
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214 { |
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215 planes[z] = geometry.GetProjectionSlice(projection, z); |
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216 } |
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217 } |
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218 |
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219 void LoadRtStructBlocking(boost::shared_ptr<OrthancStone::DicomStructureSetLoader> structLoader, std::string instanceId) |
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220 { |
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221 namespace pt = boost::posix_time; |
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222 |
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223 // Load RTSTRUCT |
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224 structLoader->LoadInstanceFullVisibility(instanceId); |
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225 |
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226 pt::ptime initialTime = pt::second_clock::local_time(); |
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227 |
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228 // Wait for the loading process to complete |
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229 { |
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230 bool bContinue(true); |
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231 while (bContinue) |
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232 { |
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233 bContinue = !structLoader->AreStructuresReady(); |
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234 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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235 |
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236 { |
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237 pt::ptime nowTime = pt::second_clock::local_time(); |
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238 pt::time_duration diff = nowTime - initialTime; |
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239 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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240 std::cout << seconds << " seconds elapsed...\n"; |
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241 if (seconds > 30) |
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242 { |
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243 const char* msg = "More than 30 seconds elapsed when waiting for RTSTRUCT... Aborting test :(\n"; |
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244 GTEST_FATAL_FAILURE_(msg); |
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245 bContinue = false; |
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246 } |
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247 } |
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248 } |
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249 } |
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250 } |
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251 |
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252 TEST(StructureSet, DISABLED_Integration_Compound_CT_Struct_Loading) |
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253 { |
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254 const double TOLERANCE = 0.0000001; |
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255 |
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256 // create loaders context |
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257 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1)); |
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258 Initialize("http://localhost:8042/", *loadersContext); |
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259 |
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260 const char* ctSeriesId = "a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"; |
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261 const char* rtStructInstanceId = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9"; |
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262 |
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263 // we'll compare normal loading and optimized loading with SliceProcessor to store the dicom |
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264 |
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265 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> normalStructLoader; |
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266 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> optimizedStructLoader; |
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267 |
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268 { |
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269 // Create the CT volume |
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270 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>(); |
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271 |
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272 // Create CT loader |
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273 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader = |
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274 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume); |
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275 |
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276 // Create struct loader |
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277 normalStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext); |
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278 |
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279 // Load the CT |
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280 LoadCtSeriesBlocking(ctLoader, ctSeriesId); |
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281 |
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282 const OrthancStone::VolumeImageGeometry& imageGeometry = ctLoader->GetImageGeometry(); |
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283 unsigned int width = imageGeometry.GetWidth(); |
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284 EXPECT_EQ(512u, width); |
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285 unsigned int height = imageGeometry.GetHeight(); |
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286 EXPECT_EQ(512u, height); |
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287 unsigned int depth = imageGeometry.GetDepth(); |
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288 EXPECT_EQ(109u, depth); |
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289 |
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290 // Load the RTStruct |
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291 LoadRtStructBlocking(normalStructLoader, rtStructInstanceId); |
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292 } |
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293 |
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294 std::vector<OrthancStone::CoordinateSystem3D> axialPlanes; |
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295 std::vector<OrthancStone::CoordinateSystem3D> coronalPlanes; |
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296 std::vector<OrthancStone::CoordinateSystem3D> sagittalPlanes; |
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297 |
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298 { |
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299 // Create the CT volume |
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300 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>(); |
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301 |
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302 // Create CT loader |
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303 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader = |
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304 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume); |
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305 |
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306 // Create struct loader |
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307 optimizedStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext); |
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308 |
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309 // create the slice processor / instance lookup |
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310 boost::shared_ptr<SliceProcessor> sliceProcessor(new SliceProcessor(*optimizedStructLoader)); |
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311 |
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312 // Inject it into CT loader |
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313 ctLoader->SetDicomSlicePostProcessor(sliceProcessor); |
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314 |
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315 // Inject it into RTSTRUCT loader |
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316 optimizedStructLoader->SetInstanceLookupHandler(sliceProcessor); |
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317 |
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318 // Load the CT |
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319 LoadCtSeriesBlocking(ctLoader, ctSeriesId); |
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320 |
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321 // now, the slices are collected. let's do some checks |
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322 EXPECT_EQ(109u, sliceProcessor->slicesDicom_.size()); |
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323 |
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324 // Load the RTStruct |
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325 LoadRtStructBlocking(optimizedStructLoader, rtStructInstanceId); |
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326 |
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327 GetCTPlanes(axialPlanes, VolumeProjection_Axial, ctLoader); |
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328 GetCTPlanes(coronalPlanes, VolumeProjection_Coronal, ctLoader); |
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329 GetCTPlanes(sagittalPlanes, VolumeProjection_Sagittal, ctLoader); |
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330 } |
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331 |
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332 // DO NOT DELETE THOSE! |
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333 OrthancStone::DicomStructureSet* normalContent = normalStructLoader->GetContent(); |
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334 OrthancStone::DicomStructureSet* optimizedContent = optimizedStructLoader->GetContent(); |
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335 |
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336 EXPECT_EQ(normalContent->GetStructuresCount(), optimizedContent->GetStructuresCount()); |
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337 |
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338 /*void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes, |
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339 OrthancStone::VolumeProjection projection, |
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340 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)*/ |
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341 |
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342 |
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343 std::vector<OrthancStone::CoordinateSystem3D> allPlanes; |
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344 |
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345 // let's gather all the possible cutting planes in a single struct |
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346 for (size_t i = 0; i < axialPlanes.size(); ++i) |
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347 allPlanes.push_back(axialPlanes[i]); |
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348 |
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349 for (size_t i = 0; i < coronalPlanes.size(); ++i) |
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350 allPlanes.push_back(coronalPlanes[i]); |
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351 |
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352 for (size_t i = 0; i < sagittalPlanes.size(); ++i) |
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353 allPlanes.push_back(sagittalPlanes[i]); |
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354 |
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355 for (size_t i = 0; i < normalContent->GetStructuresCount(); ++i) |
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356 { |
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357 std::cout << "Testing structure (" << i << "/" << normalContent->GetStructuresCount() << ")\n"; |
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358 Vector structureCenter1 = normalContent->GetStructureCenter(i); |
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359 const std::string& structureName1 = normalContent->GetStructureName(i); |
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360 const std::string& structureInterpretation1 = normalContent->GetStructureInterpretation(i); |
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361 Color structureColor1 = normalContent->GetStructureColor(i); |
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362 |
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363 Vector structureCenter2 = optimizedContent->GetStructureCenter(i); |
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364 const std::string& structureName2 = optimizedContent->GetStructureName(i); |
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365 const std::string& structureInterpretation2 = optimizedContent->GetStructureInterpretation(i); |
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366 Color structureColor2 = optimizedContent->GetStructureColor(i); |
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367 |
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368 EXPECT_NEAR(structureCenter1[0], structureCenter2[0], TOLERANCE); |
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369 EXPECT_NEAR(structureCenter1[1], structureCenter2[1], TOLERANCE); |
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370 EXPECT_NEAR(structureCenter1[2], structureCenter2[2], TOLERANCE); |
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371 |
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372 EXPECT_EQ(structureName1, structureName2); |
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373 EXPECT_EQ(structureInterpretation1, structureInterpretation2); |
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374 EXPECT_EQ(structureColor1.GetRed(), structureColor2.GetRed()); |
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375 EXPECT_EQ(structureColor1.GetGreen(), structureColor2.GetGreen()); |
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376 EXPECT_EQ(structureColor1.GetBlue(), structureColor2.GetBlue()); |
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377 |
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378 // "random" walk through the planes. Processing them all takes too long (~ 1 min) |
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379 for (size_t j = 0; j < allPlanes.size(); j += 37) |
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380 { |
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381 const OrthancStone::CoordinateSystem3D& plane = allPlanes[j]; |
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382 |
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383 std::vector< std::pair<Point2D, Point2D> > segments1; |
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384 std::vector< std::pair<Point2D, Point2D> > segments2; |
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385 |
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386 bool ok1 = normalContent->ProjectStructure(segments1, i, plane); |
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387 bool ok2 = optimizedContent->ProjectStructure(segments2, i, plane); |
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388 |
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389 // checks here |
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390 EXPECT_EQ(ok1, ok2); |
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391 EXPECT_EQ(segments1.size(), segments2.size()); |
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392 |
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393 for (size_t k = 0; k < segments1.size(); ++k) |
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394 { |
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395 EXPECT_NEAR(segments1[k].first.x, segments2[k].first.x, TOLERANCE); |
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396 EXPECT_NEAR(segments1[k].first.y, segments2[k].first.y, TOLERANCE); |
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397 EXPECT_NEAR(segments1[k].second.x, segments2[k].second.x, TOLERANCE); |
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398 EXPECT_NEAR(segments1[k].second.y, segments2[k].second.y, TOLERANCE); |
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399 } |
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400 } |
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401 } |
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402 |
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403 Exitialize(*loadersContext); |
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404 } |