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annotate OrthancStone/Sources/Toolbox/DicomStructuredReport.h @ 2098:4288d635d77e dicom-sr

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first rendering of dicom-sr
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 08 Nov 2023 17:23:31 +0100
parents a9e23ef9ee09
children 129cb165ea8d
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #pragma once
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25
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26 #if !defined(ORTHANC_ENABLE_DCMTK)
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27 # error The macro ORTHANC_ENABLE_DCMTK must be defined
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28 #endif
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29
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30 #if ORTHANC_ENABLE_DCMTK != 1
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31 # error Support for DCMTK must be enabled
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32 #endif
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33
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34 #include "../Scene2D/ScenePoint2D.h"
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35
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36 #include <DicomParsing/ParsedDicomFile.h>
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37
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38 #include <dcmtk/dcmdata/dcitem.h>
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39 #include <deque>
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40 #include <list>
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41 #include <set>
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42
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43 namespace OrthancStone
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44 {
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45 class DicomStructuredReport : public boost::noncopyable
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46 {
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47 public:
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48 enum StructureType
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49 {
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50 StructureType_Point,
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51 StructureType_Polyline
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52 };
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53
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54 class Structure : public boost::noncopyable
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55 {
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56 private:
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57 std::string sopInstanceUid_;
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58 bool hasFrameNumber_;
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59 unsigned int frameNumber_;
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60 bool hasProbabilityOfCancer_;
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61 float probabilityOfCancer_;
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62
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63 protected:
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64 void Copy(const Structure& other);
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65
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66 public:
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67 Structure(const std::string& sopInstanceUid);
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68
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69 virtual ~Structure()
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70 {
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71 }
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72
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73 virtual Structure* Clone() const = 0;
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74
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75 virtual StructureType GetType() const = 0;
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76
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77 const std::string& GetSopInstanceUid() const
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78 {
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79 return sopInstanceUid_;
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80 }
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81
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82 void SetFrameNumber(unsigned int frame);
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83
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84 void SetProbabilityOfCancer(float probability);
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85
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86 bool HasFrameNumber() const
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87 {
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88 return hasFrameNumber_;
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89 }
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90
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91 bool HasProbabilityOfCancer() const
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92 {
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93 return hasProbabilityOfCancer_;
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94 }
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95
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96 unsigned int GetFrameNumber() const;
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97
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98 float GetProbabilityOfCancer() const;
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99 };
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100
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101
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102 class Point : public Structure
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103 {
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104 private:
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105 ScenePoint2D point_;
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106
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107 public:
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108 Point(const std::string& sopInstanceUid,
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109 double x,
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110 double y);
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111
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112 virtual Structure* Clone() const ORTHANC_OVERRIDE;
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113
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114 virtual StructureType GetType() const ORTHANC_OVERRIDE
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115 {
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116 return StructureType_Point;
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117 }
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118
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119 const ScenePoint2D& GetPoint() const
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120 {
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121 return point_;
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122 }
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123 };
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124
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125
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126 class Polyline : public Structure
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127 {
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128 private:
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129 std::vector<ScenePoint2D> points_;
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130
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131 public:
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132 Polyline(const std::string& sopInstanceUid,
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133 const float* points,
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134 unsigned long pointsCount);
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135
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136 Polyline(const std::string& sopInstanceUid,
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137 const std::vector<ScenePoint2D>& points);
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138
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139 virtual Structure* Clone() const ORTHANC_OVERRIDE;
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140
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141 virtual StructureType GetType() const ORTHANC_OVERRIDE
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142 {
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143 return StructureType_Polyline;
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144 }
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145
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146 size_t GetSize() const
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147 {
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148 return points_.size();
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149 }
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150
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151 const ScenePoint2D& GetPoint(size_t i) const;
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152 };
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153
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154
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155 private:
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156 class ReferencedInstance
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157 {
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158 private:
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159 std::string studyInstanceUid_;
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160 std::string seriesInstanceUid_;
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161 std::string sopClassUid_;
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162 std::set<unsigned int> frames_;
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163
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164 public:
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165 ReferencedInstance(const std::string& studyInstanceUid,
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166 const std::string& seriesInstanceUid,
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167 const std::string& sopClassUid) :
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168 studyInstanceUid_(studyInstanceUid),
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169 seriesInstanceUid_(seriesInstanceUid),
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170 sopClassUid_(sopClassUid)
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171 {
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172 }
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173
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174 const std::string& GetStudyInstanceUid() const
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175 {
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176 return studyInstanceUid_;
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177 }
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178
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179 const std::string& GetSeriesInstanceUid() const
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180 {
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181 return seriesInstanceUid_;
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182 }
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183
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184 const std::string& GetSopClassUid() const
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185 {
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186 return sopClassUid_;
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187 }
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188
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189 void AddFrame(unsigned int frame)
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190 {
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191 frames_.insert(frame);
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192 }
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193
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194 const std::set<unsigned int>& GetFrames() const
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195 {
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196 return frames_;
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197 }
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198 };
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199
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200
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201 void AddStructure(const std::string& sopInstanceUid,
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202 DcmItem& group,
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203 bool hasFrameNumber,
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204 unsigned int frameNumber,
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205 bool hasProbabilityOfCancer,
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206 float probabilityOfCancer);
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207
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208 std::string studyInstanceUid_;
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209 std::string seriesInstanceUid_;
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210 std::string sopInstanceUid_;
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211 std::map<std::string, ReferencedInstance*> instancesInformation_;
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212 std::vector<std::string> orderedInstances_;
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213 std::deque<Structure*> structures_;
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214
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215 public:
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216 class ReferencedFrame
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217 {
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218 private:
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219 std::string studyInstanceUid_;
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220 std::string seriesInstanceUid_;
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221 std::string sopInstanceUid_;
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222 std::string sopClassUid_;
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223 unsigned int frameNumber_;
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224
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225 public:
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226 ReferencedFrame(const std::string& studyInstanceUid,
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227 const std::string& seriesInstanceUid,
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228 const std::string& sopInstanceUid,
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229 const std::string& sopClassUid,
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230 unsigned int frameNumber) :
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231 studyInstanceUid_(studyInstanceUid),
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232 seriesInstanceUid_(seriesInstanceUid),
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233 sopInstanceUid_(sopInstanceUid),
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234 sopClassUid_(sopClassUid),
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235 frameNumber_(frameNumber)
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236 {
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237 }
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238
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239 const std::string& GetStudyInstanceUid() const
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240 {
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241 return studyInstanceUid_;
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242 }
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243
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244 const std::string& GetSeriesInstanceUid() const
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245 {
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246 return seriesInstanceUid_;
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247 }
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248
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249 const std::string& GetSopInstanceUid() const
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250 {
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251 return sopInstanceUid_;
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252 }
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253
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254 const std::string& GetSopClassUid() const
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255 {
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256 return sopClassUid_;
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257 }
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258
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259 unsigned int GetFrameNumber() const
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260 {
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261 return frameNumber_;
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262 }
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263 };
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264
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265 DicomStructuredReport(Orthanc::ParsedDicomFile& dicom);
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266
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267 DicomStructuredReport(const DicomStructuredReport& other); // Copy constructor
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268
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269 ~DicomStructuredReport();
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270
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271 const std::string& GetStudyInstanceUid() const
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272 {
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273 return studyInstanceUid_;
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274 }
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275
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276 const std::string& GetSeriesInstanceUid() const
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277 {
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278 return seriesInstanceUid_;
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279 }
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280
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281 const std::string& GetSopInstanceUid() const
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282 {
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283 return sopInstanceUid_;
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284 }
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285
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286 size_t GetReferencedInstancesCount() const
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287 {
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288 return orderedInstances_.size();
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289 }
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290
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291 void GetReferencedInstance(std::string& studyInstanceUid,
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292 std::string& seriesInstanceUid,
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293 std::string& sopInstanceUid,
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294 std::string& sopClassUid,
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295 size_t i) const;
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296
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297 void ExportReferencedFrames(std::list<ReferencedFrame>& frames) const;
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298
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299 size_t GetStructuresCount() const
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300 {
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301 return structures_.size();
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302 }
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303
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304 const Structure& GetStructure(size_t index) const;
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305 };
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306 }