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annotate OrthancStone/Sources/Toolbox/SortedFrames.cpp @ 1616:32090b775777

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 30 Oct 2020 17:40:08 +0100
parents b3c439d96d3e
children 78509230f0d7
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fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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1 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "SortedFrames.h"
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24
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25 #include "GeometryToolbox.h"
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27 #include <OrthancException.h>
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28 #include <Toolbox.h>
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29
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30 namespace OrthancStone
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31 {
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32 SortedFrames::Instance::Instance(const Orthanc::DicomMap& tags)
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33 {
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34 tags_.Assign(tags);
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35
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36 if (!tags.LookupStringValue(sopInstanceUid_, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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37 {
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38 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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39 }
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40
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41 uint32_t tmp;
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42 if (tags.ParseUnsignedInteger32(tmp, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES))
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43 {
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44 numberOfFrames_ = tmp;
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45 }
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46 else
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47 {
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48 numberOfFrames_ = 1;
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49 }
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50
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51 std::string photometric;
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52 if (tags.LookupStringValue(photometric, Orthanc::DICOM_TAG_PHOTOMETRIC_INTERPRETATION, false))
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53 {
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54 Orthanc::Toolbox::StripSpaces(photometric);
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55 monochrome1_ = (photometric == "MONOCHROME1");
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56 }
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57 else
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58 {
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59 monochrome1_ = false;
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60 }
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61
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62 hasPosition_ = (
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63 LinearAlgebra::ParseVector(position_, tags, Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT) &&
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64 position_.size() == 3 &&
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65 GeometryToolbox::ComputeNormal(normal_, tags));
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66 }
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67
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68
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69 const Vector& SortedFrames::Instance::GetNormal() const
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70 {
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71 if (hasPosition_)
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72 {
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73 return normal_;
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74 }
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75 else
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76 {
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77 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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78 }
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79 }
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80
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81
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82 const Vector& SortedFrames::Instance::GetPosition() const
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83 {
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84 if (hasPosition_)
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85 {
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86 return position_;
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87 }
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88 else
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89 {
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90 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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91 }
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92 }
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93
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94
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95 SortedFrames::Frame::Frame(const Instance& instance,
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96 unsigned int frameNumber) :
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97 instance_(&instance),
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98 frameNumber_(frameNumber)
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99 {
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100 if (frameNumber >= instance.GetNumberOfFrames())
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101 {
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102 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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103 }
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104 }
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105
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106
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107 const SortedFrames::Instance& SortedFrames::GetInstance(size_t instanceIndex) const
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108 {
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109 if (instanceIndex >= instances_.size())
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110 {
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111 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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112 }
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113 else
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114 {
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115 assert(instances_[instanceIndex] != NULL);
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116 return *instances_[instanceIndex];
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117 }
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118 }
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119
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120
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121 const SortedFrames::Frame& SortedFrames::GetFrame(size_t frameIndex) const
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122 {
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123 if (!sorted_)
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124 {
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125 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
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126 "Sort() has not been called");
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127 }
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128 if (frameIndex >= frames_.size())
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diff changeset
129 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
130 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
132 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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133 {
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
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diff changeset
134 return frames_[frameIndex];
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Sebastien Jodogne <s.jodogne@gmail.com>
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135 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
138
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5e3cfe87a873 SortedFrames::Clear()
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diff changeset
139 void SortedFrames::Clear()
1478
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diff changeset
140 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
142 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
143 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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144 delete instances_[i];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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145 }
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5e3cfe87a873 SortedFrames::Clear()
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146
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
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147 studyInstanceUid_.clear();
5e3cfe87a873 SortedFrames::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
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148 seriesInstanceUid_.clear();
5e3cfe87a873 SortedFrames::Clear()
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149 frames_.clear();
1602
b2941196cabf SortedFrames::LookupFrame()
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150
b2941196cabf SortedFrames::LookupFrame()
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151 instancesIndex_.clear();
b2941196cabf SortedFrames::LookupFrame()
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152 framesIndex_.clear();
b2941196cabf SortedFrames::LookupFrame()
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153
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5e3cfe87a873 SortedFrames::Clear()
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154 sorted_ = true;
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155 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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156
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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157
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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158 void SortedFrames::AddInstance(const Orthanc::DicomMap& tags)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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159 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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160 std::unique_ptr<Instance> instance(new Instance(tags));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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161
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73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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162 std::string studyInstanceUid, seriesInstanceUid, sopInstanceUid;
1478
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163 if (!tags.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) ||
1599
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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164 !tags.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false) ||
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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165 !tags.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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166 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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167 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
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168 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
diff changeset
169
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
170 if (instances_.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
172 studyInstanceUid_ = studyInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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173 seriesInstanceUid_ = seriesInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
diff changeset
177 if (studyInstanceUid_ != studyInstanceUid ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
178 seriesInstanceUid_ != seriesInstanceUid)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
179 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
180 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
181 "Mixing instances from different series");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184
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73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
185 if (instancesIndex_.find(sopInstanceUid) != instancesIndex_.end())
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
186 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
187 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
188 "Cannot register twice the same SOP Instance UID");
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
189 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
190
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
191 instancesIndex_[sopInstanceUid] = instances_.size();
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
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192
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diff changeset
193 instances_.push_back(instance.release());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
194 sorted_ = false;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
195 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
197
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
198
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73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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diff changeset
199 bool SortedFrames::LookupSopInstanceUid(size_t& instanceIndex,
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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parents: 1598
diff changeset
200 const std::string& sopInstanceUid) const
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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diff changeset
201 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
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diff changeset
202 InstancesIndex::const_iterator found = instancesIndex_.find(sopInstanceUid);
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
203
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
204 if (found == instancesIndex_.end())
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
205 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
206 return false;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
207 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
208 else
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
209 {
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
210 instanceIndex = found->second;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
211 return true;
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
212 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
213 }
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
214
73cd85d7da6a SortedFrames::LookupSopInstanceUid()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
215
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 void SortedFrames::AddFramesOfInstance(std::set<size_t>& remainingInstances,
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
217 size_t instanceIndex)
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 {
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
219 assert(instances_[instanceIndex] != NULL);
b253b79906fa clarifying variable names: frameIndex vs numberIndex
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parents: 1599
diff changeset
220 const Instance& instance = *instances_[instanceIndex];
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 for (unsigned int i = 0; i < instance.GetNumberOfFrames(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223 {
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
224 framesIndex_[std::make_pair(instance.GetSopInstanceUid(), i)] = frames_.size();
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
diff changeset
225 frames_.push_back(Frame(instance, i));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
228 assert(remainingInstances.find(instanceIndex) != remainingInstances.end());
b253b79906fa clarifying variable names: frameIndex vs numberIndex
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parents: 1599
diff changeset
229 remainingInstances.erase(instanceIndex);
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
diff changeset
230 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 namespace
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 template<typename T>
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 class SortableItem
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238 private:
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 T value_;
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
240 size_t instanceIndex_;
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
241 std::string sopInstanceUid_;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 public:
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 SortableItem(const T& value,
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
245 size_t instanceIndex,
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
246 const std::string& sopInstanceUid) :
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 value_(value),
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
248 instanceIndex_(instanceIndex),
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 sopInstanceUid_(sopInstanceUid)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 size_t GetInstanceIndex() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 {
1600
b253b79906fa clarifying variable names: frameIndex vs numberIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1599
diff changeset
255 return instanceIndex_;
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 bool operator< (const SortableItem& other) const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
260 return (value_ < other.value_ ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 (value_ == other.value_ &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 sopInstanceUid_ < other.sopInstanceUid_));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 };
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
267
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
268 void SortedFrames::SortUsingIntegerTag(std::set<size_t>& remainingInstances,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
269 const Orthanc::DicomTag& tag)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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270 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
271 std::vector< SortableItem<int32_t> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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272 items.reserve(remainingInstances.size());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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273
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
274 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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275 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
276 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
277 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
278 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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diff changeset
279
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
280 int32_t value;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
281 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 if (instance.GetTags().ParseInteger32(value, tag) &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
284 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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285 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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286 items.push_back(SortableItem<int32_t>(value, *it, sopInstanceUid));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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287 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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288 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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289
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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290 std::sort(items.begin(), items.end());
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291
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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292 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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293 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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294 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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295 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
296 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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297
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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298
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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299 void SortedFrames::SortUsingSopInstanceUid(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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300 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
301 std::vector<SortableItem<int32_t> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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302 items.reserve(remainingInstances.size());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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303
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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304 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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parents:
diff changeset
305 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
307 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
309
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
310 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 if (instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 items.push_back(SortableItem<int32_t>(0 /* arbitrary value */, *it, sopInstanceUid));
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 void SortedFrames::SortUsing3DLocation(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 * Compute the mean of the normal vectors, using the recursive
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 * formula for arithmetic means for numerical stability.
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 * https://diego.assencio.com/?index=c34d06f4f4de2375658ed41f70177d59
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 **/
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 Vector meanNormal;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 LinearAlgebra::AssignVector(meanNormal, 0, 0, 0);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 unsigned int n = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 if (instance.HasPosition())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 n += 1;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 meanNormal += (instance.GetNormal() - meanNormal) / static_cast<float>(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 std::vector<SortableItem<float> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 items.reserve(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 assert(instances_[*it] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 const Instance& instance = *instances_[*it];
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 if (instance.HasPosition() &&
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 double p = LinearAlgebra::DotProduct(meanNormal, instance.GetPosition());
1605
b3c439d96d3e warning fix
Benjamin Golinvaux <bgo@osimis.io>
parents: 1602
diff changeset
368 items.push_back(SortableItem<float>(static_cast<float>(p), *it, sopInstanceUid));
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 assert(items.size() <= n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 size_t SortedFrames::GetFramesCount() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 if (sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 return frames_.size();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 "Sort() has not been called");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
397 bool SortedFrames::LookupFrame(size_t& frameIndex,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
398 const std::string& sopInstanceUid,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
399 unsigned int frameNumber) const
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
400 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
401 if (sorted_)
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
402 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
403 FramesIndex::const_iterator found = framesIndex_.find(
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
404 std::make_pair(sopInstanceUid, frameNumber));
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
405
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
406 if (found == framesIndex_.end())
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
407 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
408 return false;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
409 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
410 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
411 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
412 frameIndex = found->second;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
413 return true;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
414 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
415 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
416 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
417 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
418 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
419 "Sort() has not been called");
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
420 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
421 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
422
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
423
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 void SortedFrames::Sort()
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 if (!sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 size_t totalFrames = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 std::set<size_t> remainingInstances;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 totalFrames += instances_[i]->GetNumberOfFrames();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 remainingInstances.insert(i);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 frames_.reserve(totalFrames);
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
441 framesIndex_.clear();
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_INSTANCE_NUMBER); // VR is "IS"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_IMAGE_INDEX); // VR is "US"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 SortUsing3DLocation(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 SortUsingSopInstanceUid(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 // The following could in theory happen if several instances
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 // have the same SOPInstanceUID, no ordering is available
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
451 it != remainingInstances.end(); ++it)
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 AddFramesOfInstance(remainingInstances, *it);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 if (frames_.size() != totalFrames ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 !remainingInstances.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 sorted_ = true;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 }