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annotate OrthancStone/Sources/Toolbox/SortedFrames.cpp @ 1964:2034ae383cfd deep-learning

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integration default->deep-learning
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 28 Oct 2022 07:47:55 +0200
parents 7053b8a0aaec
children 07964689cb0b
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fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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1 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
1871
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "SortedFrames.h"
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25
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26 #include "GeometryToolbox.h"
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27
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28 #include <Logging.h>
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29 #include <OrthancException.h>
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30 #include <Toolbox.h>
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31
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32 namespace OrthancStone
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33 {
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34 SortedFrames::Frame::Frame(const DicomInstanceParameters& instance,
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35 unsigned int frameNumber) :
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36 instance_(&instance),
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37 frameNumber_(frameNumber)
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38 {
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39 if (frameNumber >= instance.GetNumberOfFrames())
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40 {
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41 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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42 }
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43 }
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44
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45
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46 double SortedFrames::Frame::ComputeDistance(const Vector& p) const
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47 {
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48 const CoordinateSystem3D& plane = instance_->GetFrameGeometry(frameNumber_);
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49 return plane.ComputeDistance(p);
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50 }
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51
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52
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53 const DicomInstanceParameters& SortedFrames::GetInstance(size_t instanceIndex) const
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54 {
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55 if (instanceIndex >= instances_.size())
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56 {
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57 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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58 }
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59 else
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60 {
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61 assert(instances_[instanceIndex] != NULL);
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62 return *instances_[instanceIndex];
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63 }
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64 }
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65
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66
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67 const SortedFrames::Frame& SortedFrames::GetFrame(size_t frameIndex) const
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68 {
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69 if (!sorted_)
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70 {
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71 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
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72 "Sort() has not been called");
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73 }
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74 if (frameIndex >= frames_.size())
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75 {
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76 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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77 }
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78 else
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79 {
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80 return frames_[frameIndex];
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81 }
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82 }
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83
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84
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85 void SortedFrames::Clear()
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86 {
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87 for (size_t i = 0; i < instances_.size(); i++)
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88 {
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89 assert(instances_[i] != NULL);
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90 delete instances_[i];
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91 }
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92
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93 studyInstanceUid_.clear();
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94 seriesInstanceUid_.clear();
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95 frames_.clear();
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96
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97 instancesIndex_.clear();
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98 framesIndex_.clear();
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99
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100 sorted_ = true;
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101 }
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102
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103
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104 void SortedFrames::AddInstance(const Orthanc::DicomMap& tags)
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105 {
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106 std::unique_ptr<DicomInstanceParameters> instance(new DicomInstanceParameters(tags));
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107
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108 if (instances_.empty())
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109 {
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110 studyInstanceUid_ = instance->GetStudyInstanceUid();
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111 seriesInstanceUid_ = instance->GetSeriesInstanceUid();
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112 }
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113 else
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114 {
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115 if (studyInstanceUid_ != instance->GetStudyInstanceUid() ||
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116 seriesInstanceUid_ != instance->GetSeriesInstanceUid())
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117 {
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118 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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119 "Mixing instances from different series");
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120 }
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121 }
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122
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123 if (instancesIndex_.find(instance->GetSopInstanceUid()) != instancesIndex_.end())
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124 {
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125 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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126 "Cannot register twice the same SOP Instance UID");
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127 }
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128
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129 instancesIndex_[instance->GetSopInstanceUid()] = instances_.size();
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130
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131 instances_.push_back(instance.release());
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132 sorted_ = false;
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133 frames_.clear();
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134 }
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135
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136
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137 bool SortedFrames::LookupSopInstanceUid(size_t& instanceIndex,
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138 const std::string& sopInstanceUid) const
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139 {
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140 InstancesIndex::const_iterator found = instancesIndex_.find(sopInstanceUid);
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141
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142 if (found == instancesIndex_.end())
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143 {
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144 return false;
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145 }
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146 else
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147 {
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148 instanceIndex = found->second;
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149 return true;
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150 }
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151 }
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152
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153
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154 void SortedFrames::AddFramesOfInstance(std::set<size_t>& remainingInstances,
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155 size_t instanceIndex)
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156 {
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157 assert(instances_[instanceIndex] != NULL);
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158 const DicomInstanceParameters& instance = *instances_[instanceIndex];
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159
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160 for (unsigned int i = 0; i < instance.GetNumberOfFrames(); i++)
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161 {
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162 framesIndex_[std::make_pair(instance.GetSopInstanceUid(), i)] = frames_.size();
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163 frames_.push_back(Frame(instance, i));
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164 }
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165
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166 assert(remainingInstances.find(instanceIndex) != remainingInstances.end());
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167 remainingInstances.erase(instanceIndex);
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168 }
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169
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170
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171 namespace
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172 {
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173 template<typename T>
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174 class SortableItem
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175 {
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176 private:
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177 T value_;
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178 size_t instanceIndex_;
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179 std::string sopInstanceUid_;
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180
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181 public:
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182 SortableItem(const T& value,
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183 size_t instanceIndex,
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184 const std::string& sopInstanceUid) :
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185 value_(value),
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186 instanceIndex_(instanceIndex),
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187 sopInstanceUid_(sopInstanceUid)
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188 {
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189 }
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190
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191 size_t GetInstanceIndex() const
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192 {
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193 return instanceIndex_;
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194 }
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195
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196 bool operator< (const SortableItem& other) const
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197 {
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198 return (value_ < other.value_ ||
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199 (value_ == other.value_ &&
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200 sopInstanceUid_ < other.sopInstanceUid_));
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201 }
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202 };
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203 }
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204
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205
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206 void SortedFrames::SortUsingIntegerTag(std::set<size_t>& remainingInstances,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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207 const Orthanc::DicomTag& tag)
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208 {
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209 std::vector< SortableItem<int32_t> > items;
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210 items.reserve(remainingInstances.size());
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211
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212 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
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213 it != remainingInstances.end(); ++it)
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214 {
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215 assert(instances_[*it] != NULL);
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216 const DicomInstanceParameters& instance = *instances_[*it];
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217
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218 int32_t value;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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219 std::string sopInstanceUid;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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220 if (instance.GetTags().ParseInteger32(value, tag) &&
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221 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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222 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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223 {
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224 items.push_back(SortableItem<int32_t>(value, *it, sopInstanceUid));
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225 }
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226 }
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227
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228 std::sort(items.begin(), items.end());
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229
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230 for (size_t i = 0; i < items.size(); i++)
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231 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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232 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
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233 }
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234 }
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235
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236
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237 void SortedFrames::SortUsingSopInstanceUid(std::set<size_t>& remainingInstances)
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238 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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239 std::vector<SortableItem<int32_t> > items;
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240 items.reserve(remainingInstances.size());
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241
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242 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
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243 it != remainingInstances.end(); ++it)
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244 {
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245 assert(instances_[*it] != NULL);
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246 const DicomInstanceParameters& instance = *instances_[*it];
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247
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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248 std::string sopInstanceUid;
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249 if (instance.GetTags().LookupStringValue(
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250 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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251 {
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252 items.push_back(SortableItem<int32_t>(0 /* arbitrary value */, *it, sopInstanceUid));
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253 }
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254 }
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255
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256 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 void SortedFrames::SortUsing3DLocation(std::set<size_t>& remainingInstances)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 /**
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 * Compute the mean of the normal vectors, using the recursive
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 * formula for arithmetic means for numerical stability.
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 * https://diego.assencio.com/?index=c34d06f4f4de2375658ed41f70177d59
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 **/
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 Vector meanNormal;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 LinearAlgebra::AssignVector(meanNormal, 0, 0, 0);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 unsigned int n = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 assert(instances_[*it] != NULL);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
282 const DicomInstanceParameters& instance = *instances_[*it];
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
284 if (instance.GetGeometry().IsValid())
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 n += 1;
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
287 meanNormal += (instance.GetGeometry().GetNormal() - meanNormal) / static_cast<float>(n);
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 std::vector<SortableItem<float> > items;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 items.reserve(n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 it != remainingInstances.end(); ++it)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 assert(instances_[*it] != NULL);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
298 const DicomInstanceParameters& instance = *instances_[*it];
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
299
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 std::string sopInstanceUid;
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
301 if (instance.GetGeometry().IsValid() &&
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 instance.GetTags().LookupStringValue(
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 {
1630
78509230f0d7 SortedFrames sharing code with CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1605
diff changeset
305 double p = LinearAlgebra::DotProduct(meanNormal, instance.GetGeometry().GetOrigin());
1605
b3c439d96d3e warning fix
Benjamin Golinvaux <bgo@osimis.io>
parents: 1602
diff changeset
306 items.push_back(SortableItem<float>(static_cast<float>(p), *it, sopInstanceUid));
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 assert(items.size() <= n);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 std::sort(items.begin(), items.end());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 for (size_t i = 0; i < items.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 AddFramesOfInstance(remainingInstances, items[i].GetInstanceIndex());
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 size_t SortedFrames::GetFramesCount() const
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 if (sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 return frames_.size();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 else
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 "Sort() has not been called");
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334
1631
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
335 CoordinateSystem3D SortedFrames::GetFrameGeometry(size_t frameIndex) const
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
336 {
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
337 const Frame& frame = GetFrame(frameIndex);
1643
882e2253a90e replacing SortedFrames::Instance by DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1631
diff changeset
338 return frame.GetInstance().GetFrameGeometry(frame.GetFrameNumberInInstance());
1631
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
339 }
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
340
960bb5fcc440 SortedFrames::GetFrameGeometry()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1630
diff changeset
341
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
342 bool SortedFrames::LookupFrame(size_t& frameIndex,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
343 const std::string& sopInstanceUid,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
344 unsigned int frameNumber) const
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
345 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
346 if (sorted_)
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
347 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
348 FramesIndex::const_iterator found = framesIndex_.find(
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
349 std::make_pair(sopInstanceUid, frameNumber));
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
350
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
351 if (found == framesIndex_.end())
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
352 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
353 return false;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
354 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
355 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
356 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
357 frameIndex = found->second;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
358 return true;
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
359 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
360 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
361 else
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
362 {
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
363 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
364 "Sort() has not been called");
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
365 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
366 }
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
367
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
368
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 void SortedFrames::Sort()
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 if (!sorted_)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 size_t totalFrames = 0;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 std::set<size_t> remainingInstances;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 for (size_t i = 0; i < instances_.size(); i++)
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 assert(instances_[i] != NULL);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 totalFrames += instances_[i]->GetNumberOfFrames();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 remainingInstances.insert(i);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 frames_.clear();
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 frames_.reserve(totalFrames);
1602
b2941196cabf SortedFrames::LookupFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1600
diff changeset
386 framesIndex_.clear();
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_INSTANCE_NUMBER); // VR is "IS"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 SortUsingIntegerTag(remainingInstances, Orthanc::DICOM_TAG_IMAGE_INDEX); // VR is "US"
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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390 SortUsing3DLocation(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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391 SortUsingSopInstanceUid(remainingInstances);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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392
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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393 // The following could in theory happen if several instances
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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394 // have the same SOPInstanceUID, no ordering is available
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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395 for (std::set<size_t>::const_iterator it = remainingInstances.begin();
1571
85e117739eca cppcheck
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parents: 1512
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396 it != remainingInstances.end(); ++it)
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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397 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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398 AddFramesOfInstance(remainingInstances, *it);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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399 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
401 if (frames_.size() != totalFrames ||
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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402 !remainingInstances.empty())
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 {
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
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404 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
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405 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 sorted_ = true;
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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408 }
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 }
1648
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
410
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
411
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parents: 1643
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412 bool SortedFrames::FindClosestFrame(size_t& frameIndex,
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413 const Vector& point,
4a43106bc122 cross-hair starts to work
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parents: 1643
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414 double maximumDistance) const
4a43106bc122 cross-hair starts to work
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parents: 1643
diff changeset
415 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
416 if (sorted_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
417 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
418 if (frames_.empty())
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
419 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
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420 return false;
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
421 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
422 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
423 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
424 frameIndex = 0;
4a43106bc122 cross-hair starts to work
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parents: 1643
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425 double closestDistance = frames_[0].ComputeDistance(point);
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
426
4a43106bc122 cross-hair starts to work
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parents: 1643
diff changeset
427 for (size_t i = 1; i < frames_.size(); i++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
428 {
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parents: 1643
diff changeset
429 double d = frames_[i].ComputeDistance(point);
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
430 if (d < closestDistance)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
431 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
432 frameIndex = i;
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
433 closestDistance = d;
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
434 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
435 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
436
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
437 return (closestDistance <= maximumDistance);
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
438 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
439 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
440 else
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
441 {
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
442 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls,
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
443 "Sort() has not been called");
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
444 }
4a43106bc122 cross-hair starts to work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1643
diff changeset
445 }
1478
fab6c6e795a3 Framework/Toolbox/SortedFrames.cpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 }