annotate Framework/Toolbox/DicomStructureSet.cpp @ 1179:177e7d431cd1 broker

log scale in textures, remove redundant code for LUTs
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 20 Nov 2019 15:24:20 +0100
parents 3c7cdbf32e2a
children 9c8f557ea799
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
439
b70e9be013e4 preparing for 2019
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
10 * the License, or (at your option) any later version.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
15 * Affero General Public License for more details.
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
16 *
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "DicomStructureSet.h"
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
23 #include "DicomStructureSetUtils.h"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
159
0a73d76333db populating LinearAlgebra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 158
diff changeset
25 #include "../Toolbox/GeometryToolbox.h"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
27 #include <Core/Logging.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
28 #include <Core/OrthancException.h>
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
29 #include <Core/Toolbox.h>
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
30 #include <Plugins/Samples/Common/FullOrthancDataset.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
31 #include <Plugins/Samples/Common/DicomDatasetReader.h>
113
2eca030792aa using the Orthanc Framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 110
diff changeset
32
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
33 #if defined(_MSC_VER)
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
34 # pragma warning(push)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
35 # pragma warning(disable:4244)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
36 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
37
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
38 #include <limits>
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 #include <stdio.h>
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
40 #include <boost/geometry.hpp>
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
41 #include <boost/geometry/geometries/point_xy.hpp>
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
42 #include <boost/geometry/geometries/polygon.hpp>
137
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
43 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
44
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
45 #if defined(_MSC_VER)
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
46 # pragma warning(pop)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
47 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
48
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
49 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
50 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
51 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
52
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
53
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
54 static void Union(BoostMultiPolygon& output,
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
55 std::vector<BoostPolygon>& input)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
56 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
57 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
58 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
59 boost::geometry::correct(input[i]);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
60 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
61
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
62 if (input.size() == 0)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
63 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
64 output.clear();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
65 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
66 else if (input.size() == 1)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
67 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
68 output.resize(1);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
69 output[0] = input[0];
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
70 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
71 else
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
72 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
73 boost::geometry::union_(input[0], input[1], output);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
74
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
75 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
76 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
77 BoostMultiPolygon tmp;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
78 boost::geometry::union_(output, input[i], tmp);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
79 output = tmp;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
80 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
81 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
82 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
83
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
84 #if USE_BOOST_UNION_FOR_POLYGONS == 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
85
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
86 static BoostPolygon CreateRectangle(float x1, float y1,
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
87 float x2, float y2)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
88 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
89 BoostPolygon r;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
90 boost::geometry::append(r, BoostPoint(x1, y1));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
91 boost::geometry::append(r, BoostPoint(x1, y2));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
92 boost::geometry::append(r, BoostPoint(x2, y2));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
93 boost::geometry::append(r, BoostPoint(x2, y1));
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
94 return r;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
95 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
96
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
97 #else
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
98
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
99 namespace OrthancStone
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
100 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
101 static RtStructRectangleInSlab CreateRectangle(float x1, float y1,
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
102 float x2, float y2)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
103 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
104 RtStructRectangleInSlab rect;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
105 rect.xmin = std::min(x1, x2);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
106 rect.xmax = std::max(x1, x2);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
107 rect.ymin = std::min(y1, y2);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
108 rect.ymax = std::max(y1, y2);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
109 return rect;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
110 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
111
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
112 bool CompareRectanglesForProjection(const std::pair<RtStructRectangleInSlab,double>& r1, const std::pair<RtStructRectangleInSlab, double>& r2)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
113 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
114 return r1.second < r2.second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
115 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
116
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
117 bool CompareSlabsY(const RtStructRectanglesInSlab& r1, const RtStructRectanglesInSlab& r2)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
118 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
119 if ((r1.size() == 0) || (r2.size() == 0))
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
120 return false;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
121
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
122 return r1[0].ymax < r2[0].ymax;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
123 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
124 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
125
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
126 #endif
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
130 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
131 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
132 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
133 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
134 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
135 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
136 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
137 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
138 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
139 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
140 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
141 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 static uint8_t ConvertColor(double v)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 if (v < 0)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 return 0;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 else if (v >= 255)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 return 255;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 else
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 return static_cast<uint8_t>(v);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
161 static bool ParseVector(Vector& target,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
162 const OrthancPlugins::IDicomDataset& dataset,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
163 const OrthancPlugins::DicomPath& tag)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 {
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
165 std::string value;
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
166 return (dataset.GetStringValue(value, tag) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
167 LinearAlgebra::ParseVector(target, value));
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
168 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
170 void DicomStructureSet::Polygon::CheckPointIsOnSlice(const Vector& v) const
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
171 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
172 if (hasSlice_)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
174 double magnitude =
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
175 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
176 if(!LinearAlgebra::IsNear(
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
177 magnitude,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
178 projectionAlongNormal_,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
179 sliceThickness_ / 2.0 /* in mm */ ))
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
180 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
181 LOG(ERROR) << "This RT-STRUCT contains a point that is off the "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
182 << "slice of its instance | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
183 << "magnitude = " << magnitude << " | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
184 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
185 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
186
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
187 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
188 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
190 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191
988
4c9b4c4de814 Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
192 bool DicomStructureSet::Polygon::IsPointOnSliceIfAny(const Vector& v) const
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
193 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
194 if (hasSlice_)
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
195 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
196 double magnitude =
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
197 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
198 bool onSlice = LinearAlgebra::IsNear(
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
199 magnitude,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
200 projectionAlongNormal_,
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
201 sliceThickness_ / 2.0 /* in mm */);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
202 if (!onSlice)
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
203 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
204 LOG(WARNING) << "This RT-STRUCT contains a point that is off the "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
205 << "slice of its instance | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
206 << "magnitude = " << magnitude << " | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
207 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
208 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
209 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
210 return onSlice;
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
211 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
212 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
213 {
988
4c9b4c4de814 Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
214 return true;
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
215 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
216 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
218 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
219 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
220 #if 1
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
221 // BGO 2019-09-03
988
4c9b4c4de814 Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
222 if (IsPointOnSliceIfAny(v))
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
223 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
224 points_.push_back(v);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
225 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
226 #else
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
227 CheckPoint(v);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
228 points_.push_back(v);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
229 #endif
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
230 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
231
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
232
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
233 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
234 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
235 if (hasSlice_)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
237 return true;
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
238 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
239 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
240 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
241 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
242
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
243 if (it == slices.end())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
244 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
245 return false;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
246 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
247 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
248 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
249 const CoordinateSystem3D& geometry = it->second.geometry_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
250
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
251 hasSlice_ = true;
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
252 geometry_ = geometry;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
253 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
254 sliceThickness_ = it->second.thickness_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
256 extent_.Reset();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
257
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
258 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
259 {
988
4c9b4c4de814 Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
260 if (IsPointOnSliceIfAny(*it))
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
261 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
262 double x, y;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
263 geometry.ProjectPoint2(x, y, *it);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
264 extent_.AddPoint(x, y);
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
265 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
266 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
267 return true;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
268 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
272 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
273 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
274 bool isOpposite = false;
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
275
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
276 if (points_.empty() ||
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
277 !hasSlice_ ||
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
278 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
279 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
280 return false;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
281 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
282
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
283 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
284
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
285 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
286 sliceThickness_ / 2.0));
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
287 }
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
288
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
289 bool DicomStructureSet::Polygon::Project(double& x1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
290 double& y1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
291 double& x2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
292 double& y2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
293 const CoordinateSystem3D& slice) const
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
294 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
295 // TODO: optimize this method using a sweep-line algorithm for polygons
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
296
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
297 if (!hasSlice_ ||
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
298 points_.size() <= 1)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
299 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
300 return false;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
301 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
302
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
303 double x, y;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
304 geometry_.ProjectPoint2(x, y, slice.GetOrigin());
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
305
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
306 bool isOpposite;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
307 if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
308 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
309 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
310 // plane is constant Y
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
311
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
312 if (y < extent_.GetY1() ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
313 y > extent_.GetY2())
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
314 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
315 // The polygon does not intersect the input slice
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
316 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
317 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
318
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
319 bool isFirst = true;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
320 double xmin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
321 double xmax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
322
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
323 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
324 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
325
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
326 for (size_t i = 0; i < points_.size(); i++)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
327 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
328 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
329 double curX, curY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
330 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
331
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
332 // if prev* and cur* are on opposite sides of y, this means that the
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
333 // segment intersects the plane.
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
334 if ((prevY < y && curY > y) ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
335 (prevY > y && curY < y))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
336 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
337 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
338 xmin = std::min(xmin, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
339 xmax = std::max(xmax, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
340 isFirst = false;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
341
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
342 // xmin and xmax represent the extent of the rectangle along the
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
343 // intersection between the plane and the polygon geometry
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
344
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
345 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
346
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
347 prevX = curX;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
348 prevY = curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
349 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
350
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
351 // if NO segment intersects the plane
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
352 if (isFirst)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
353 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
354 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
355 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
356 else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
357 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
358 // y is the plane y coord in the polygon geometry
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
359 // xmin and xmax are ALSO expressed in the polygon geometry
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
360
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
361 // let's convert them to 3D world geometry...
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
362 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
363 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
364 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
365 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
366
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
367 // then to the cutting plane geometry...
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
368 slice.ProjectPoint2(x1, y1, p1);
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
369 slice.ProjectPoint2(x2, y2, p2);
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
370 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
371 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
372 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
373 else if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
374 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
375 {
1170
1644de437a7b fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
376 // plane is constant X => Sagittal view (remember that in the
1644de437a7b fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
377 // sagittal projection, the normal must be swapped)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
378
1170
1644de437a7b fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
379
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
380 /*
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
381 Please read the comments in the section above, by taking into account
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
382 the fact that, in this case, the plane has a constant X, not Y (in
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
383 polygon geometry_ coordinates)
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
384 */
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
385
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
386 if (x < extent_.GetX1() ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
387 x > extent_.GetX2())
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
388 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
389 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
390 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
391
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
392 bool isFirst = true;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
393 double ymin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
394 double ymax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
395
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
396 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
397 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
398
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
399 for (size_t i = 0; i < points_.size(); i++)
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
400 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
401 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
402 double curX, curY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
403 geometry_.ProjectPoint2(curX, curY, points_[i]);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
404
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
405 if ((prevX < x && curX > x) ||
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
406 (prevX > x && curX < x))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
407 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
408 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
409 ymin = std::min(ymin, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
410 ymax = std::max(ymax, p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
411 isFirst = false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
412 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
413
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
414 prevX = curX;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
415 prevY = curY;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
416 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
417
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
418 if (isFirst)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
419 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
420 return false;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
421 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
422 else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
423 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
424 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
425 sliceThickness_ / 2.0 * geometry_.GetNormal());
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
426 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
427 sliceThickness_ / 2.0 * geometry_.GetNormal());
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
428
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
429 slice.ProjectPoint2(x1, y1, p1);
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
430 slice.ProjectPoint2(x2, y2, p2);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
431
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
432 return true;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
433 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
434 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
435 else
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
436 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
437 // Should not happen
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
438 return false;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
439 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
440 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
441
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
442
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 if (index >= structures_.size())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 {
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
447 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
454 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 {
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
456 if (index >= structures_.size())
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
457 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
458 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 return structures_[index];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
464 DicomStructureSet::DicomStructureSet(const OrthancPlugins::FullOrthancDataset& tags)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 {
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
466 OrthancPlugins::DicomDatasetReader reader(tags);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
467
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
468 size_t count, tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
469 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
470 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
471 tmp != count ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
472 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
473 tmp != count)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
478 structures_.resize(count);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
479 for (size_t i = 0; i < count; i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
480 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
481 structures_[i].interpretation_ = reader.GetStringValue
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
482 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
483 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
484 "No interpretation");
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
486 structures_[i].name_ = reader.GetStringValue
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
487 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
488 DICOM_TAG_ROI_NAME),
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 841
diff changeset
489 "No name");
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 Vector color;
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
492 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
493 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
494 color.size() == 3)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
496 structures_[i].red_ = ConvertColor(color[0]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
497 structures_[i].green_ = ConvertColor(color[1]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
498 structures_[i].blue_ = ConvertColor(color[2]);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
499 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
500 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
501 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
502 structures_[i].red_ = 255;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
503 structures_[i].green_ = 0;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
504 structures_[i].blue_ = 0;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
507 size_t countSlices;
738
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
508 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 516
diff changeset
509 DICOM_TAG_CONTOUR_SEQUENCE)))
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
510 {
121
e66b2c757790 displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
511 countSlices = 0;
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
512 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513
841
266e2b0b9abc better error reporting in DicomStructureSetLoader + fixed POST request logic
Benjamin Golinvaux <bgo@osimis.io>
parents: 804
diff changeset
514 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
515 << "\" with interpretation \"" << structures_[i].interpretation_
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
516 << "\" containing " << countSlices << " slices (color: "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
517 << static_cast<int>(structures_[i].red_) << ","
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
518 << static_cast<int>(structures_[i].green_) << ","
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
519 << static_cast<int>(structures_[i].blue_) << ")";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
521 // These temporary variables avoid allocating many vectors in the loop below
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
522 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
523 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
524 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
525
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
526 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
527 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
528 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
529
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
530 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
531 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
532 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
533
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
534 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
535 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
536 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
537 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
538 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
539
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
540 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
541 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
542 DICOM_TAG_CONTOUR_DATA);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
543
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
544 for (size_t j = 0; j < countSlices; j++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 {
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
546 unsigned int countPoints;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
548 countPointsPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
549 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
550 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
551 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
552 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
553
121
e66b2c757790 displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
554 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
556 geometricTypePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
557 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
558 if (type != "CLOSED_PLANAR")
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 {
173
6b0411ac843a fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
560 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
6b0411ac843a fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
561 continue;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
562 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
564 size_t size;
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
565
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
566 imageSequencePath.SetPrefixIndex(1, j);
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
567 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
568 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
569 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572
786
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
573 referencedInstancePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
574 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
575
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
576 contourDataPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 738
diff changeset
577 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 Vector points;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
580 if (!LinearAlgebra::ParseVector(points, slicesData) ||
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
581 points.size() != 3 * countPoints)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
586 // seen in real world
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
587 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
588 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
589 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
590 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
591
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
592 Polygon polygon(sopInstanceUid);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
593 polygon.Reserve(countPoints);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
595 for (size_t k = 0; k < countPoints; k++)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 Vector v(3);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 v[0] = points[3 * k];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 v[1] = points[3 * k + 1];
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 v[2] = points[3 * k + 2];
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
601 polygon.AddPoint(v);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 const Structure& structure = GetStructure(index);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 Vector center;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
615 LinearAlgebra::AssignVector(center, 0, 0, 0);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 if (structure.polygons_.empty())
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
626 if (!polygon->GetPoints().empty())
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
628 center += polygon->GetPoints().front() / n;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
632 return center;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 const std::string& DicomStructureSet::GetStructureName(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 return GetStructure(index).name_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 return GetStructure(index).interpretation_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
648 Color DicomStructureSet::GetStructureColor(size_t index) const
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
649 {
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
650 const Structure& s = GetStructure(index);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
651 return Color(s.red_, s.green_, s.blue_);
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
652 }
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
653
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
654
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 void DicomStructureSet::GetStructureColor(uint8_t& red,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 uint8_t& green,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657 uint8_t& blue,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658 size_t index) const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
660 const Structure& s = GetStructure(index);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
661 red = s.red_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
662 green = s.green_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
663 blue = s.blue_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
664 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
665
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
666
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
667 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
668 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669 for (Structures::const_iterator structure = structures_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 structure != structures_.end(); ++structure)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
671 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
672 for (Polygons::const_iterator polygon = structure->polygons_.begin();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
673 polygon != structure->polygons_.end(); ++polygon)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
675 instances.insert(polygon->GetSopInstanceUid());
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
676 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
677 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
678 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
679
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
680
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
681 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
682 const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
683 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
684 double thickness)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
685 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
686 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
687 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
688 // This geometry is already known
956
a7351ad54960 Made IsContextLost automatically set the flag by checking with the emscripten
Benjamin Golinvaux <bgo@osimis.io>
parents: 949
diff changeset
689 LOG(ERROR) << "DicomStructureSet::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid;
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
690
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
691 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
692 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
693 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
694 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
695 if (thickness < 0)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
696 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
697 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
698 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
699
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
700 if (!referencedSlices_.empty())
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
701 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
702 const ReferencedSlice& reference = referencedSlices_.begin()->second;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
703
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
704 if (reference.seriesInstanceUid_ != seriesInstanceUid)
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
706 LOG(ERROR) << "This RT-STRUCT refers to several different series";
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
707 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
708 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
710 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
711 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
712 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
713 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
714 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
715 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
716
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
717 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
718
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
719 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
720 structure != structures_.end(); ++structure)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
721 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
722 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
723 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
724 {
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
725 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
726 }
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
727 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
728 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
729 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
730
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
731
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
732 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
733 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
734 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
735
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
736 double thickness = 1; // 1 mm by default
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
738 std::string s;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
739 Vector v;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
740 if (dataset.LookupStringValue(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
741 LinearAlgebra::ParseVector(v, s) &&
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
742 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
743 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
744 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
745 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
746
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
747 std::string instance, series;
994
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
748 if (dataset.LookupStringValue(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
1f74bc3459ba fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 988
diff changeset
749 dataset.LookupStringValue(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
750 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
751 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
752 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
753 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
754 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
755 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
756 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
757 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
758
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
759
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
760 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
761 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
762 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
763 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
764 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
765 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
766 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
767 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
768 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
769 {
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
770 std::string sopInstanceUid = polygon->GetSopInstanceUid();
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
771 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
772 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
773 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
774 << " missing information about referenced instance "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
775 << "(sopInstanceUid is empty!)";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
776 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
777 else
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
778 {
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
779 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): "
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
780 << " missing information about referenced instance "
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
781 << "(sopInstanceUid = " << sopInstanceUid << ")";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
782 }
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 959
diff changeset
783 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
785 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
786 }
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
787 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
788
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
789
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
790 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
791 {
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
792 if (referencedSlices_.empty())
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
793 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
794 Vector v;
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 137
diff changeset
795 LinearAlgebra::AssignVector(v, 0, 0, 1);
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
796 return v;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
797 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
798 else
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
799 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
800 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
801 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
802 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
803
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
804 bool DicomStructureSet::ProjectStructure(
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
805 #if USE_BOOST_UNION_FOR_POLYGONS == 1
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
806 std::vector< std::vector<Point2D> >& polygons,
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
807 #else
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
808 std::vector< std::pair<Point2D, Point2D> >& segments,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
809 #endif
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
810 const Structure& structure,
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
811 const CoordinateSystem3D& sourceSlice) const
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
812 {
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
813 const CoordinateSystem3D slice = CoordinateSystem3D::NormalizeCuttingPlane(sourceSlice);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
814
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
815 #if USE_BOOST_UNION_FOR_POLYGONS == 1
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
816 polygons.clear();
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
817 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
818 segments.clear();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
819 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
820
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
821 Vector normal = GetNormal();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
822
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
823 bool isOpposite;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
824 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
825 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
826 // This is an axial projection
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
827
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
828 for (Polygons::const_iterator polygon = structure.polygons_.begin();
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
829 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
830 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
831 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
832 {
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
833 #if USE_BOOST_UNION_FOR_POLYGONS == 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
834 polygons.push_back(std::vector<Point2D>());
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
835
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
836 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
837 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
838 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
839 double x, y;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
840 slice.ProjectPoint2(x, y, *p);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
841 polygons.back().push_back(Point2D(x, y));
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
842 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
843 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
844 // we need to add all the segments corresponding to this polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
845 const std::vector<Vector>& points3D = polygon->GetPoints();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
846 if (points3D.size() >= 3)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
847 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
848 Point2D prev2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
849 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
850 Vector prev = points3D[0];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
851 double prevX, prevY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
852 slice.ProjectPoint2(prevX, prevY, prev);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
853 prev2D = Point2D(prevX, prevY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
854 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
855
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
856 size_t pointCount = points3D.size();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
857 for (size_t ipt = 1; ipt < pointCount; ++ipt)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
858 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
859 Vector next = points3D[ipt];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
860 double nextX, nextY;
1013
53cc787bd7bc - Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
861 slice.ProjectPoint2(nextX, nextY, next);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
862 Point2D next2D(nextX, nextY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
863 segments.push_back(std::pair<Point2D, Point2D>(prev2D, next2D));
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
864 prev2D = next2D;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
865 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
866 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
867 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
868 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
869 LOG(ERROR) << "Contour with less than 3 points!";
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
870 // !!!
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
871 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
872 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
873 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
874 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
875
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
876 return true;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
877 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
878 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) ||
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
879 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
880 {
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
881 #if 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
882 // Sagittal or coronal projection
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
883
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
884 #if USE_BOOST_UNION_FOR_POLYGONS == 1
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
885 std::vector<BoostPolygon> projected;
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
886
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
887 for (Polygons::const_iterator polygon = structure.polygons_.begin();
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
888 polygon != structure.polygons_.end(); ++polygon)
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
889 {
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
890 double x1, y1, x2, y2;
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
891
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
892 if (polygon->Project(x1, y1, x2, y2, slice))
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
893 {
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
894 projected.push_back(CreateRectangle(x1, y1, x2, y2));
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
895 }
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
896 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
897 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
898 // this will contain the intersection of the polygon slab with
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
899 // the cutting plane, projected on the cutting plane coord system
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
900 // (that yields a rectangle) + the Z coordinate of the polygon
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
901 // (this is required to group polygons with the same Z later)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
902 std::vector<std::pair<RtStructRectangleInSlab, double> > projected;
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
903
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
904 for (Polygons::const_iterator polygon = structure.polygons_.begin();
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
905 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
906 {
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
907 double x1, y1, x2, y2;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
908
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
909 if (polygon->Project(x1, y1, x2, y2, slice))
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
910 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
911 double curZ = polygon->GetGeometryOrigin()[2];
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
912
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
913 // x1,y1 and x2,y2 are in "slice" coordinates (the cutting plane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
914 // geometry)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
915 projected.push_back(std::make_pair(CreateRectangle(
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
916 static_cast<float>(x1),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
917 static_cast<float>(y1),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
918 static_cast<float>(x2),
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
919 static_cast<float>(y2)),curZ));
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
920 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
921 }
1162
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
922 #endif
709aa65aca17 recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1013
diff changeset
923
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
924 #if USE_BOOST_UNION_FOR_POLYGONS != 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
925 // projected contains a set of rectangles specified by two opposite
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
926 // corners (x1,y1,x2,y2)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
927 // we need to merge them
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
928 // each slab yields ONE polygon!
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
929
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
930 // we need to sorted all the rectangles that originate from the same Z
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
931 // into lanes. To make sure they are grouped together in the array, we
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
932 // sort it.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
933 std::sort(projected.begin(), projected.end(), CompareRectanglesForProjection);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
934
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
935 std::vector<RtStructRectanglesInSlab> rectanglesForEachSlab;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
936 rectanglesForEachSlab.reserve(projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
937
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
938 double curZ = 0;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
939 for (size_t i = 0; i < projected.size(); ++i)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
940 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
941 #if 0
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
942 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
943 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
944 if (i == 0)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
945 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
946 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
947 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
948 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
949 else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
950 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
951 // this check is needed to prevent creating a new slab if
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
952 // the new polygon is at the same Z coord than last one
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
953 if (!LinearAlgebra::IsNear(curZ, projected[i].second))
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
954 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
955 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
956 curZ = projected[i].second;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
957 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
958 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
959 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
960
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
961 rectanglesForEachSlab.back().push_back(projected[i].first);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
962
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
963 // as long as they have the same y, we should put them into the same lane
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
964 // BUT in Sebastien's code, there is only one polygon per lane.
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
965
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
966 //std::cout << "rect: xmin = " << rect.xmin << " xmax = " << rect.xmax << " ymin = " << rect.ymin << " ymax = " << rect.ymax << std::endl;
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
967 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
968
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
969 // now we need to sort the slabs in increasing Y order (see ConvertListOfSlabsToSegments)
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
970 std::sort(rectanglesForEachSlab.begin(), rectanglesForEachSlab.end(), CompareSlabsY);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
971
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
972 ConvertListOfSlabsToSegments(segments, rectanglesForEachSlab, projected.size());
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
973 #else
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
974 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
975 Union(merged, projected);
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
976
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
977 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
978 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
979 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
980 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
981
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
982 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
983 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
984 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
985 polygons[i][j] = Point2D(outer[j].x(), outer[j].y());
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
986 }
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
987 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
988 #endif
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
989
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
990 #else
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
991 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
992 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
993 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
994 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
995 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
996 {
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
997 std::vector<Point2D> p(4);
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
998 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
999 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1000 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1001 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1002 polygons.push_back(p);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1003 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1004 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
1005 #endif
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1006
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
1007 return true;
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1008 }
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1009 else
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1010 {
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1011 return false;
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
1012 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1013 }
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1014
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1015
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1016 void DicomStructureSet::ProjectOntoLayer(PolylineSceneLayer& layer,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1017 const CoordinateSystem3D& plane,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1018 size_t structureIndex,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1019 const Color& color) const
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1020 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1021 #if USE_BOOST_UNION_FOR_POLYGONS == 1
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1022 std::vector< std::vector<Point2D> > polygons;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1023 if (ProjectStructure(polygons, structureIndex, plane))
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1024 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1025 for (size_t j = 0; j < polygons.size(); j++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1026 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1027 std::vector<ScenePoint2D> chain;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1028 chain.reserve(polygons[j].size());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1029
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1030 for (size_t k = 0; k < polygons[j].size(); k++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1031 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1032 chain.push_back(ScenePoint2D(polygons[j][k].x, polygons[j][k].y));
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1033 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1034
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1035 layer.AddChain(chain, true, color.GetRed(), color.GetGreen(), color.GetBlue());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1036 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1037 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1038
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1039 #else
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1040 std::vector< std::pair<Point2D, Point2D> > segments;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1041
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1042 if (ProjectStructure(segments, structureIndex, plane))
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1043 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1044 for (size_t j = 0; j < segments.size(); j++)
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1045 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1046 std::vector<ScenePoint2D> chain(2);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1047 chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1048 chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y);
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1049 layer.AddChain(chain, false, color.GetRed(), color.GetGreen(), color.GetBlue());
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1050 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1051 }
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1052 #endif
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
1053 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054 }