Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/DicomStructureSet.cpp @ 1829:1623146decea
todo
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Thu, 27 May 2021 11:19:38 +0200 |
parents | 34ab7f643327 |
children | 126522623e20 |
rev | line source |
---|---|
0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
1739
9ac2a65d4172
upgrade to year 2021
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1610
diff
changeset
|
5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
8 * modify it under the terms of the GNU Lesser General Public License |
47 | 9 * as published by the Free Software Foundation, either version 3 of |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
15 * Lesser General Public License for more details. |
1596
4fb8fdf03314
removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1571
diff
changeset
|
16 * |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
17 * You should have received a copy of the GNU Lesser General Public |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
18 * License along with this program. If not, see |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
19 * <http://www.gnu.org/licenses/>. |
0 | 20 **/ |
21 | |
22 | |
23 #include "DicomStructureSet.h" | |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
24 #include "DicomStructureSetUtils.h" |
0 | 25 |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
26 #include "GeometryToolbox.h" |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
27 #include "GenericToolbox.h" |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
28 |
1504 | 29 #include "OrthancDatasets/DicomDatasetReader.h" |
0 | 30 |
1455
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
31 #include <Logging.h> |
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
32 #include <OrthancException.h> |
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
33 #include <Toolbox.h> |
113
2eca030792aa
using the Orthanc Framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
110
diff
changeset
|
34 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
35 #if defined(_MSC_VER) |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
36 # pragma warning(push) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
37 # pragma warning(disable:4244) |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
38 #endif |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
39 |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
40 #if STONE_TIME_BLOCKING_OPS |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
41 # include <boost/date_time/posix_time/posix_time.hpp> |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
42 #endif |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
43 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
44 #include <limits> |
0 | 45 #include <stdio.h> |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
46 #include <boost/geometry.hpp> |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
47 #include <boost/geometry/geometries/point_xy.hpp> |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
48 #include <boost/geometry/geometries/polygon.hpp> |
137 | 49 #include <boost/geometry/multi/geometries/multi_polygon.hpp> |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
50 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
51 #if defined(_MSC_VER) |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
52 # pragma warning(pop) |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
53 #endif |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
54 |
1180
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
55 #if ORTHANC_ENABLE_DCMTK == 1 |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
56 # include "ParsedDicomDataset.h" |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
57 #endif |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
58 |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
59 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
60 typedef boost::geometry::model::d2::point_xy<double> BoostPoint; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
61 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
62 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
63 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
64 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
65 static void Union(BoostMultiPolygon& output, |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
66 std::vector<BoostPolygon>& input) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
67 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
68 for (size_t i = 0; i < input.size(); i++) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
69 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
70 boost::geometry::correct(input[i]); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
71 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
72 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
73 if (input.size() == 0) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
74 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
75 output.clear(); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
76 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
77 else if (input.size() == 1) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
78 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
79 output.resize(1); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
80 output[0] = input[0]; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
81 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
82 else |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
83 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
84 boost::geometry::union_(input[0], input[1], output); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
85 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
86 for (size_t i = 0; i < input.size(); i++) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
87 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
88 BoostMultiPolygon tmp; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
89 boost::geometry::union_(output, input[i], tmp); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
90 output = tmp; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
91 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
92 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
93 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
94 |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
95 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
96 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
97 static BoostPolygon CreateRectangle(float x1, float y1, |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
98 float x2, float y2) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
99 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
100 BoostPolygon r; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
101 boost::geometry::append(r, BoostPoint(x1, y1)); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
102 boost::geometry::append(r, BoostPoint(x1, y2)); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
103 boost::geometry::append(r, BoostPoint(x2, y2)); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
104 boost::geometry::append(r, BoostPoint(x2, y1)); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
105 return r; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
106 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
107 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
108 #else |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
109 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
110 namespace OrthancStone |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
111 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
112 static RtStructRectangleInSlab CreateRectangle(float x1, float y1, |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
113 float x2, float y2) |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
114 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
115 RtStructRectangleInSlab rect; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
116 rect.xmin = std::min(x1, x2); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
117 rect.xmax = std::max(x1, x2); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
118 rect.ymin = std::min(y1, y2); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
119 rect.ymax = std::max(y1, y2); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
120 return rect; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
121 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
122 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
123 bool CompareRectanglesForProjection(const std::pair<RtStructRectangleInSlab,double>& r1, const std::pair<RtStructRectangleInSlab, double>& r2) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
124 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
125 return r1.second < r2.second; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
126 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
127 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
128 bool CompareSlabsY(const RtStructRectanglesInSlab& r1, const RtStructRectanglesInSlab& r2) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
129 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
130 if ((r1.size() == 0) || (r2.size() == 0)) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
131 return false; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
132 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
133 return r1[0].ymax < r2[0].ymax; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
134 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
135 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
136 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
137 #endif |
0 | 138 |
139 namespace OrthancStone | |
140 { | |
1504 | 141 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042); |
142 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016); | |
143 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040); | |
144 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050); | |
145 static const Orthanc::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046); | |
146 static const Orthanc::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155); | |
147 static const Orthanc::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039); | |
148 static const Orthanc::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a); | |
149 static const Orthanc::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026); | |
150 static const Orthanc::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4); | |
151 static const Orthanc::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080); | |
152 static const Orthanc::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020); | |
0 | 153 |
154 | |
155 static uint8_t ConvertColor(double v) | |
156 { | |
157 if (v < 0) | |
158 { | |
159 return 0; | |
160 } | |
161 else if (v >= 255) | |
162 { | |
163 return 255; | |
164 } | |
165 else | |
166 { | |
167 return static_cast<uint8_t>(v); | |
168 } | |
169 } | |
170 | |
171 | |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
172 static bool FastParseVector(Vector& target, |
1504 | 173 const IDicomDataset& dataset, |
174 const DicomPath& tag) | |
0 | 175 { |
118
a4d0b6c82b29
using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
176 std::string value; |
a4d0b6c82b29
using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
177 return (dataset.GetStringValue(value, tag) && |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
178 GenericToolbox::FastParseVector(target, value)); |
118
a4d0b6c82b29
using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
179 } |
0 | 180 |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
181 void DicomStructureSet::Polygon::CheckPointIsOnSlice(const Vector& v) const |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
182 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
183 if (hasSlice_) |
0 | 184 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
185 double magnitude = |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
186 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal()); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
187 if(!LinearAlgebra::IsNear( |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
188 magnitude, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
189 projectionAlongNormal_, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
190 sliceThickness_ / 2.0 /* in mm */ )) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
191 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
192 LOG(ERROR) << "This RT-STRUCT contains a point that is off the " |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
193 << "slice of its instance | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
194 << "magnitude = " << magnitude << " | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
195 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
196 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0); |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
197 |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
198 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
199 } |
0 | 200 } |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
201 } |
0 | 202 |
988
4c9b4c4de814
Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents:
981
diff
changeset
|
203 bool DicomStructureSet::Polygon::IsPointOnSliceIfAny(const Vector& v) const |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
204 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
205 if (hasSlice_) |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
206 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
207 double magnitude = |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
208 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal()); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
209 bool onSlice = LinearAlgebra::IsNear( |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
210 magnitude, |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
211 projectionAlongNormal_, |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
212 sliceThickness_ / 2.0 /* in mm */); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
213 if (!onSlice) |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
214 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
215 LOG(WARNING) << "This RT-STRUCT contains a point that is off the " |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
216 << "slice of its instance | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
217 << "magnitude = " << magnitude << " | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
218 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
219 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0); |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
220 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
221 return onSlice; |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
222 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
223 else |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
224 { |
988
4c9b4c4de814
Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents:
981
diff
changeset
|
225 return true; |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
226 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
227 } |
0 | 228 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
229 void DicomStructureSet::Polygon::AddPoint(const Vector& v) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
230 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
231 #if 1 |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
232 // BGO 2019-09-03 |
988
4c9b4c4de814
Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents:
981
diff
changeset
|
233 if (IsPointOnSliceIfAny(v)) |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
234 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
235 points_.push_back(v); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
236 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
237 #else |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
238 CheckPoint(v); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
239 points_.push_back(v); |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
240 #endif |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
241 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
242 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
243 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
244 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
245 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
246 if (hasSlice_) |
0 | 247 { |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
248 return true; |
32 | 249 } |
250 else | |
251 { | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
252 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
253 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
254 if (it == slices.end()) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
255 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
256 return false; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
257 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
258 else |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
259 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
260 const CoordinateSystem3D& geometry = it->second.geometry_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
261 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
262 hasSlice_ = true; |
131 | 263 geometry_ = geometry; |
264 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal()); | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
265 sliceThickness_ = it->second.thickness_; |
0 | 266 |
1610
b7630b1a0253
ISceneLayer::GetBoundingBox() returns void
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1598
diff
changeset
|
267 extent_.Clear(); |
131 | 268 |
1571 | 269 for (Points::const_iterator it2 = points_.begin(); it2 != points_.end(); ++it2) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
270 { |
1571 | 271 if (IsPointOnSliceIfAny(*it2)) |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
272 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
273 double x, y; |
1571 | 274 geometry.ProjectPoint2(x, y, *it2); |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
275 extent_.AddPoint(x, y); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
276 } |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
277 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
278 return true; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
279 } |
0 | 280 } |
281 } | |
282 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
283 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
284 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
285 bool isOpposite = false; |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
286 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
287 if (points_.empty() || |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
288 !hasSlice_ || |
131 | 289 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal())) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
290 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
291 return false; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
292 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
293 |
131 | 294 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal()); |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
295 |
158
a053ca7fa5c6
LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
137
diff
changeset
|
296 return (LinearAlgebra::IsNear(d, projectionAlongNormal_, |
a053ca7fa5c6
LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
137
diff
changeset
|
297 sliceThickness_ / 2.0)); |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
298 } |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
299 |
131 | 300 bool DicomStructureSet::Polygon::Project(double& x1, |
301 double& y1, | |
302 double& x2, | |
303 double& y2, | |
304 const CoordinateSystem3D& slice) const | |
305 { | |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
306 // TODO: optimize this method using a sweep-line algorithm for polygons |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
307 |
131 | 308 if (!hasSlice_ || |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
309 points_.size() <= 1) |
131 | 310 { |
311 return false; | |
312 } | |
313 | |
314 double x, y; | |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
315 geometry_.ProjectPoint2(x, y, slice.GetOrigin()); |
131 | 316 |
317 bool isOpposite; | |
318 if (GeometryToolbox::IsParallelOrOpposite | |
319 (isOpposite, slice.GetNormal(), geometry_.GetAxisY())) | |
320 { | |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
321 // plane is constant Y |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
322 |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
323 if (y < extent_.GetY1() || |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
324 y > extent_.GetY2()) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
325 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
326 // The polygon does not intersect the input slice |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
327 return false; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
328 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
329 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
330 bool isFirst = true; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
331 double xmin = std::numeric_limits<double>::infinity(); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
332 double xmax = -std::numeric_limits<double>::infinity(); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
333 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
334 double prevX, prevY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
335 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
336 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
337 for (size_t i = 0; i < points_.size(); i++) |
131 | 338 { |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
339 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
340 double curX, curY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
341 geometry_.ProjectPoint2(curX, curY, points_[i]); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
342 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
343 // if prev* and cur* are on opposite sides of y, this means that the |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
344 // segment intersects the plane. |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
345 if ((prevY < y && curY > y) || |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
346 (prevY > y && curY < y)) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
347 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
348 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
349 xmin = std::min(xmin, p); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
350 xmax = std::max(xmax, p); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
351 isFirst = false; |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
352 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
353 // xmin and xmax represent the extent of the rectangle along the |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
354 // intersection between the plane and the polygon geometry |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
355 |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
356 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
357 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
358 prevX = curX; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
359 prevY = curY; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
360 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
361 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
362 // if NO segment intersects the plane |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
363 if (isFirst) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
364 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
365 return false; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
366 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
367 else |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
368 { |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
369 // y is the plane y coord in the polygon geometry |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
370 // xmin and xmax are ALSO expressed in the polygon geometry |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
371 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
372 // let's convert them to 3D world geometry... |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
373 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) + |
131 | 374 sliceThickness_ / 2.0 * geometry_.GetNormal()); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
375 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) - |
131 | 376 sliceThickness_ / 2.0 * geometry_.GetNormal()); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
377 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
378 // then to the cutting plane geometry... |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
379 slice.ProjectPoint2(x1, y1, p1); |
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
380 slice.ProjectPoint2(x2, y2, p2); |
131 | 381 return true; |
382 } | |
383 } | |
384 else if (GeometryToolbox::IsParallelOrOpposite | |
385 (isOpposite, slice.GetNormal(), geometry_.GetAxisX())) | |
386 { | |
1170
1644de437a7b
fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
387 // plane is constant X => Sagittal view (remember that in the |
1644de437a7b
fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
388 // sagittal projection, the normal must be swapped) |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
389 |
1170
1644de437a7b
fixes related to swapped normal in sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
390 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
391 /* |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
392 Please read the comments in the section above, by taking into account |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
393 the fact that, in this case, the plane has a constant X, not Y (in |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
394 polygon geometry_ coordinates) |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
395 */ |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
396 |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
397 if (x < extent_.GetX1() || |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
398 x > extent_.GetX2()) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
399 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
400 return false; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
401 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
402 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
403 bool isFirst = true; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
404 double ymin = std::numeric_limits<double>::infinity(); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
405 double ymax = -std::numeric_limits<double>::infinity(); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
406 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
407 double prevX, prevY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
408 geometry_.ProjectPoint2(prevX, prevY, points_[points_.size() - 1]); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
409 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
410 for (size_t i = 0; i < points_.size(); i++) |
131 | 411 { |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
412 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
413 double curX, curY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
414 geometry_.ProjectPoint2(curX, curY, points_[i]); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
415 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
416 if ((prevX < x && curX > x) || |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
417 (prevX > x && curX < x)) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
418 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
419 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
420 ymin = std::min(ymin, p); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
421 ymax = std::max(ymax, p); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
422 isFirst = false; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
423 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
424 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
425 prevX = curX; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
426 prevY = curY; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
427 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
428 |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
429 if (isFirst) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
430 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
431 return false; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
432 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
433 else |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
434 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
435 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) + |
131 | 436 sliceThickness_ / 2.0 * geometry_.GetNormal()); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
437 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) - |
131 | 438 sliceThickness_ / 2.0 * geometry_.GetNormal()); |
439 | |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
440 slice.ProjectPoint2(x1, y1, p1); |
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
441 slice.ProjectPoint2(x2, y2, p2); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
442 |
131 | 443 return true; |
444 } | |
445 } | |
446 else | |
447 { | |
448 // Should not happen | |
449 return false; | |
450 } | |
451 } | |
452 | |
453 | |
0 | 454 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const |
455 { | |
456 if (index >= structures_.size()) | |
457 { | |
125 | 458 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
0 | 459 } |
460 | |
461 return structures_[index]; | |
462 } | |
463 | |
464 | |
125 | 465 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) |
0 | 466 { |
125 | 467 if (index >= structures_.size()) |
468 { | |
469 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); | |
0 | 470 } |
471 | |
472 return structures_[index]; | |
473 } | |
474 | |
1504 | 475 void DicomStructureSet::Setup(const IDicomDataset& tags) |
0 | 476 { |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
477 #if STONE_TIME_BLOCKING_OPS |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
478 boost::posix_time::ptime timerStart = boost::posix_time::microsec_clock::universal_time(); |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
479 #endif |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
480 |
1504 | 481 DicomDatasetReader reader(tags); |
32 | 482 |
483 size_t count, tmp; | |
1571 | 484 if (!tags.GetSequenceSize(count, DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE)) || |
485 !tags.GetSequenceSize(tmp, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE)) || | |
32 | 486 tmp != count || |
1571 | 487 !tags.GetSequenceSize(tmp, DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE)) || |
32 | 488 tmp != count) |
0 | 489 { |
490 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
491 } | |
492 | |
32 | 493 structures_.resize(count); |
494 for (size_t i = 0; i < count; i++) | |
495 { | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
496 structures_[i].interpretation_ = reader.GetStringValue |
1504 | 497 (DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i, |
498 DICOM_TAG_RT_ROI_INTERPRETED_TYPE), | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
499 "No interpretation"); |
0 | 500 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
501 structures_[i].name_ = reader.GetStringValue |
1504 | 502 (DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i, |
503 DICOM_TAG_ROI_NAME), | |
949
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
841
diff
changeset
|
504 "No name"); |
0 | 505 |
506 Vector color; | |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
507 if (FastParseVector(color, tags, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
1504 | 508 DICOM_TAG_ROI_DISPLAY_COLOR)) && |
32 | 509 color.size() == 3) |
0 | 510 { |
32 | 511 structures_[i].red_ = ConvertColor(color[0]); |
512 structures_[i].green_ = ConvertColor(color[1]); | |
513 structures_[i].blue_ = ConvertColor(color[2]); | |
514 } | |
515 else | |
516 { | |
517 structures_[i].red_ = 255; | |
518 structures_[i].green_ = 0; | |
519 structures_[i].blue_ = 0; | |
0 | 520 } |
521 | |
32 | 522 size_t countSlices; |
1504 | 523 if (!tags.GetSequenceSize(countSlices, DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
524 DICOM_TAG_CONTOUR_SEQUENCE))) | |
32 | 525 { |
121
e66b2c757790
displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
118
diff
changeset
|
526 countSlices = 0; |
32 | 527 } |
0 | 528 |
841
266e2b0b9abc
better error reporting in DicomStructureSetLoader + fixed POST request logic
Benjamin Golinvaux <bgo@osimis.io>
parents:
804
diff
changeset
|
529 LOG(INFO) << "New RT structure: \"" << structures_[i].name_ |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
530 << "\" with interpretation \"" << structures_[i].interpretation_ |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
531 << "\" containing " << countSlices << " slices (color: " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
532 << static_cast<int>(structures_[i].red_) << "," |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
533 << static_cast<int>(structures_[i].green_) << "," |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
534 << static_cast<int>(structures_[i].blue_) << ")"; |
0 | 535 |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
536 // These temporary variables avoid allocating many vectors in the loop below |
1504 | 537 DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
538 DICOM_TAG_CONTOUR_SEQUENCE, 0, | |
539 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS); | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
540 |
1504 | 541 DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
542 DICOM_TAG_CONTOUR_SEQUENCE, 0, | |
543 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE); | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
544 |
1504 | 545 DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
546 DICOM_TAG_CONTOUR_SEQUENCE, 0, | |
547 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE); | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
548 |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
549 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155) |
1504 | 550 DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
551 DICOM_TAG_CONTOUR_SEQUENCE, 0, | |
552 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0, | |
553 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID); | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
554 |
1504 | 555 DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, |
556 DICOM_TAG_CONTOUR_SEQUENCE, 0, | |
557 DICOM_TAG_CONTOUR_DATA); | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
558 |
32 | 559 for (size_t j = 0; j < countSlices; j++) |
0 | 560 { |
32 | 561 unsigned int countPoints; |
0 | 562 |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
563 countPointsPath.SetPrefixIndex(1, j); |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
564 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath)) |
32 | 565 { |
566 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
567 } | |
568 | |
121
e66b2c757790
displaying rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
118
diff
changeset
|
569 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices"; |
0 | 570 |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
571 geometricTypePath.SetPrefixIndex(1, j); |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
572 std::string type = reader.GetMandatoryStringValue(geometricTypePath); |
32 | 573 if (type != "CLOSED_PLANAR") |
0 | 574 { |
173
6b0411ac843a
fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
159
diff
changeset
|
575 LOG(WARNING) << "Ignoring contour with geometry type: " << type; |
6b0411ac843a
fix captain rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
159
diff
changeset
|
576 continue; |
0 | 577 } |
578 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
579 size_t size; |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
580 |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
581 imageSequencePath.SetPrefixIndex(1, j); |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
582 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
583 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
584 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry."; |
0 | 585 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
586 } | |
587 | |
786
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
588 referencedInstancePath.SetPrefixIndex(1, j); |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
589 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath); |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
590 |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
591 contourDataPath.SetPrefixIndex(1, j); |
5aa728500586
optimizing constructor of DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
592 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath); |
0 | 593 |
594 Vector points; | |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
595 |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
596 if (!GenericToolbox::FastParseVector(points, slicesData) || |
32 | 597 points.size() != 3 * countPoints) |
0 | 598 { |
599 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
600 } | |
601 | |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
602 // seen in real world |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
603 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "") |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
604 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
605 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)"; |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
606 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
607 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
608 Polygon polygon(sopInstanceUid); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
609 polygon.Reserve(countPoints); |
0 | 610 |
32 | 611 for (size_t k = 0; k < countPoints; k++) |
0 | 612 { |
613 Vector v(3); | |
614 v[0] = points[3 * k]; | |
615 v[1] = points[3 * k + 1]; | |
616 v[2] = points[3 * k + 2]; | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
617 polygon.AddPoint(v); |
0 | 618 } |
619 | |
620 structures_[i].polygons_.push_back(polygon); | |
621 } | |
622 } | |
1751
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
623 #if STONE_TIME_BLOCKING_OPS |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
624 boost::posix_time::ptime timerEnd = boost::posix_time::microsec_clock::universal_time(); |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
625 boost::posix_time::time_duration duration = timerEnd - timerStart; |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
626 int64_t durationMs = duration.total_milliseconds(); |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
627 LOG(WARNING) << "DicomStructureSet::Setup took " << durationMs << " ms"; |
946eb7200b82
FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents:
1739
diff
changeset
|
628 #endif |
0 | 629 } |
630 | |
631 | |
1180
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
632 #if ORTHANC_ENABLE_DCMTK == 1 |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
633 DicomStructureSet::DicomStructureSet(Orthanc::ParsedDicomFile& instance) |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
634 { |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
635 ParsedDicomDataset dataset(instance); |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
636 Setup(dataset); |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
637 } |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
638 #endif |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
639 |
9c8f557ea799
ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1178
diff
changeset
|
640 |
0 | 641 Vector DicomStructureSet::GetStructureCenter(size_t index) const |
642 { | |
643 const Structure& structure = GetStructure(index); | |
644 | |
645 Vector center; | |
158
a053ca7fa5c6
LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
137
diff
changeset
|
646 LinearAlgebra::AssignVector(center, 0, 0, 0); |
0 | 647 if (structure.polygons_.empty()) |
648 { | |
649 return center; | |
650 } | |
651 | |
652 double n = static_cast<double>(structure.polygons_.size()); | |
653 | |
654 for (Polygons::const_iterator polygon = structure.polygons_.begin(); | |
655 polygon != structure.polygons_.end(); ++polygon) | |
656 { | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
657 if (!polygon->GetPoints().empty()) |
0 | 658 { |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
659 center += polygon->GetPoints().front() / n; |
0 | 660 } |
661 } | |
662 | |
663 return center; | |
664 } | |
665 | |
666 | |
667 const std::string& DicomStructureSet::GetStructureName(size_t index) const | |
668 { | |
669 return GetStructure(index).name_; | |
670 } | |
671 | |
672 | |
673 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const | |
674 { | |
675 return GetStructure(index).interpretation_; | |
676 } | |
677 | |
678 | |
804
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
679 Color DicomStructureSet::GetStructureColor(size_t index) const |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
680 { |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
681 const Structure& s = GetStructure(index); |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
682 return Color(s.red_, s.green_, s.blue_); |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
683 } |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
684 |
61ba4b504e9a
PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
794
diff
changeset
|
685 |
0 | 686 void DicomStructureSet::GetStructureColor(uint8_t& red, |
687 uint8_t& green, | |
688 uint8_t& blue, | |
689 size_t index) const | |
690 { | |
691 const Structure& s = GetStructure(index); | |
692 red = s.red_; | |
693 green = s.green_; | |
694 blue = s.blue_; | |
695 } | |
696 | |
697 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
698 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances) |
0 | 699 { |
700 for (Structures::const_iterator structure = structures_.begin(); | |
701 structure != structures_.end(); ++structure) | |
702 { | |
703 for (Polygons::const_iterator polygon = structure->polygons_.begin(); | |
704 polygon != structure->polygons_.end(); ++polygon) | |
705 { | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
706 instances.insert(polygon->GetSopInstanceUid()); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
707 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
708 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
709 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
710 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
711 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
712 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
713 const std::string& seriesInstanceUid, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
714 const CoordinateSystem3D& geometry, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
715 double thickness) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
716 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
717 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
718 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
719 // This geometry is already known |
956
a7351ad54960
Made IsContextLost automatically set the flag by checking with the emscripten
Benjamin Golinvaux <bgo@osimis.io>
parents:
949
diff
changeset
|
720 LOG(ERROR) << "DicomStructureSet::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid; |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
721 |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
722 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
723 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
724 else |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
725 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
726 if (thickness < 0) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
727 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
728 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
729 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
730 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
731 if (!referencedSlices_.empty()) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
732 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
733 const ReferencedSlice& reference = referencedSlices_.begin()->second; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
734 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
735 if (reference.seriesInstanceUid_ != seriesInstanceUid) |
0 | 736 { |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
737 LOG(ERROR) << "This RT-STRUCT refers to several different series"; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
738 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
739 } |
0 | 740 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
741 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal())) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
742 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
743 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel"; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
744 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
745 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
746 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
747 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
748 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness); |
0 | 749 |
131 | 750 for (Structures::iterator structure = structures_.begin(); |
751 structure != structures_.end(); ++structure) | |
752 { | |
753 for (Polygons::iterator polygon = structure->polygons_.begin(); | |
754 polygon != structure->polygons_.end(); ++polygon) | |
755 { | |
756 polygon->UpdateReferencedSlice(referencedSlices_); | |
757 } | |
758 } | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
759 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
760 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
761 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
762 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
763 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
764 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
765 CoordinateSystem3D slice(dataset); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
766 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
767 double thickness = 1; // 1 mm by default |
0 | 768 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
769 std::string s; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
770 Vector v; |
994
1f74bc3459ba
fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
988
diff
changeset
|
771 if (dataset.LookupStringValue(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) && |
158
a053ca7fa5c6
LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
137
diff
changeset
|
772 LinearAlgebra::ParseVector(v, s) && |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
773 v.size() > 0) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
774 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
775 thickness = v[0]; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
776 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
777 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
778 std::string instance, series; |
994
1f74bc3459ba
fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
988
diff
changeset
|
779 if (dataset.LookupStringValue(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) && |
1f74bc3459ba
fix build due to rename in Orthanc::DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
988
diff
changeset
|
780 dataset.LookupStringValue(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
781 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
782 AddReferencedSlice(instance, series, slice, thickness); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
783 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
784 else |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
785 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
786 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
787 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
788 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
789 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
790 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
791 void DicomStructureSet::CheckReferencedSlices() |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
792 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
793 for (Structures::iterator structure = structures_.begin(); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
794 structure != structures_.end(); ++structure) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
795 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
796 for (Polygons::iterator polygon = structure->polygons_.begin(); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
797 polygon != structure->polygons_.end(); ++polygon) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
798 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
799 if (!polygon->UpdateReferencedSlice(referencedSlices_)) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
800 { |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
801 std::string sopInstanceUid = polygon->GetSopInstanceUid(); |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
802 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "") |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
803 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
804 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): " |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
805 << " missing information about referenced instance " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
806 << "(sopInstanceUid is empty!)"; |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
807 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
808 else |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
809 { |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
810 LOG(ERROR) << "DicomStructureSet::CheckReferencedSlices(): " |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
811 << " missing information about referenced instance " |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
812 << "(sopInstanceUid = " << sopInstanceUid << ")"; |
981
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
813 } |
c20dbaab360c
Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents:
959
diff
changeset
|
814 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
0 | 815 } |
816 } | |
817 } | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
818 } |
0 | 819 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
820 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
821 Vector DicomStructureSet::GetNormal() const |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
822 { |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
823 if (referencedSlices_.empty()) |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
824 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
825 Vector v; |
158
a053ca7fa5c6
LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
137
diff
changeset
|
826 LinearAlgebra::AssignVector(v, 0, 0, 1); |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
827 return v; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
828 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
829 else |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
830 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
831 return referencedSlices_.begin()->second.geometry_.GetNormal(); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
832 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
833 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
121
diff
changeset
|
834 |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
835 bool DicomStructureSet::ProjectStructure( |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
836 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
837 std::vector< std::vector<Point2D> >& polygons, |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
838 #else |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
839 std::vector< std::pair<Point2D, Point2D> >& segments, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
840 #endif |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
841 const Structure& structure, |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
842 const CoordinateSystem3D& sourceSlice) const |
125 | 843 { |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
844 const CoordinateSystem3D slice = CoordinateSystem3D::NormalizeCuttingPlane(sourceSlice); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
845 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
846 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
125 | 847 polygons.clear(); |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
848 #else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
849 segments.clear(); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
850 #endif |
125 | 851 |
852 Vector normal = GetNormal(); | |
853 | |
854 bool isOpposite; | |
855 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal())) | |
856 { | |
857 // This is an axial projection | |
858 | |
794 | 859 for (Polygons::const_iterator polygon = structure.polygons_.begin(); |
125 | 860 polygon != structure.polygons_.end(); ++polygon) |
861 { | |
862 if (polygon->IsOnSlice(slice)) | |
863 { | |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
864 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
865 polygons.push_back(std::vector<Point2D>()); |
125 | 866 |
867 for (Points::const_iterator p = polygon->GetPoints().begin(); | |
868 p != polygon->GetPoints().end(); ++p) | |
869 { | |
870 double x, y; | |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
871 slice.ProjectPoint2(x, y, *p); |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
872 polygons.back().push_back(Point2D(x, y)); |
125 | 873 } |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
874 #else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
875 // we need to add all the segments corresponding to this polygon |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
876 const std::vector<Vector>& points3D = polygon->GetPoints(); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
877 if (points3D.size() >= 3) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
878 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
879 Point2D prev2D; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
880 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
881 Vector prev = points3D[0]; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
882 double prevX, prevY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
883 slice.ProjectPoint2(prevX, prevY, prev); |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
884 prev2D = Point2D(prevX, prevY); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
885 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
886 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
887 size_t pointCount = points3D.size(); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
888 for (size_t ipt = 1; ipt < pointCount; ++ipt) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
889 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
890 Vector next = points3D[ipt]; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
891 double nextX, nextY; |
1013
53cc787bd7bc
- Added an optimized ProjectPoint2 to CoordinateSystem3D. It has *not* replaced
Benjamin Golinvaux <bgo@osimis.io>
parents:
1006
diff
changeset
|
892 slice.ProjectPoint2(nextX, nextY, next); |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
893 Point2D next2D(nextX, nextY); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
894 segments.push_back(std::pair<Point2D, Point2D>(prev2D, next2D)); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
895 prev2D = next2D; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
896 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
897 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
898 else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
899 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
900 LOG(ERROR) << "Contour with less than 3 points!"; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
901 // !!! |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
902 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
903 #endif |
125 | 904 } |
905 } | |
906 | |
907 return true; | |
908 } | |
909 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) || | |
910 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY())) | |
911 { | |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
912 #if 1 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
913 // Sagittal or coronal projection |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
914 |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
915 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
916 std::vector<BoostPolygon> projected; |
1162
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
917 |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
918 for (Polygons::const_iterator polygon = structure.polygons_.begin(); |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
919 polygon != structure.polygons_.end(); ++polygon) |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
920 { |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
921 double x1, y1, x2, y2; |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
922 |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
923 if (polygon->Project(x1, y1, x2, y2, slice)) |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
924 { |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
925 projected.push_back(CreateRectangle(x1, y1, x2, y2)); |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
926 } |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
927 } |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
928 #else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
929 // this will contain the intersection of the polygon slab with |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
930 // the cutting plane, projected on the cutting plane coord system |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
931 // (that yields a rectangle) + the Z coordinate of the polygon |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
932 // (this is required to group polygons with the same Z later) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
933 std::vector<std::pair<RtStructRectangleInSlab, double> > projected; |
1162
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
934 |
794 | 935 for (Polygons::const_iterator polygon = structure.polygons_.begin(); |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
936 polygon != structure.polygons_.end(); ++polygon) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
937 { |
131 | 938 double x1, y1, x2, y2; |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
939 |
131 | 940 if (polygon->Project(x1, y1, x2, y2, slice)) |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
941 { |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
942 double curZ = polygon->GetGeometryOrigin()[2]; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
943 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
944 // x1,y1 and x2,y2 are in "slice" coordinates (the cutting plane |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
945 // geometry) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
946 projected.push_back(std::make_pair(CreateRectangle( |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
947 static_cast<float>(x1), |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
948 static_cast<float>(y1), |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
949 static_cast<float>(x2), |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
950 static_cast<float>(y2)),curZ)); |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
951 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
952 } |
1162
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
953 #endif |
709aa65aca17
recovery of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1013
diff
changeset
|
954 |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
955 #if USE_BOOST_UNION_FOR_POLYGONS != 1 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
956 // projected contains a set of rectangles specified by two opposite |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
957 // corners (x1,y1,x2,y2) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
958 // we need to merge them |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
959 // each slab yields ONE polygon! |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
960 |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
961 // we need to sorted all the rectangles that originate from the same Z |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
962 // into lanes. To make sure they are grouped together in the array, we |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
963 // sort it. |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
964 std::sort(projected.begin(), projected.end(), CompareRectanglesForProjection); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
965 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
966 std::vector<RtStructRectanglesInSlab> rectanglesForEachSlab; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
967 rectanglesForEachSlab.reserve(projected.size()); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
968 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
969 double curZ = 0; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
970 for (size_t i = 0; i < projected.size(); ++i) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
971 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
972 #if 0 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
973 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab()); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
974 #else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
975 if (i == 0) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
976 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
977 curZ = projected[i].second; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
978 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab()); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
979 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
980 else |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
981 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
982 // this check is needed to prevent creating a new slab if |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
983 // the new polygon is at the same Z coord than last one |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
984 if (!LinearAlgebra::IsNear(curZ, projected[i].second)) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
985 { |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
986 rectanglesForEachSlab.push_back(RtStructRectanglesInSlab()); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
987 curZ = projected[i].second; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
988 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
989 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
990 #endif |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
991 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
992 rectanglesForEachSlab.back().push_back(projected[i].first); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
993 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
994 // as long as they have the same y, we should put them into the same lane |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
995 // BUT in Sebastien's code, there is only one polygon per lane. |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
996 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
997 //std::cout << "rect: xmin = " << rect.xmin << " xmax = " << rect.xmax << " ymin = " << rect.ymin << " ymax = " << rect.ymax << std::endl; |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
998 } |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
999 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1000 // now we need to sort the slabs in increasing Y order (see ConvertListOfSlabsToSegments) |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1001 std::sort(rectanglesForEachSlab.begin(), rectanglesForEachSlab.end(), CompareSlabsY); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1002 |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1003 ConvertListOfSlabsToSegments(segments, rectanglesForEachSlab, projected.size()); |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1004 #else |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1005 BoostMultiPolygon merged; |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1006 Union(merged, projected); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1007 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1008 polygons.resize(merged.size()); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1009 for (size_t i = 0; i < merged.size(); i++) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1010 { |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1011 const std::vector<BoostPoint>& outer = merged[i].outer(); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1012 |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1013 polygons[i].resize(outer.size()); |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1014 for (size_t j = 0; j < outer.size(); j++) |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1015 { |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1016 polygons[i][j] = Point2D(outer[j].x(), outer[j].y()); |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1017 } |
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1018 } |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1019 #endif |
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1020 |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1021 #else |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1022 for (Polygons::iterator polygon = structure.polygons_.begin(); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1023 polygon != structure.polygons_.end(); ++polygon) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1024 { |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1025 double x1, y1, x2, y2; |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1026 if (polygon->Project(x1, y1, x2, y2, slice)) |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1027 { |
1000
50e5acf5553b
changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents:
994
diff
changeset
|
1028 std::vector<Point2D> p(4); |
132
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1029 p[0] = std::make_pair(x1, y1); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1030 p[1] = std::make_pair(x2, y1); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1031 p[2] = std::make_pair(x2, y2); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1032 p[3] = std::make_pair(x1, y2); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1033 polygons.push_back(p); |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1034 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1035 } |
35c2b85836ce
fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
131
diff
changeset
|
1036 #endif |
125 | 1037 |
126
c9e88e7935a4
rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
125
diff
changeset
|
1038 return true; |
125 | 1039 } |
1040 else | |
1041 { | |
1042 return false; | |
1043 } | |
0 | 1044 } |
1178
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1045 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1046 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1047 void DicomStructureSet::ProjectOntoLayer(PolylineSceneLayer& layer, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1048 const CoordinateSystem3D& plane, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1049 size_t structureIndex, |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1050 const Color& color) const |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1051 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1052 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1053 std::vector< std::vector<Point2D> > polygons; |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1054 if (ProjectStructure(polygons, structureIndex, plane)) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1055 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1056 for (size_t j = 0; j < polygons.size(); j++) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1057 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1058 std::vector<ScenePoint2D> chain; |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1059 chain.reserve(polygons[j].size()); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1060 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1061 for (size_t k = 0; k < polygons[j].size(); k++) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1062 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1063 chain.push_back(ScenePoint2D(polygons[j][k].x, polygons[j][k].y)); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1064 } |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1065 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1066 layer.AddChain(chain, true, color.GetRed(), color.GetGreen(), color.GetBlue()); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1067 } |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1068 } |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1069 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1070 #else |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1071 std::vector< std::pair<Point2D, Point2D> > segments; |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1072 |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1073 if (ProjectStructure(segments, structureIndex, plane)) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1074 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1075 for (size_t j = 0; j < segments.size(); j++) |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1076 { |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1077 std::vector<ScenePoint2D> chain(2); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1078 chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1079 chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1080 layer.AddChain(chain, false, color.GetRed(), color.GetGreen(), color.GetBlue()); |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1081 } |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1082 } |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1083 #endif |
3c7cdbf32e2a
DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1170
diff
changeset
|
1084 } |
0 | 1085 } |