Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Toolbox/ParsedDicomDataset.cpp @ 1834:126522623e20

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 10 Jun 2021 12:07:04 +0200
parents 9ac2a65d4172
children 3889ae96d2e9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
1739
9ac2a65d4172 upgrade to year 2021
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
8 * modify it under the terms of the GNU Lesser General Public License
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
15 * Lesser General Public License for more details.
1596
4fb8fdf03314 removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
16 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
17 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
18 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
19 * <http://www.gnu.org/licenses/>.
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #include "ParsedDicomDataset.h"
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include <dcmtk/dcmdata/dcfilefo.h>
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 namespace OrthancStone
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 static DcmItem* LookupPath(Orthanc::ParsedDicomFile& dicom,
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
30 const Orthanc::DicomPath& path)
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 DcmItem* node = dicom.GetDcmtkObject().getDataset();
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 for (size_t i = 0; i < path.GetPrefixLength(); i++)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 {
1504
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
36 const Orthanc::DicomTag& tmp = path.GetPrefixTag(i);
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 DcmTagKey tag(tmp.GetGroup(), tmp.GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 DcmSequenceOfItems* sequence = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 if (!node->findAndGetSequence(tag, sequence).good() ||
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 sequence == NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 unsigned long pos = path.GetPrefixIndex(i);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 if (pos >= sequence->card())
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 node = sequence->getItem(pos);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 if (node == NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 return node;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 bool ParsedDicomDataset::GetStringValue(std::string& result,
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
64 const Orthanc::DicomPath& path) const
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 DcmItem* node = LookupPath(dicom_, path);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 if (node != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 DcmTagKey tag(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 const char* s = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 if (node->findAndGetString(tag, s).good() &&
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 s != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 result.assign(s);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 return true;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 return false;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 bool ParsedDicomDataset::GetSequenceSize(size_t& size,
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
86 const Orthanc::DicomPath& path) const
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 DcmItem* node = LookupPath(dicom_, path);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 if (node != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 DcmTagKey tag(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 DcmSequenceOfItems* s = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 if (node->findAndGetSequence(tag, s).good() &&
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 s != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 size = s->card();
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 return true;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 return false;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 }