annotate Framework/Toolbox/ParsedDicomDataset.cpp @ 1180:9c8f557ea799 broker

ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 20 Nov 2019 17:34:17 +0100
parents
children 0ca50d275b9a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "ParsedDicomDataset.h"
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include <dcmtk/dcmdata/dcfilefo.h>
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 namespace OrthancStone
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 static DcmItem* LookupPath(Orthanc::ParsedDicomFile& dicom,
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 const OrthancPlugins::DicomPath& path)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 DcmItem* node = dicom.GetDcmtkObject().getDataset();
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 for (size_t i = 0; i < path.GetPrefixLength(); i++)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 const OrthancPlugins::DicomTag& tmp = path.GetPrefixTag(i);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 DcmTagKey tag(tmp.GetGroup(), tmp.GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 DcmSequenceOfItems* sequence = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 if (!node->findAndGetSequence(tag, sequence).good() ||
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 sequence == NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 unsigned long pos = path.GetPrefixIndex(i);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 if (pos >= sequence->card())
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 node = sequence->getItem(pos);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 if (node == NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 return NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 return node;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 bool ParsedDicomDataset::GetStringValue(std::string& result,
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 const OrthancPlugins::DicomPath& path) const
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 DcmItem* node = LookupPath(dicom_, path);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 if (node != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 DcmTagKey tag(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 const char* s = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 if (node->findAndGetString(tag, s).good() &&
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 s != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 result.assign(s);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 return true;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 return false;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 bool ParsedDicomDataset::GetSequenceSize(size_t& size,
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 const OrthancPlugins::DicomPath& path) const
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 DcmItem* node = LookupPath(dicom_, path);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 if (node != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 DcmTagKey tag(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement());
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 DcmSequenceOfItems* s = NULL;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 if (node->findAndGetSequence(tag, s).good() &&
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 s != NULL)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 size = s->card();
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 return true;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 return false;
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 }