Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 35:ee3bc8f7df5b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 04 Apr 2024 20:37:08 +0200
parents bee2017f3088
children 13698d34e059
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
24
dd0cd39e6259 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * SPDX-License-Identifier: GPL-3.0-or-later
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 */
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 /**
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * STL plugin for Orthanc
24
dd0cd39e6259 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 *
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * This program is free software: you can redistribute it and/or
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * modify it under the terms of the GNU General Public License as
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * published by the Free Software Foundation, either version 3 of the
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * License, or (at your option) any later version.
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 *
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * This program is distributed in the hope that it will be useful, but
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * WITHOUT ANY WARRANTY; without even the implied warranty of
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * General Public License for more details.
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 *
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * You should have received a copy of the GNU General Public License
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 **/
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
35
ee3bc8f7df5b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
25 #include "StructureSetGeometry.h"
ee3bc8f7df5b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
26 #include "StructureSet.h"
34
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 33
diff changeset
27 #include "STLToolbox.h"
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
28 #include "StructurePolygon.h"
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
29 #include "VTKToolbox.h"
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
30 #include "Vector3D.h"
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
31 #include "Toolbox.h"
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
32 #include "Extent2D.h"
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
33
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
36 #include <EmbeddedResources.h>
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
37
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
38 #include <DicomFormat/DicomInstanceHasher.h>
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
39 #include <DicomParsing/FromDcmtkBridge.h>
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
40 #include <DicomParsing/ParsedDicomFile.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
41 #include <Images/ImageProcessing.h>
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 #include <Logging.h>
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
43 #include <OrthancFramework.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
44 #include <SerializationToolbox.h>
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 #include <SystemToolbox.h>
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
47 #include <vtkNew.h>
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
48
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 #include <boost/thread/shared_mutex.hpp>
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
51 #define ORTHANC_PLUGIN_NAME "stl"
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
52
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
53
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 // Forward declaration
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 void ReadStaticAsset(std::string& target,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 const std::string& path);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 /**
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 * As the Three.js static assets are gzipped by the
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 * "EmbedStaticAssets.py" script, we use a cache to maintain the
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 * uncompressed assets in order to avoid multiple gzip decodings.
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 **/
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 class ResourcesCache : public boost::noncopyable
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 private:
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 typedef std::map<std::string, std::string*> Content;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 boost::shared_mutex mutex_;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 Content content_;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 public:
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 ~ResourcesCache()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 assert(it->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 delete it->second;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 void Answer(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 const std::string& path)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 // Check whether the cache already contains the resource
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 boost::shared_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 Content::const_iterator found = content_.find(path);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 if (found != content_.end())
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 assert(found->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 return;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 // This resource has not been cached yet
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 std::unique_ptr<std::string> item(new std::string);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 ReadStaticAsset(*item, path);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 // Store the resource into the cache
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 boost::unique_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 if (content_.find(path) == content_.end())
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 content_[path] = item.release();
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 };
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 static ResourcesCache cache_;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 static bool hasCreateDicomStl_;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 void ServeFile(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 const char* url,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 const OrthancPluginHttpRequest* request)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 {
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
127 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
128 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
129 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
130 return;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
131 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
132
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 std::string file = request->groups[0];
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 if (file == "viewer.html")
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 std::string s;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_HTML);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 else if (file == "viewer.js")
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 std::string s;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_JS);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 else
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 cache_.Answer(output, file);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
154
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
155
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
156 #include <dcmtk/dcmdata/dcfilefo.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
157 #include <dcmtk/dcmdata/dcsequen.h>
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
158 #include <dcmtk/dcmdata/dcuid.h>
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
159
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
160
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
161 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
162 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
163 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
164 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
165
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
166 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
167 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
168 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
169 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
170 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
171
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
172 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
173 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
174 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
175 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
176 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
177
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
178 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
179 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
180 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
181 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
182 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
183
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
184 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
185
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
186 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
187 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
188 *p = (*p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
189 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
190 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
191 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
192 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
193
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
194
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
195 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
196 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
197 std::string dicom;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
198
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
199 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
200 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
201 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
202 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
203 else
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
204 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
205 return new Orthanc::ParsedDicomFile(dicom);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
206 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
207 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
208
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
209
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
210 static void GetReferencedVolumeAxes(Vector3D& axisX,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
211 Vector3D& axisY,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
212 const StructureSet& structureSet)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
213 {
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
214 // This is a rough guess for the X/Y axes
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
215 axisX = Vector3D(1, 0, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
216 axisY = Vector3D(0, 1, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
217
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
218 // Look for one instance from the referenced volume
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
219 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid();
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
220
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
221 Json::Value response;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
222 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false))
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
223 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
224 if (response.type() != Json::arrayValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
225 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
226 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
227 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
228
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
229 bool first = true;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
230
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
231 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
232 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
233 if (response[i].type() != Json::objectValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
234 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
235 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
236 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
237
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
238 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance")
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
239 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
240 if (first)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
241 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
242 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID");
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
243 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId));
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
244
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
245 std::string imageOrientation;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
246 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT))
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
247 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
248 std::vector<std::string> items;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
249 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\');
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
250
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
251 double x1, x2, x3, y1, y2, y3;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
252
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
253 if (items.size() == 6 &&
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
254 STLToolbox::MyParseDouble(x1, items[0]) &&
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
255 STLToolbox::MyParseDouble(x2, items[1]) &&
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
256 STLToolbox::MyParseDouble(x3, items[2]) &&
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
257 STLToolbox::MyParseDouble(y1, items[3]) &&
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
258 STLToolbox::MyParseDouble(y2, items[4]) &&
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
259 STLToolbox::MyParseDouble(y3, items[5]))
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
260 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
261 axisX = Vector3D(x1, x2, x3);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
262 axisY = Vector3D(y1, y2, y3);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
263 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
264 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
265 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
266 else
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
267 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
268 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
269 "Multiple instances with the same SOP Instance UID");
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
270 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
271 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
272 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
273 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
274 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
275
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
276
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
277 static bool EncodeStructureSetMesh(std::string& stl,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
278 const StructureSet& structureSet,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
279 const StructureSetGeometry& geometry,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
280 const std::set<std::string>& roiNames,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
281 unsigned int resolution,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
282 bool smooth)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
283 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
284 if (resolution < 1 ||
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
285 structureSet.GetPolygonsCount() < 1)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
286 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
287 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
288 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
289
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
290 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm()))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
291 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
292 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
293 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
294
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
295 Vector3D axisX, axisY;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
296 GetReferencedVolumeAxes(axisX, axisY, structureSet);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
297
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
298 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
299
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
300 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) ||
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
301 !STLToolbox::IsNear(1, axisY.ComputeNorm()) ||
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
302 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal()))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
303 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
304 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
305 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
306
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
307 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
308 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
309 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
310 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
311 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
312
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
313 const int depth = geometry.GetSlicesCount();
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
314
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
315 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
316 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
317 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
318
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
319 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
320 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
321
30
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
322 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution);
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
323 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution);
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
324 const double pixelSpacingZ = geometry.GetSlicesSpacing();
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
325
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
326 bool first = true;
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
327
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
328 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
329 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
330 const StructurePolygon& polygon = structureSet.GetPolygon(i);
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
331 if (roiNames.find(polygon.GetRoiName()) != roiNames.end())
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
332 {
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
333 // This polygon corresponds to a ROI of interest
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
334
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
335 size_t z;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
336 if (geometry.LookupSliceIndex(z, polygon))
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
337 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
338 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
339 points.reserve(polygon.GetPointsCount());
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
340
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
341 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
342 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
343 const Vector3D& point = polygon.GetPoint(j);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
344 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
345 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
346 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
347 static_cast<int32_t>(std::floor(y))));
30
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
348
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
349 if (first)
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
350 {
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
351 first = false;
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
352 volume->SetOrigin(point.GetX() - x * pixelSpacingX,
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
353 point.GetY() - y * pixelSpacingY,
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
354 point.GetZ() - z * pixelSpacingZ);
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
355 }
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
356 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
357
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
358 Orthanc::ImageAccessor slice;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
359 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
360 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + z * resolution * resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
361
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
362 XorFiller filler(slice);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
363 Orthanc::ImageProcessing::FillPolygon(filler, points);
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
364 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
365 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
366 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
367
30
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
368 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
369
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
370 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
371 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
372
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
373
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
374 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
375 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
376 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
377 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
378 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
379 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
380 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
381 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
382 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
383
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
384 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
385
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
386 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
387
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
388 std::set<std::string> names;
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
389 StructureSet::ListStructuresNames(names, *dicom);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
390
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
391 Json::Value answer = Json::arrayValue;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
392
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
393 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
394 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
395 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
396 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
397
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
398 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
399 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
400 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
401
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
402
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
403 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
404 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
405 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
406 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
407 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
408 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
409 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
410 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
411 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
412
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
413
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
414 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
415 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
416 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
417 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
418 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
419 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
420
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
421
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
422 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
423 const std::string& stl,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
424 const Json::Value& body,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
425 const std::string& parentStudy,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
426 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
427 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
428 const std::string& defaultTitle)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
429 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
430 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
431
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
432 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
433
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
434 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
435 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
436 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
437
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
438 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
439 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
440 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
441 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
442
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
443 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
444 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
445 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
446 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
447 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
448 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
449 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
450
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
451 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
452 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
453 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
454 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
455
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
456 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
457 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
458 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
459
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
460 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
461 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
462 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
463 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
464 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
465 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
466 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
467 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
468
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
469 std::string date, time;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
470 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
471 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
472
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
473 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
474 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
475
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
476 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
477 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
478 Json::Value item;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
479 item["CodeValue"] = "mm";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
480 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
481 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
482
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
483 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
484 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
485
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
486 std::string content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
487 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
488
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
489 Json::Value create;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
490 create["Content"] = content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
491 create["Parent"] = parentStudy;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
492 create["Tags"] = normalized;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
493
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
494 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
495 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
496 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
497 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
498 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
499
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
500
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
501 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
502 const char* url,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
503 const OrthancPluginHttpRequest* request)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
504 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
505 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
506 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
507 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
508 static const char* const KEY_SMOOTH = "Smooth";
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
509 static const char* const KEY_STRICT = "Strict";
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
510
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
511 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
512 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
513 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
514 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
515 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
516
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
517 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
518 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
519 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
520 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
521 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
522
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
523 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
524 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
525 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
526 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
527 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
528 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
529 256 /* default value */);
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
530 const bool strict = (body.isMember(KEY_STRICT) ?
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
531 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) :
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
532 true /* strict by default */);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
533
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
534 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
535 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
536
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
537 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
538
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
539 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
540
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
541 StructureSetGeometry geometry(structureSet, strict);
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
542
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
543 std::string stl;
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
544 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
545 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
546 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
547 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
548 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
549 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
550 std::string seriesDescription;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
551
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
552 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
553 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
554 seriesDescription += ": ";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
555 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
556 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
557 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
558 seriesDescription.clear();
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
559 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
560
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
561 bool first = true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
562 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
563 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
564 if (first)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
565 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
566 first = false;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
567 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
568 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
569 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
570 seriesDescription += ", ";
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
571 }
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
572
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
573 seriesDescription += *it;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
574 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
575
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
576 std::string frameOfReferenceUid;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
577 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
578 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
579 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
580 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
581 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
582 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
583 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
584 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
585
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
586 Json::Value answer;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
587 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
588 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
589
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
590 std::string s = answer.toStyledString();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
591 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
592 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
593 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
594
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
595
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
596 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
597 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
598 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
599 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
600 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
601 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
602 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
603 return;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
604 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
605
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
606 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
607
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
608 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
609 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
610
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
611 std::string stl;
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
612 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL ||
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
613 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage ||
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
614 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
615 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
616 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
617 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
618 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
619 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
620 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
621 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
622 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
623 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
624
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
625
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
626
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
627 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
628 const char* url,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
629 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
630 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
631 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
632 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
633 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
634 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
635
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
636 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
637 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
638 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
639 return;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
640 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
641
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
642 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
643 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
644 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
645 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
646 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
647
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
648 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
649 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
650 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
651 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
652 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
653
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
654 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
655 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
656 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
657 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
658 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
659 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
660 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
661
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
662 vtkNew<vtkImageData> volume;
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
663 VTKToolbox::LoadNifti(volume.Get(), nifti);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
664
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
665 std::string stl;
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
666 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth))
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
667 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
668 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
669 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
670 else
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
671 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
672 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
673
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
674 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
675
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
676 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
677 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
678
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
679 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
680 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
681 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
682 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
683
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
684
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
685 extern "C"
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
686 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
687 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
688 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
689 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
690
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
691 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
692 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
693 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
695 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
697 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
698 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701 return -1;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
706 #else
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
707 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
708 #endif
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
710 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
711
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
712 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
713
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
714 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
715 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
716 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
717 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
718 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
719
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
720 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
721
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
722 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
723 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
724 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
725
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
726 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
727 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
728 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
729 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
730 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
731
31
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
732 OrthancPlugins::OrthancConfiguration globalConfiguration;
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
733 OrthancPlugins::OrthancConfiguration configuration;
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
734 globalConfiguration.GetSection(configuration, "STL");
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
735
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
736 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
737 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
738
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
739 {
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
740 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
741
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
742 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
743 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
31
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
744 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("NIfTI", false) ? "true" : "false");
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
745 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
746
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
747 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
748 }
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
749
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
750 return 0;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
751 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
752
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
753
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
754 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
755 {
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
756 Orthanc::FinalizeFramework();
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
757 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
759
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
760 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
761 {
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
762 return ORTHANC_PLUGIN_NAME;
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
763 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
767 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
768 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
769 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770 }