orthanc-stl: Sources/Plugin.cpp annotate

annotate Sources/Plugin.cpp @ 36:13698d34e059

preparing to include O3DV

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Fri, 05 Apr 2024 07:42:06 +0200
parents	ee3bc8f7df5b
children	970994058acd

rev	line source
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * SPDX-License-Identifier: GPL-3.0-or-later
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	5
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * STL plugin for Orthanc
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	10 * This program is free software: you can redistribute it and/or
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 * modify it under the terms of the GNU General Public License as
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * published by the Free Software Foundation, either version 3 of the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * License, or (at your option) any later version.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	15 * This program is distributed in the hope that it will be useful, but
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 * WITHOUT ANY WARRANTY; without even the implied warranty of
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * General Public License for more details.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 * You should have received a copy of the GNU General Public License
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24
35 ee3bc8f7df5b reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	25 #include "StructureSetGeometry.h"
ee3bc8f7df5b reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	26 #include "StructureSet.h"
34 bee2017f3088 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 33 diff changeset	27 #include "STLToolbox.h"
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	28 #include "StructurePolygon.h"
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	29 #include "VTKToolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	30 #include "Vector3D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	31 #include "Toolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	32 #include "Extent2D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	33
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	34 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	35
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	36 #include <EmbeddedResources.h>
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	37
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	38 #include <DicomFormat/DicomInstanceHasher.h>
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	39 #include <DicomParsing/FromDcmtkBridge.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	40 #include <DicomParsing/ParsedDicomFile.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	41 #include <Images/ImageProcessing.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	42 #include <Logging.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	43 #include <OrthancFramework.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	44 #include <SerializationToolbox.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	45 #include <SystemToolbox.h>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	46
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	47 #include <vtkNew.h>
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	48
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	49 #include <boost/algorithm/string.hpp>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	50 #include <boost/thread/shared_mutex.hpp>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	51
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	52 #define ORTHANC_PLUGIN_NAME "stl"
5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	53
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	54
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	55 // Forward declaration
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	56 void ReadStaticAsset(std::string& target,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	57 const std::string& path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	58
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	59
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	60 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	61 * As the Three.js static assets are gzipped by the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	62 * "EmbedStaticAssets.py" script, we use a cache to maintain the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	63 * uncompressed assets in order to avoid multiple gzip decodings.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	64 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	65 class ResourcesCache : public boost::noncopyable
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	66 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	67 private:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	68 typedef std::map<std::string, std::string*> Content;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	69
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	70 boost::shared_mutex mutex_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	71 Content content_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	72
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	73 public:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	74 ~ResourcesCache()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	75 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	76 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	77 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78 assert(it->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	79 delete it->second;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	80 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	81 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	82
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	83 void Answer(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	84 const std::string& path)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	85 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	86 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 // Check whether the cache already contains the resource
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	90 boost::shared_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	91
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	92 Content::const_iterator found = content_.find(path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	93
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	94 if (found != content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	95 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	96 assert(found->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	97 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	98 return;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	99 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	100 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	101
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102 // This resource has not been cached yet
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104 std::unique_ptr<std::string> item(new std::string);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105 ReadStaticAsset(*item, path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 // Store the resource into the cache
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 boost::unique_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112 if (content_.find(path) == content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114 content_[path] = item.release();
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 };
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	121 static ResourcesCache cache_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	122 static bool hasCreateDicomStl_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	123
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	124 void ServeFile(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	125 const char* url,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	126 const OrthancPluginHttpRequest* request)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	127 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	128 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	129 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	130 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	131 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	132 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	133
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 std::string file = request->groups[0];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	135
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	136 if (file == "three.html")
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	137 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	138 std::string s;
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	139 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::THREE_HTML);
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	140 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	141 }
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	142 else if (file == "three.js")
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	143 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	144 std::string s;
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	145 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::THREE_JS);
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	146 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	147 }
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	148 else if (boost::starts_with(file, "libs/"))
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	149 {
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	150 cache_.Answer(output, file.substr(5));
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	151 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	152 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	153
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	154
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	155
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	156
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	157 #include <dcmtk/dcmdata/dcfilefo.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	158 #include <dcmtk/dcmdata/dcsequen.h>
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	159 #include <dcmtk/dcmdata/dcuid.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	160
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	161
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	162 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	163 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	164 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	165 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	166
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	167 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	168 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	169 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	170 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	171 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	172
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	173 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	174 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	175 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	176 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	177 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	178
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	179 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	180 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	181 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	182 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	183 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	184
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	185 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	186
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	187 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	188 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	189 p = (p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	190 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	191 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	192 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	193 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	194
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	195
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	196 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	197 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	198 std::string dicom;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	199
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	200 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	201 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	202 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	203 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	204 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	205 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	206 return new Orthanc::ParsedDicomFile(dicom);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	207 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	208 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	209
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	210
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	211 static void GetReferencedVolumeAxes(Vector3D& axisX,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	212 Vector3D& axisY,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	213 const StructureSet& structureSet)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	214 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	215 // This is a rough guess for the X/Y axes
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	216 axisX = Vector3D(1, 0, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	217 axisY = Vector3D(0, 1, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	218
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	219 // Look for one instance from the referenced volume
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	220 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid();
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	221
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	222 Json::Value response;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	223 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	224 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	225 if (response.type() != Json::arrayValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	226 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	227 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	228 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	229
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	230 bool first = true;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	231
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	232 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	233 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	234 if (response[i].type() != Json::objectValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	235 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	236 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	237 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	238
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	239 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance")
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	240 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	241 if (first)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	242 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	243 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	244 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId));
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	245
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	246 std::string imageOrientation;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	247 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	248 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	249 std::vector<std::string> items;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	250 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\');
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	251
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	252 double x1, x2, x3, y1, y2, y3;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	253
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	254 if (items.size() == 6 &&
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	255 STLToolbox::MyParseDouble(x1, items[0]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	256 STLToolbox::MyParseDouble(x2, items[1]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	257 STLToolbox::MyParseDouble(x3, items[2]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	258 STLToolbox::MyParseDouble(y1, items[3]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	259 STLToolbox::MyParseDouble(y2, items[4]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	260 STLToolbox::MyParseDouble(y3, items[5]))
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	261 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	262 axisX = Vector3D(x1, x2, x3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	263 axisY = Vector3D(y1, y2, y3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	264 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	265 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	266 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	267 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	268 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	269 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	270 "Multiple instances with the same SOP Instance UID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	271 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	272 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	273 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	274 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	275 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	276
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	277
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	278 static bool EncodeStructureSetMesh(std::string& stl,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	279 const StructureSet& structureSet,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	280 const StructureSetGeometry& geometry,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	281 const std::set<std::string>& roiNames,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	282 unsigned int resolution,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	283 bool smooth)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	284 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	285 if (resolution < 1 \|\|
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	286 structureSet.GetPolygonsCount() < 1)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	287 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	288 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	289 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	290
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	291 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	292 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	293 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	294 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	295
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	296 Vector3D axisX, axisY;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	297 GetReferencedVolumeAxes(axisX, axisY, structureSet);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	298
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	299 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	300
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	301 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) \|\|
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	302 !STLToolbox::IsNear(1, axisY.ComputeNorm()) \|\|
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	303 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	304 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	305 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	306 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	307
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	308 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	309 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	310 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	311 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	312 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	313
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	314 const int depth = geometry.GetSlicesCount();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	315
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	316 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	317 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	318 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	319
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	320 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	321 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	322
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	323 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	324 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	325 const double pixelSpacingZ = geometry.GetSlicesSpacing();
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	326
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	327 bool first = true;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	328
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	329 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	330 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	331 const StructurePolygon& polygon = structureSet.GetPolygon(i);
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	332 if (roiNames.find(polygon.GetRoiName()) != roiNames.end())
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	333 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	334 // This polygon corresponds to a ROI of interest
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	335
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	336 size_t z;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	337 if (geometry.LookupSliceIndex(z, polygon))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	338 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	339 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	340 points.reserve(polygon.GetPointsCount());
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	341
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	342 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	343 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	344 const Vector3D& point = polygon.GetPoint(j);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	345 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	346 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	347 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	348 static_cast<int32_t>(std::floor(y))));
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	349
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	350 if (first)
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	351 {
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	352 first = false;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	353 volume->SetOrigin(point.GetX() - x * pixelSpacingX,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	354 point.GetY() - y * pixelSpacingY,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	355 point.GetZ() - z * pixelSpacingZ);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	356 }
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	357 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	358
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	359 Orthanc::ImageAccessor slice;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	360 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	361 reinterpret_cast<uint8_t>(volume->GetScalarPointer()) + z resolution * resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	362
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	363 XorFiller filler(slice);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	364 Orthanc::ImageProcessing::FillPolygon(filler, points);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	365 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	366 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	367 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	368
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	369 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	370
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	371 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	372 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	373
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	374
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	375 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	376 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	377 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	378 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	379 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	380 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	381 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	382 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	383 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	384
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	385 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	386
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	387 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	388
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	389 std::set<std::string> names;
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	390 StructureSet::ListStructuresNames(names, *dicom);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	391
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	392 Json::Value answer = Json::arrayValue;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	393
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	394 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	395 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	396 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	397 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	398
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	399 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	400 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	401 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	402
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	403
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	404 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	405 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	406 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	407 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	408 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	409 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	410 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	411 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	412 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	413
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	414
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	415 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	416 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	417 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	418 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	419 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	420 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	421
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	422
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	423 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	424 const std::string& stl,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	425 const Json::Value& body,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	426 const std::string& parentStudy,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	427 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	428 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	429 const std::string& defaultTitle)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	430 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	431 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	432
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	433 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	434
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	435 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	436 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	437 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	438
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	439 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	440 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	441 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	442 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	443
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	444 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	445 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	446 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	447 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	448 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	449 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	450 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	451
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	452 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	453 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	454 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	455 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	456
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	457 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	458 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	459 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	460
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	461 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	462 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	463 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	464 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	465 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	466 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	467 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	468 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	469
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	470 std::string date, time;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	471 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	472 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	473
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	474 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	475 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	476
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	477 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	478 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	479 Json::Value item;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	480 item["CodeValue"] = "mm";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	481 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	482 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	483
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	484 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	485 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	486
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	487 std::string content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	488 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	489
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	490 Json::Value create;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	491 create["Content"] = content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	492 create["Parent"] = parentStudy;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	493 create["Tags"] = normalized;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	494
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	495 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	496 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	497 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	498 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	499 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	500
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	501
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	502 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	503 const char* url,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	504 const OrthancPluginHttpRequest* request)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	505 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	506 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	507 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	508 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	509 static const char* const KEY_SMOOTH = "Smooth";
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	510 static const char* const KEY_STRICT = "Strict";
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	511
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	512 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	513 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	514 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	515 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	516 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	517
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	518 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	519 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	520 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	521 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	522 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	523
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	524 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	525 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	526 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	527 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	528 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	529 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	530 256 /* default value */);
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	531 const bool strict = (body.isMember(KEY_STRICT) ?
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	532 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) :
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	533 true /* strict by default */);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	534
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	535 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	536 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	537
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	538 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	539
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	540 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	541
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	542 StructureSetGeometry geometry(structureSet, strict);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	543
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	544 std::string stl;
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	545 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	546 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	547 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	548 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	549 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	550 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	551 std::string seriesDescription;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	552
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	553 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	554 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	555 seriesDescription += ": ";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	556 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	557 else
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	558 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	559 seriesDescription.clear();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	560 }
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	561
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	562 bool first = true;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	563 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	564 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	565 if (first)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	566 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	567 first = false;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	568 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	569 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	570 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	571 seriesDescription += ", ";
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	572 }
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	573
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	574 seriesDescription += *it;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	575 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	576
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	577 std::string frameOfReferenceUid;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	578 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	579 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	580 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	581 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	582 else
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	583 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	584 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	585 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	586
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	587 Json::Value answer;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	588 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	589 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	590
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	591 std::string s = answer.toStyledString();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	592 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	593 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	594 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	595
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	596
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	597 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	598 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	599 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	600 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	601 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	602 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	603 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	604 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	605 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	606
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	607 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	608
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	609 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	610 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	611
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	612 std::string stl;
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	613 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL \|\|
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	614 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage \|\|
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	615 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	616 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	617 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	618 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	619 else
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	620 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	621 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	622 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	623 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	624 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	625
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	626
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	627
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	628 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	629 const char* url,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	630 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	631 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	632 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	633 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	634 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	635 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	636
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	637 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	638 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	639 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	640 return;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	641 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	642
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	643 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	644 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	645 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	646 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	647 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	648
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	649 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	650 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	651 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	652 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	653 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	654
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	655 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	656 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	657 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	658 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	659 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	660 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	661 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	662
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	663 vtkNew<vtkImageData> volume;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	664 VTKToolbox::LoadNifti(volume.Get(), nifti);
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	665
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	666 std::string stl;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	667 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth))
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	668 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	669 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	670 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	671 else
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	672 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	673 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	674
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	675 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	676
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	677 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	678 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	679
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	680 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	681 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	682 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	683 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	684
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	685
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	686 extern "C"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	687 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	688 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	689 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	690 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	691
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	692 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	693 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	694 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	695 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	696 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	697 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	698 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	699 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	700 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	701 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	702 return -1;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	703 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	704
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	705 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	706 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	707 #else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	708 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	709 #endif
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	710
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	711 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	712
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	713 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	714
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	715 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	716 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	717 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	718 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	719 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	720
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	721 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	722
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	723 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	724 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	725 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	726
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	727 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	728 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	729 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	730 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	731 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	732
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	733 OrthancPlugins::OrthancConfiguration globalConfiguration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	734 OrthancPlugins::OrthancConfiguration configuration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	735 globalConfiguration.GetSection(configuration, "STL");
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	736
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	737 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	738 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	739
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	740 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	741 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	742
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	743 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	744 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	745 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("NIfTI", false) ? "true" : "false");
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	746 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	747
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	748 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	749 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	750
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	751 return 0;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	752 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	753
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	754
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	755 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	756 {
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	757 Orthanc::FinalizeFramework();
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	758 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	759
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	760
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	761 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	762 {
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	763 return ORTHANC_PLUGIN_NAME;
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	764 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	765
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	766
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	767 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	768 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	769 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	770 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	771 }

Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 36:13698d34e059