Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 5811:a451777236fb attach-custom-data tip
advanced storage: fix + customizable path
author | Alain Mazy <am@orthanc.team> |
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date | Tue, 24 Sep 2024 17:52:45 +0200 |
parents | 023a99146dd0 |
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rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
224 | 8 * |
9 * This program is free software: you can redistribute it and/or | |
10 * modify it under the terms of the GNU General Public License as | |
11 * published by the Free Software Foundation, either version 3 of the | |
12 * License, or (at your option) any later version. | |
13 * | |
14 * This program is distributed in the hope that it will be useful, but | |
15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
17 * General Public License for more details. | |
18 * | |
19 * You should have received a copy of the GNU General Public License | |
20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 **/ | |
22 | |
23 | |
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24 #include "PrecompiledHeadersServer.h" |
224 | 25 #include "ServerContext.h" |
26 | |
4045 | 27 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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28 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 29 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 30 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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31 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 32 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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33 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 34 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
35 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
36 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
37 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
38 #include "../../OrthancFramework/Sources/Logging.h" | |
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39 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h" |
4045 | 40 #include "../../OrthancFramework/Sources/MetricsRegistry.h" |
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41 #include "../Plugins/Engine/OrthancPlugins.h" |
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42 |
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43 #include "OrthancConfiguration.h" |
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44 #include "OrthancRestApi/OrthancRestApi.h" |
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45 #include "ResourceFinder.h" |
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46 #include "Search/DatabaseLookup.h" |
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47 #include "ServerJobs/OrthancJobUnserializer.h" |
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48 #include "ServerToolbox.h" |
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49 #include "StorageCommitmentReports.h" |
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50 |
794 | 51 #include <dcmtk/dcmdata/dcfilefo.h> |
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52 #include <dcmtk/dcmnet/dimse.h> |
5160 | 53 |
54 #if HAVE_MALLOC_TRIM == 1 | |
55 # include <malloc.h> | |
56 #endif | |
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57 |
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58 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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59 |
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60 |
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61 /** |
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62 * IMPORTANT: We make the assumption that the same instance of |
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63 * FileStorage can be accessed from multiple threads. This seems OK |
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64 * since the filesystem implements the required locking mechanisms, |
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65 * but maybe a read-writer lock on the "FileStorage" could be |
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66 * useful. Conversely, "ServerIndex" already implements mutex-based |
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67 * locking. |
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68 **/ |
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69 |
224 | 70 namespace Orthanc |
71 { | |
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72 static void ComputeStudyTags(ExpandedResource& resource, |
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73 ServerContext& context, |
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74 const std::string& studyPublicId, |
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75 const std::set<DicomTag>& requestedTags); |
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76 |
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77 |
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78 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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79 { |
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80 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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81 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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82 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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83 } |
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84 |
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85 |
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86 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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87 { |
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88 return ( |
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89 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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90 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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91 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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93 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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94 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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95 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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96 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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97 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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98 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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99 |
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100 // Do not try to transcode special transfer syntaxes |
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101 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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102 transferSyntax != DicomTransferSyntax_XML); |
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103 } |
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104 |
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105 |
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106 ServerContext::StoreResult::StoreResult() : |
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107 status_(StoreStatus_Failure), |
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108 cstoreStatusCode_(0) |
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109 { |
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110 } |
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111 |
5182 | 112 |
113 #if HAVE_MALLOC_TRIM == 1 | |
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114 void ServerContext::MemoryTrimmingThread(ServerContext* that, |
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115 unsigned int intervalInSeconds) |
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116 { |
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117 Logging::SetCurrentThreadName("MEMORY-TRIM"); |
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118 |
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119 boost::posix_time::ptime lastExecution = boost::posix_time::second_clock::universal_time(); |
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120 |
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121 // This thread is started only if malloc_trim is defined |
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122 while (!that->done_) |
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123 { |
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124 boost::posix_time::ptime now = boost::posix_time::second_clock::universal_time(); |
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125 boost::posix_time::time_duration elapsed = now - lastExecution; |
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126 |
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127 if (elapsed.total_seconds() > intervalInSeconds) |
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128 { |
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129 // If possible, gives memory back to the system |
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130 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt) |
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131 { |
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132 MetricsRegistry::Timer timer(that->GetMetricsRegistry(), "orthanc_memory_trimming_duration_ms"); |
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133 malloc_trim(128*1024); |
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134 } |
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135 lastExecution = boost::posix_time::second_clock::universal_time(); |
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136 } |
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137 |
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138 boost::this_thread::sleep(boost::posix_time::milliseconds(100)); |
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139 } |
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140 } |
5182 | 141 #endif |
142 | |
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143 |
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144 void ServerContext::ChangeThread(ServerContext* that, |
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145 unsigned int sleepDelay) |
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146 { |
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147 Logging::SetCurrentThreadName("CHANGES"); |
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148 |
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149 while (!that->done_) |
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150 { |
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151 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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152 |
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153 if (obj.get() != NULL) |
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154 { |
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155 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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156 |
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157 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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158 for (ServerListeners::iterator it = that->listeners_.begin(); |
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159 it != that->listeners_.end(); ++it) |
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160 { |
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161 try |
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162 { |
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163 try |
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164 { |
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165 it->GetListener().SignalChange(change); |
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166 } |
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167 catch (std::bad_alloc&) |
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168 { |
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169 LOG(ERROR) << "Not enough memory while signaling a change"; |
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170 } |
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171 catch (...) |
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172 { |
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173 throw OrthancException(ErrorCode_InternalError, "Error while signaling a change"); |
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174 } |
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175 } |
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176 catch (OrthancException& e) |
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177 { |
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178 LOG(ERROR) << "Error in the " << it->GetDescription() |
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179 << " callback while signaling a change: " << e.What() |
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180 << " (code " << e.GetErrorCode() << ")"; |
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181 } |
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182 } |
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183 } |
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184 } |
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185 } |
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186 |
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187 |
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188 void ServerContext::JobEventsThread(ServerContext* that, |
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189 unsigned int sleepDelay) |
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190 { |
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191 Logging::SetCurrentThreadName("JOB-EVENTS"); |
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192 |
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193 while (!that->done_) |
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194 { |
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195 std::unique_ptr<IDynamicObject> obj(that->pendingJobEvents_.Dequeue(sleepDelay)); |
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196 |
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197 if (obj.get() != NULL) |
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198 { |
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199 const JobEvent& event = dynamic_cast<const JobEvent&>(*obj.get()); |
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200 |
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201 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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202 for (ServerListeners::iterator it = that->listeners_.begin(); |
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203 it != that->listeners_.end(); ++it) |
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204 { |
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205 try |
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206 { |
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207 try |
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208 { |
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209 it->GetListener().SignalJobEvent(event); |
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210 } |
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211 catch (std::bad_alloc&) |
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212 { |
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213 LOG(ERROR) << "Not enough memory while signaling a job event"; |
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214 } |
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215 catch (...) |
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216 { |
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217 throw OrthancException(ErrorCode_InternalError, "Error while signaling a job event"); |
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218 } |
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219 } |
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220 catch (OrthancException& e) |
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221 { |
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222 LOG(ERROR) << "Error in the " << it->GetDescription() |
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223 << " callback while signaling a job event: " << e.What() |
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224 << " (code " << e.GetErrorCode() << ")"; |
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225 } |
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226 } |
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227 } |
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228 } |
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229 } |
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230 |
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231 |
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232 void ServerContext::SaveJobsThread(ServerContext* that, |
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233 unsigned int sleepDelay) |
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234 { |
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235 Logging::SetCurrentThreadName("SAVE-JOBS"); |
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236 |
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237 static const boost::posix_time::time_duration PERIODICITY = |
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238 boost::posix_time::seconds(10); |
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239 |
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240 boost::posix_time::ptime next = |
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241 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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242 |
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243 while (!that->done_) |
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244 { |
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245 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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246 |
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247 if (that->haveJobsChanged_ || |
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248 boost::posix_time::microsec_clock::universal_time() >= next) |
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249 { |
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250 that->haveJobsChanged_ = false; |
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251 that->SaveJobsEngine(); |
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252 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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253 } |
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254 } |
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255 } |
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256 |
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257 |
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258 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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259 { |
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260 haveJobsChanged_ = true; |
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261 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Submitted, jobId)); |
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262 } |
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263 |
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264 |
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265 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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266 { |
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267 haveJobsChanged_ = true; |
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268 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Success, jobId)); |
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269 } |
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270 |
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271 |
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272 void ServerContext::SignalJobFailure(const std::string& jobId) |
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273 { |
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274 haveJobsChanged_ = true; |
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275 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Failure, jobId)); |
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276 } |
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277 |
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278 |
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279 void ServerContext::SetupJobsEngine(bool unitTesting, |
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280 bool loadJobsFromDatabase) |
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281 { |
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282 if (loadJobsFromDatabase) |
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283 { |
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284 std::string serialized; |
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285 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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286 { |
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287 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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288 |
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289 try |
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290 { |
4205 | 291 OrthancJobUnserializer unserializer(*this); |
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292 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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293 } |
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294 catch (OrthancException& e) |
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295 { |
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296 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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297 } |
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298 catch (const std::string& s) |
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299 { |
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300 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: \"" << s << "\""; |
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301 } |
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302 catch (...) |
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303 { |
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304 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway"; |
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305 } |
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306 } |
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307 else |
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308 { |
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309 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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310 } |
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311 } |
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312 else |
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313 { |
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314 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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315 } |
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316 |
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317 jobsEngine_.GetRegistry().SetObserver(*this); |
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318 jobsEngine_.Start(); |
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319 isJobsEngineUnserialized_ = true; |
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320 |
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321 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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322 } |
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323 |
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324 |
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325 void ServerContext::SaveJobsEngine() |
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326 { |
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327 if (saveJobs_) |
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328 { |
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329 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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330 |
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331 try |
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332 { |
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333 Json::Value value; |
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334 jobsEngine_.GetRegistry().Serialize(value); |
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335 |
4392
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diff
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336 std::string serialized; |
4394
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337 Toolbox::WriteFastJson(serialized, value); |
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338 |
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339 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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340 } |
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341 catch (OrthancException& e) |
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342 { |
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343 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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344 } |
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345 } |
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346 } |
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347 |
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348 |
5431 | 349 void ServerContext::PublishCacheMetrics() |
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350 { |
5431 | 351 metricsRegistry_->SetFloatValue("orthanc_dicom_cache_size_mb", |
5337
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352 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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353 metricsRegistry_->SetIntegerValue("orthanc_dicom_cache_count", dicomCache_.GetNumberOfItems()); |
5431 | 354 |
355 metricsRegistry_->SetFloatValue("orthanc_storage_cache_size_mb", | |
356 static_cast<float>(storageCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); | |
357 metricsRegistry_->SetIntegerValue("orthanc_storage_cache_count", storageCache_.GetNumberOfItems()); | |
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358 } |
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359 |
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360 |
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361 ServerContext::ServerContext(IDatabaseWrapper& database, |
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362 IStorageArea& area, |
2950
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363 bool unitTesting, |
5785 | 364 size_t maxCompletedJobs, |
365 bool readOnly) : | |
366 index_(*this, database, (unitTesting ? 20 : 500), readOnly), | |
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367 area_(area), |
656 | 368 compressionEnabled_(false), |
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369 storeMD5_(true), |
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370 largeDicomThrottler_(1), |
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371 dicomCache_(DICOM_CACHE_SIZE), |
2738
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|
372 mainLua_(*this), |
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373 filterLua_(*this), |
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374 luaListener_(*this), |
2950
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375 jobsEngine_(maxCompletedJobs), |
2136
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376 #if ORTHANC_ENABLE_PLUGINS == 1 |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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377 plugins_(NULL), |
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378 #endif |
1436
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379 done_(false), |
2673
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JobsRegistry::IObserver
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380 haveJobsChanged_(false), |
3174
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primitives to collect metrics in Orthanc
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381 isJobsEngineUnserialized_(false), |
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382 metricsRegistry_(new MetricsRegistry), |
3535
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display a security warning in the logs at startup when ExecuteLuaEnabled is true
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383 isHttpServerSecure_(true), |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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384 isExecuteLuaEnabled_(false), |
5200
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New configuration option 'RestApiWriteToFileSystemEnabled'
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385 isRestApiWriteToFileSystemEnabled_(false), |
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386 overwriteInstances_(false), |
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387 dcmtkTranscoder_(new DcmtkTranscoder), |
4375
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388 isIngestTranscoding_(false), |
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389 ingestTranscodingOfUncompressed_(true), |
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390 ingestTranscodingOfCompressed_(true), |
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391 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
5785 | 392 readOnly_(readOnly), |
5111
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/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
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393 deidentifyLogs_(false), |
5785 | 394 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time()) |
224 | 395 { |
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396 try |
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397 { |
3939
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398 unsigned int lossyQuality; |
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399 |
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400 { |
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401 OrthancConfiguration::ReaderLock lock; |
2965
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MediaArchiveSize configuration option
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402 |
3939
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403 queryRetrieveArchive_.reset( |
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404 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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405 mediaArchive_.reset( |
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406 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
4143
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Add missing tag "Retrieve AE Title (0008,0054)" in C-FIND SCP responses
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407 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
3939
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408 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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409 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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410 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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411 |
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412 // New configuration options in Orthanc 1.5.1 |
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413 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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414 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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|
415 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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|
416 |
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417 // New configuration option in Orthanc 1.6.0 |
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418 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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419 |
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420 // New options in Orthanc 1.7.0 |
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421 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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|
422 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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|
423 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
3677
4182cde57afb
refactoring FindStorageAccessMode
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|
424 |
3939
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|
425 std::string s; |
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|
426 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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427 { |
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|
428 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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|
429 { |
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430 isIngestTranscoding_ = true; |
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431 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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|
432 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
4384
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new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
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|
433 |
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New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
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|
434 // New options in Orthanc 1.8.2 |
4384
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changeset
|
435 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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changeset
|
436 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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changeset
|
437 |
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changeset
|
438 LOG(WARNING) << " Ingest transcoding will " |
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|
439 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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|
440 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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|
441 |
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|
442 LOG(WARNING) << " Ingest transcoding will " |
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|
443 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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|
444 << " to compressed transfer syntaxes"; |
3939
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445 } |
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446 else |
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447 { |
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448 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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449 "Unknown transfer syntax for ingest transcoding: " + s); |
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450 } |
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451 } |
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452 else |
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diff
changeset
|
453 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
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454 isIngestTranscoding_ = false; |
3939
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455 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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|
456 } |
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New config option "DeidentifyDimseQueryLogs"
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|
457 |
4465
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|
458 // New options in Orthanc 1.8.2 |
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459 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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460 { |
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461 deidentifyLogs_ = true; |
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|
462 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
4375
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|
463 |
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|
464 DicomVersion version = StringToDicomVersion( |
5334
5b2a5cc64cb1
upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
465 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2023b")); |
4375
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|
466 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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467 << EnumerationToString(version); |
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|
468 |
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changeset
|
469 logsDeidentifierRules_.SetupAnonymization(version); |
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|
470 } |
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|
471 else |
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changeset
|
472 { |
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473 deidentifyLogs_ = false; |
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changeset
|
474 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
475 } |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
476 |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
477 // New options in Orthanc 1.9.0 |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
478 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
479 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
480 { |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
481 throw OrthancException(ErrorCode_ParameterOutOfRange, |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
482 "Unknown preferred transfer syntax: " + s); |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
483 } |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
484 |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
485 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
486 << GetTransferSyntaxUid(preferredTransferSyntax_); |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
487 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
488 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
489 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
490 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
491 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
492 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
493 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
494 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
495 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
496 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
5410
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
497 jobEventsThread_ = boost::thread(JobEventsThread, this, (unitTesting ? 20 : 100)); |
5182 | 498 |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
499 #if HAVE_MALLOC_TRIM == 1 |
5346
566e8d32bd3a
Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents:
5337
diff
changeset
|
500 LOG(INFO) << "Starting memory trimming thread at 30 seconds interval"; |
566e8d32bd3a
Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents:
5337
diff
changeset
|
501 memoryTrimmingThread_ = boost::thread(MemoryTrimmingThread, this, 30); |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
502 #else |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
503 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the memory trimming thread"; |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
504 #endif |
5182 | 505 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
506 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
507 } |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
508 catch (OrthancException&) |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
509 { |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
510 Stop(); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
511 throw; |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
512 } |
224 | 513 } |
514 | |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
515 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
516 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
517 ServerContext::~ServerContext() |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
518 { |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
519 if (!done_) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
520 { |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
521 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
522 Stop(); |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
523 } |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
524 } |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
525 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
526 |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
527 void ServerContext::Stop() |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
528 { |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
529 if (!done_) |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
530 { |
1459 | 531 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
532 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 533 listeners_.clear(); |
534 } | |
535 | |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
536 done_ = true; |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
537 |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
538 if (changeThread_.joinable()) |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
539 { |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
540 changeThread_.join(); |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
541 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
542 |
5410
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
543 if (jobEventsThread_.joinable()) |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
544 { |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
545 jobEventsThread_.join(); |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
546 } |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
547 |
2672
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
548 if (saveJobsThread_.joinable()) |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
549 { |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
550 saveJobsThread_.join(); |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
551 } |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
552 |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
553 if (memoryTrimmingThread_.joinable()) |
5181
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
554 { |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
555 memoryTrimmingThread_.join(); |
5181
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
556 } |
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
557 |
4024
1d2b31fc782f
new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents:
4022
diff
changeset
|
558 jobsEngine_.GetRegistry().ResetObserver(); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
559 |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
560 if (isJobsEngineUnserialized_) |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
561 { |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
562 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
563 SaveJobsEngine(); |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
564 } |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
565 |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
566 // Do not change the order below! |
2570
2e879c796ec7
JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2507
diff
changeset
|
567 jobsEngine_.Stop(); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
568 index_.Stop(); |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
569 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
570 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
571 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
572 |
236 | 573 void ServerContext::SetCompressionEnabled(bool enabled) |
574 { | |
575 if (enabled) | |
576 LOG(WARNING) << "Disk compression is enabled"; | |
577 else | |
578 LOG(WARNING) << "Disk compression is disabled"; | |
579 | |
580 compressionEnabled_ = enabled; | |
581 } | |
582 | |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
583 |
1126
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
584 void ServerContext::RemoveFile(const std::string& fileUuid, |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
585 FileContentType type, |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
586 const std::string& customData) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
587 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
588 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
589 accessor.Remove(fileUuid, type, customData); |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
590 } |
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
591 |
996
cf52f3bcb2b3
clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
995
diff
changeset
|
592 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
593 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
594 DicomInstanceToStore& dicom, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
595 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
596 bool isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
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597 { |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
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diff
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|
598 bool overwrite; |
023b2a9f3aa1
new enum: StoreInstanceMode
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diff
changeset
|
599 switch (mode) |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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600 { |
023b2a9f3aa1
new enum: StoreInstanceMode
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parents:
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diff
changeset
|
601 case StoreInstanceMode_Default: |
023b2a9f3aa1
new enum: StoreInstanceMode
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parents:
3813
diff
changeset
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602 overwrite = overwriteInstances_; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
603 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
604 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
605 case StoreInstanceMode_OverwriteDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
606 overwrite = true; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
607 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
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parents:
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diff
changeset
|
608 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
609 case StoreInstanceMode_IgnoreDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
610 overwrite = false; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
611 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
612 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
613 default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
614 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 615 } |
616 | |
617 bool hasPixelDataOffset; | |
618 uint64_t pixelDataOffset; | |
5316
03501a258d9e
added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5296
diff
changeset
|
619 ValueRepresentation pixelDataVR; |
4499 | 620 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( |
5316
03501a258d9e
added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5296
diff
changeset
|
621 pixelDataOffset, pixelDataVR, dicom.GetBufferData(), dicom.GetBufferSize()); |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
622 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
623 DicomTransferSyntax transferSyntax; |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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624 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
625 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
626 DicomMap summary; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
627 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
628 |
5176 | 629 std::set<DicomTag> allMainDicomTags; |
630 DicomMap::GetAllMainDicomTags(allMainDicomTags); | |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
631 |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
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632 try |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
633 { |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
634 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
635 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
636 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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parents:
4506
diff
changeset
|
637 DicomInstanceHasher hasher(summary); |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
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638 resultPublicId = hasher.HashInstance(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
639 |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
640 Json::Value dicomAsJson; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
641 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
642 |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
643 Json::Value simplifiedTags; |
4504
7d1eabfac6e0
removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4500
diff
changeset
|
644 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
645 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
646 // Test if the instance must be filtered out |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
647 StoreResult result; |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
648 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
649 if (!isReconstruct) // skip all filters if this is a reconstruction |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
650 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
651 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
652 |
c0bdc47165ef
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
653 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
654 { |
1453
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code to warn about possible threading problems
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parents:
1447
diff
changeset
|
655 try |
1433
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refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
656 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
657 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
658 { |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
659 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
660 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success' |
1453
c0bdc47165ef
code to warn about possible threading problems
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parents:
1447
diff
changeset
|
661 break; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
662 } |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
663 |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
664 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol) |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
665 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
666 uint16_t filterResult = STATUS_Success; |
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
667 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags)) |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
668 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
669 // The instance is to be discarded |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
670 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
671 result.SetCStoreStatusCode(filterResult); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
672 break; |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
673 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
674 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
675 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
676 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
677 catch (OrthancException& e) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
678 { |
c0bdc47165ef
code to warn about possible threading problems
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parents:
1447
diff
changeset
|
679 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
680 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
681 << " (code " << e.GetErrorCode() << ")"; |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
682 throw; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
683 } |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
684 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
685 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
686 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
687 if (result.GetStatus() == StoreStatus_FilteredOut) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
688 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
689 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
690 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
691 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
692 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
693 // Remove the file from the DicomCache (useful if |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
694 // "OverwriteInstances" is set to "true") |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
695 dicomCache_.Invalidate(resultPublicId); |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2815
diff
changeset
|
696 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
697 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
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1548
diff
changeset
|
698 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
699 |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
700 std::string dicomCustomData; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
701 std::string dicomUuid = Toolbox::GenerateUuid(); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
702 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
703 FileInfo dicomInfo = accessor.WriteInstance(dicomCustomData, dicom, dicom.GetBufferData(), dicom.GetBufferSize(), |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
704 FileContentType_Dicom, compression, storeMD5_, dicomUuid); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
705 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
706 ServerIndex::Attachments attachments; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
707 attachments.push_back(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
708 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
709 FileInfo dicomUntilPixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
710 if (hasPixelDataOffset && |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
711 (!area_.HasReadRange() || |
4519 | 712 compressionEnabled_)) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
713 { |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
714 std::string dicomHeaderCustomData; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
715 std::string dicomHeaderUuid = Toolbox::GenerateUuid(); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
716 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
717 dicomUntilPixelData = accessor.WriteInstance(dicomHeaderCustomData, dicom, dicom.GetBufferData(), pixelDataOffset, |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
718 FileContentType_DicomUntilPixelData, compression, storeMD5_, dicomHeaderUuid); |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
719 attachments.push_back(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
720 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
721 |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
722 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
723 InstanceMetadata instanceMetadata; |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
724 |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
725 try |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
726 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
727 result.SetStatus(index_.Store( |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
728 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
729 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, pixelDataVR, isReconstruct)); |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
730 } |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
731 catch (OrthancException& ex) |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
732 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
733 if (ex.GetErrorCode() == ErrorCode_DuplicateResource) |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
734 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
735 LOG(WARNING) << "Duplicate instance, deleting the attachments"; |
5529
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
736 } |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
737 else |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
738 { |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
739 LOG(ERROR) << "Unexpected error while storing an instance in DB, cancelling and deleting the attachments: " << ex.GetDetails(); |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
740 } |
5514 | 741 |
5529
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
742 accessor.Remove(dicomInfo); |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
743 |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
744 if (dicomUntilPixelData.IsValid()) |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
745 { |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
746 accessor.Remove(dicomUntilPixelData); |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
747 } |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
748 |
5514 | 749 throw; |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
750 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
751 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
752 // Only keep the metadata for the "instance" level |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
753 dicom.ClearMetadata(); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
754 |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
755 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 756 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
757 { |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
758 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
759 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
760 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
761 if (result.GetStatus() != StoreStatus_Success) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
762 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
763 accessor.Remove(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
764 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
765 if (dicomUntilPixelData.IsValid()) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
766 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
767 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
768 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
769 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
770 |
4994 | 771 if (!isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
772 { |
4994 | 773 // skip logs in case of reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
774 switch (result.GetStatus()) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
775 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
776 case StoreStatus_Success: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
777 LOG(INFO) << "New instance stored (" << resultPublicId << ")"; |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
778 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
779 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
780 case StoreStatus_AlreadyStored: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
781 LOG(INFO) << "Instance already stored (" << resultPublicId << ")"; |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
782 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
783 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
784 case StoreStatus_Failure: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
785 LOG(ERROR) << "Unknown store failure while storing instance " << resultPublicId; |
5296
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
786 throw OrthancException(ErrorCode_InternalError, HttpStatus_500_InternalServerError); |
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
787 |
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
788 case StoreStatus_StorageFull: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
789 LOG(ERROR) << "Storage full while storing instance " << resultPublicId; |
5296
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
790 throw OrthancException(ErrorCode_FullStorage, HttpStatus_507_InsufficientStorage); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
791 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
792 default: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
793 // This should never happen |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
794 break; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
795 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
796 |
4994 | 797 // skip all signals if this is a reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
798 if (result.GetStatus() == StoreStatus_Success || |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
799 result.GetStatus() == StoreStatus_AlreadyStored) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
800 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
801 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
802 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
803 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
804 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
805 try |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
806 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
807 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
808 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
809 catch (OrthancException& e) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
810 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
811 LOG(ERROR) << "Error in the " << it->GetDescription() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
812 << " callback while receiving an instance: " << e.What() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
813 << " (code " << e.GetErrorCode() << ")"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
814 } |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
815 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
816 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
817 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
818 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
819 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
820 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
821 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
822 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
823 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
824 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
825 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
826 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
827 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
828 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
829 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
830 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
831 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
832 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
833 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId, |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
834 DicomInstanceToStore& receivedDicom, |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
835 StoreInstanceMode mode) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
836 { |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
837 DicomInstanceToStore* dicom = &receivedDicom; |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
838 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
839 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
840 // be the same as that of "dicom" |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
841 MallocMemoryBuffer modifiedBuffer; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
842 std::unique_ptr<DicomInstanceToStore> modifiedDicom; |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
843 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
844 #if ORTHANC_ENABLE_PLUGINS == 1 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
845 if (HasPlugins()) |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
846 { |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
847 // New in Orthanc 1.10.0 |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
848 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
849 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks( |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
850 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin()); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
851 |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
852 switch (action) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
853 { |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
854 case OrthancPluginReceivedInstanceAction_Discard: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
855 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
856 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
857 StoreResult result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
858 result.SetStatus(StoreStatus_FilteredOut); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
859 return result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
860 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
861 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
862 case OrthancPluginReceivedInstanceAction_KeepAsIs: |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
863 // This path is also used when no ReceivedInstanceCallback is installed by the plugins |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
864 break; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
865 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
866 case OrthancPluginReceivedInstanceAction_Modify: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
867 if (modifiedBuffer.GetSize() > 0 && |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
868 modifiedBuffer.GetData() != NULL) |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
869 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
870 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
871 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize())); |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
872 modifiedDicom->SetOrigin(receivedDicom.GetOrigin()); |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
873 dicom = modifiedDicom.get(); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
874 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
875 else |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
876 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
877 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance"); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
878 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
879 break; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
880 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
881 default: |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
882 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value"); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
883 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
884 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
885 #endif |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
886 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
887 return TranscodeAndStore(resultPublicId, dicom, mode); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
888 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
889 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
890 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
891 DicomInstanceToStore* dicom, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
892 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
893 bool isReconstruct) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
894 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
895 |
5148
2df546a76e17
If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration
Alain Mazy <am@osimis.io>
parents:
5147
diff
changeset
|
896 if (!isIngestTranscoding_ || dicom->SkipIngestTranscoding()) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
897 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
898 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
899 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
900 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
901 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
902 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
903 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
904 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
905 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
906 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
907 DicomTransferSyntax sourceSyntax; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
908 if (!dicom->LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
909 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
910 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
911 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
912 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
913 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
914 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
915 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
916 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
917 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
918 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
919 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
920 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
921 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
922 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
923 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
924 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
925 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
926 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
927 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
928 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
929 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
930 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
931 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
932 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
933 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
934 // No transcoding |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
935 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
936 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
937 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
938 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
939 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
940 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
941 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
942 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
943 IDicomTranscoder::DicomImage source; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
944 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
945 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
946 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
947 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
948 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
949 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
950 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
951 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
952 toStore->SetOrigin(dicom->GetOrigin()); |
5147
19ccae2e0371
Fix issue #212 (Anonymization process transcodes data and loses resource link)
Alain Mazy <am@osimis.io>
parents:
5111
diff
changeset
|
953 toStore->CopyMetadata(dicom->GetMetadata()); |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
954 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
955 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct); |
3938 | 956 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
957 | |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
958 return result; |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
959 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
960 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
961 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
962 // Cannot transcode => store the original file |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
963 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
964 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
965 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
966 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
967 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
968 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
969 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
970 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
971 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
972 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
973 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
974 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
975 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
976 if (!index_.LookupAttachment(attachment, revision, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
977 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
978 throw OrthancException(ErrorCode_UnknownResource); |
236 | 979 } |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
980 else |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
981 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
982 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
983 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
984 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
985 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
986 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
987 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
988 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
989 ResourceType resourceType, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
990 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
991 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
992 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
993 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
994 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
995 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
996 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
997 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
998 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
999 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1000 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType)) |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1001 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1002 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1003 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1004 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1005 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1006 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1007 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1008 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1009 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1010 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1011 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1012 |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1013 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1014 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1015 |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1016 std::string newUuid = Toolbox::GenerateUuid(); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1017 std::string newCustomData; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1018 FileInfo modified; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1019 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1020 // if (attachmentType == FileContentType_Dicom || attachmentType == FileContentType_DicomUntilPixelData) |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1021 // { |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1022 // // DicomInstanceToStore instance; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1023 // // TODO_CUSTOM_DATA: get the Instance such that we can call accessor.GetCustomData ... |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1024 // // modified = accessor.WriteInstance(newCustomData, instance, content.empty() ? NULL : content.c_str(), |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1025 // // content.size(), attachmentType, compression, storeMD5_, newUuid); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1026 // } |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1027 // else |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1028 { |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1029 ResourceType resourceType = ResourceType_Instance; //TODO_CUSTOM_DATA: get it from above in the stack |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1030 modified = accessor.WriteAttachment(newCustomData, resourceId, resourceType, content.empty() ? NULL : content.c_str(), |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1031 content.size(), attachmentType, compression, storeMD5_, newUuid); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1032 } |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1033 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1034 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1035 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1036 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1037 { |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1038 int64_t newRevision; // ignored |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1039 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1040 true, revision, modified.GetUncompressedMD5()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1632
diff
changeset
|
1041 if (status != StoreStatus_Success) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1042 { |
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|
1043 accessor.Remove(modified); |
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1044 throw OrthancException(ErrorCode_Database); |
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1045 } |
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1046 } |
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|
1047 catch (OrthancException&) |
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1048 { |
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|
1049 accessor.Remove(modified); |
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1050 throw; |
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1051 } |
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1052 } |
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1053 |
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1054 |
4514
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|
1055 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
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1056 { |
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1057 // This is for backward compatibility with Orthanc <= 1.9.0 |
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1058 Json::Value pixelData = Json::objectValue; |
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1059 pixelData["Name"] = "PixelData"; |
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1060 pixelData["Type"] = "Null"; |
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|
1061 pixelData["Value"] = Json::nullValue; |
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1062 |
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1063 dicomAsJson["7fe0,0010"] = pixelData; |
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1064 } |
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1065 |
5772
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1066 |
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1067 static bool LookupMetadata(std::string& value, |
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1068 MetadataType key, |
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1069 const std::map<MetadataType, std::string>& instanceMetadata) |
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1070 { |
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1071 std::map<MetadataType, std::string>::const_iterator found = instanceMetadata.find(key); |
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1072 |
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1073 if (found == instanceMetadata.end()) |
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1074 { |
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1075 return false; |
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1076 } |
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1077 else |
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1078 { |
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1079 value = found->second; |
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1080 return true; |
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1081 } |
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1082 } |
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1083 |
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1084 |
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1085 static bool LookupAttachment(FileInfo& target, |
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1086 FileContentType type, |
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1087 const std::map<FileContentType, FileInfo>& attachments) |
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1088 { |
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1089 std::map<FileContentType, FileInfo>::const_iterator found = attachments.find(type); |
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1090 |
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1091 if (found == attachments.end()) |
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1092 { |
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1093 return false; |
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1094 } |
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1095 else if (found->second.GetContentType() == type) |
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1096 { |
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|
1097 target = found->second; |
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1098 return true; |
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1099 } |
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1100 else |
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1101 { |
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1102 throw OrthancException(ErrorCode_DatabasePlugin); |
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1103 } |
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1104 } |
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1105 |
4514
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1106 |
2124 | 1107 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
1108 const std::string& instancePublicId, |
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|
1109 const std::set<DicomTag>& ignoreTagLength) |
226
8a26a8e85edf
refactoring to read files
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diff
changeset
|
1110 { |
5772
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1111 // TODO-FIND: This is a compatibility method, should be removed |
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1112 |
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|
1113 std::map<MetadataType, std::string> metadata; |
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1114 std::map<FileContentType, FileInfo> attachments; |
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1115 |
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1116 FileInfo attachment; |
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|
1117 int64_t revision; // Ignored |
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1118 |
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1119 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
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1120 { |
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1121 attachments[FileContentType_Dicom] = attachment; |
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1122 } |
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1123 |
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1124 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
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1125 { |
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1126 attachments[FileContentType_DicomUntilPixelData] = attachment; |
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1127 } |
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1128 |
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1129 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson)) |
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1130 { |
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1131 attachments[FileContentType_DicomAsJson] = attachment; |
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1132 } |
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1133 |
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|
1134 std::string s; |
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1135 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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1136 MetadataType_Instance_PixelDataOffset)) |
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1137 { |
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1138 metadata[MetadataType_Instance_PixelDataOffset] = s; |
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1139 } |
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1140 |
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1141 ReadDicomAsJson(result, instancePublicId, metadata, attachments, ignoreTagLength); |
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1142 } |
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1143 |
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1144 |
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1145 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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1146 const std::string& instancePublicId, |
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1147 const std::map<MetadataType, std::string>& instanceMetadata, |
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1148 const std::map<FileContentType, FileInfo>& instanceAttachments, |
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1149 const std::set<DicomTag>& ignoreTagLength) |
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1150 { |
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1151 /** |
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1152 * CASE 1: The DICOM file, truncated at pixel data, is available |
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1153 * as an attachment (it was created either because the storage |
4666 | 1154 * area does not support range reads, or if "StorageCompression" |
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1155 * is enabled). Simply return this attachment. |
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1156 **/ |
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1157 |
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1158 FileInfo attachment; |
5772
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1159 |
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1160 if (LookupAttachment(attachment, FileContentType_DicomUntilPixelData, instanceAttachments)) |
2409
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1161 { |
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1162 std::string dicom; |
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1163 |
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1164 { |
5184
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1165 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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1166 accessor.Read(dicom, attachment); |
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1167 } |
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1168 |
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1169 ParsedDicomFile parsed(dicom); |
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1170 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1171 InjectEmptyPixelData(result); |
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1172 } |
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1173 else |
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1174 { |
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1175 /** |
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1176 * The truncated DICOM file is not stored as a standalone |
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1177 * attachment. Lookup whether the pixel data offset has already |
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1178 * been computed for this instance. |
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1179 **/ |
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1180 |
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1181 bool hasPixelDataOffset; |
4519 | 1182 uint64_t pixelDataOffset = 0; // dummy initialization |
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1183 |
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1184 { |
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1185 std::string s; |
5772
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1186 if (LookupMetadata(s, MetadataType_Instance_PixelDataOffset, instanceMetadata)) |
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1187 { |
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1188 hasPixelDataOffset = false; |
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1189 |
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1190 if (!s.empty()) |
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1191 { |
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1192 try |
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1193 { |
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1194 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1195 hasPixelDataOffset = true; |
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1196 } |
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1197 catch (boost::bad_lexical_cast&) |
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1198 { |
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1199 } |
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1200 } |
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1201 |
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1202 if (!hasPixelDataOffset) |
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1203 { |
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1204 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1205 } |
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1206 } |
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1207 else |
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1208 { |
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1209 // This instance was created by a version of Orthanc <= 1.9.0 |
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1210 hasPixelDataOffset = false; |
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1211 } |
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1212 } |
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1213 |
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1214 |
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1215 if (hasPixelDataOffset && |
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1216 area_.HasReadRange() && |
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1217 LookupAttachment(attachment, FileContentType_Dicom, instanceAttachments) && |
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1218 attachment.GetCompressionType() == CompressionType_None) |
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1219 { |
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1220 /** |
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1221 * CASE 2: The pixel data offset is known, AND that a range read |
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1222 * can be used to retrieve the truncated DICOM file. Note that |
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1223 * this case cannot be used if "StorageCompression" option is |
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1224 * "true". |
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1225 **/ |
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1226 |
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1227 std::string dicom; |
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1228 |
4519 | 1229 { |
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1230 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
5420
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1231 accessor.ReadStartRange(dicom, attachment, pixelDataOffset); |
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1232 } |
4900
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1233 |
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1234 assert(dicom.size() == pixelDataOffset); |
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1235 ParsedDicomFile parsed(dicom); |
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1236 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1237 InjectEmptyPixelData(result); |
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1238 } |
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1239 else if (ignoreTagLength.empty() && |
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1240 LookupAttachment(attachment, FileContentType_DicomAsJson, instanceAttachments)) |
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1241 { |
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1242 /** |
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1243 * CASE 3: This instance was created using Orthanc <= |
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1244 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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1245 * This is for backward compatibility: A call to |
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1246 * "/tools/invalidate-tags" or to one flavors of |
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|
1247 * "/.../.../reconstruct" will disable this case. |
5b929e6b3c36
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|
1248 **/ |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4513
diff
changeset
|
1249 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1250 std::string dicomAsJson; |
4513
1f455b86b054
simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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4511
diff
changeset
|
1251 |
4514
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1252 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1253 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
4514
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parents:
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diff
changeset
|
1254 accessor.Read(dicomAsJson, attachment); |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1255 } |
4513
1f455b86b054
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Sebastien Jodogne <s.jodogne@gmail.com>
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4511
diff
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|
1256 |
4514
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diff
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|
1257 if (!Toolbox::ReadJson(result, dicomAsJson)) |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1258 { |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1259 throw OrthancException(ErrorCode_CorruptedFile, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1260 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
5b929e6b3c36
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diff
changeset
|
1261 } |
5b929e6b3c36
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diff
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|
1262 } |
5b929e6b3c36
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diff
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|
1263 else |
5b929e6b3c36
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4513
diff
changeset
|
1264 { |
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diff
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|
1265 /** |
5b929e6b3c36
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diff
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|
1266 * CASE 4: Neither the truncated DICOM file is accessible, nor |
5b929e6b3c36
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diff
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|
1267 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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changeset
|
1268 * file from the storage area. |
5b929e6b3c36
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diff
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|
1269 **/ |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1270 |
5b929e6b3c36
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diff
changeset
|
1271 std::string dicom; |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1272 ReadDicom(dicom, instancePublicId); |
4513
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diff
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|
1273 |
4514
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diff
changeset
|
1274 ParsedDicomFile parsed(dicom); |
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diff
changeset
|
1275 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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diff
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|
1276 |
5b929e6b3c36
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diff
changeset
|
1277 if (!hasPixelDataOffset) |
5b929e6b3c36
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diff
changeset
|
1278 { |
5b929e6b3c36
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diff
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|
1279 /** |
5b929e6b3c36
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diff
changeset
|
1280 * The pixel data offset was never computed for this |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1281 * instance, which indicates that it was created using |
5b929e6b3c36
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|
1282 * Orthanc <= 1.9.0, or that calls to |
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|
1283 * "LookupPixelDataOffset()" from earlier versions of |
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|
1284 * Orthanc have failed. Try again this precomputation now |
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|
1285 * for future calls. |
5b929e6b3c36
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diff
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|
1286 **/ |
5316
03501a258d9e
added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
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5296
diff
changeset
|
1287 ValueRepresentation pixelDataVR; |
03501a258d9e
added instance metadata "PixelDataVR"
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5296
diff
changeset
|
1288 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, pixelDataVR, dicom) && |
4514
5b929e6b3c36
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diff
changeset
|
1289 pixelDataOffset < dicom.size()) |
4513
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|
1290 { |
4623
95ffe3b6ef7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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4607
diff
changeset
|
1291 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
95ffe3b6ef7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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4607
diff
changeset
|
1292 boost::lexical_cast<std::string>(pixelDataOffset)); |
4514
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diff
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|
1293 |
5b929e6b3c36
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diff
changeset
|
1294 if (!area_.HasReadRange() || |
4519 | 1295 compressionEnabled_) |
4514
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diff
changeset
|
1296 { |
4627
f7d5372b59b3
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4623
diff
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|
1297 int64_t newRevision; |
5080
d7274e43ea7c
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Alain Mazy <am@osimis.io>
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5060
diff
changeset
|
1298 AddAttachment(newRevision, instancePublicId, ResourceType_Instance, FileContentType_DicomUntilPixelData, |
4627
f7d5372b59b3
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diff
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|
1299 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset, |
5080
d7274e43ea7c
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5060
diff
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|
1300 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */); |
4514
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diff
changeset
|
1301 } |
4513
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|
1302 } |
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changeset
|
1303 } |
1f455b86b054
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|
1304 } |
226
8a26a8e85edf
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224
diff
changeset
|
1305 } |
8a26a8e85edf
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224
diff
changeset
|
1306 } |
227
209ca3f6db62
dicom-scu from rest
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diff
changeset
|
1307 |
209ca3f6db62
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changeset
|
1308 |
4511
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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diff
changeset
|
1309 void ServerContext::ReadDicomAsJson(Json::Value& result, |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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changeset
|
1310 const std::string& instancePublicId) |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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|
1311 { |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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|
1312 std::set<DicomTag> ignoreTagLength; |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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changeset
|
1313 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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ServerContext::ReadDicomUntilPixelData()
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|
1314 } |
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ServerContext::ReadDicomUntilPixelData()
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|
1315 |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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changeset
|
1316 |
4509
98b7b9d21d83
removed ServerContext::ReadAttachment()
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diff
changeset
|
1317 void ServerContext::ReadDicom(std::string& dicom, |
5427 | 1318 std::string& attachmentId, |
4509
98b7b9d21d83
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changeset
|
1319 const std::string& instancePublicId) |
98b7b9d21d83
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|
1320 { |
4627
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4623
diff
changeset
|
1321 int64_t revision; |
5427 | 1322 ReadAttachment(dicom, revision, attachmentId, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
1323 } | |
1324 | |
1325 | |
1326 void ServerContext::ReadDicom(std::string& dicom, | |
1327 const std::string& instancePublicId) | |
1328 { | |
1329 std::string attachmentId; | |
1330 ReadDicom(dicom, attachmentId, instancePublicId); | |
4509
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removed ServerContext::ReadAttachment()
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changeset
|
1331 } |
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
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changeset
|
1332 |
434843934307
Added a StorageCache in the StorageAccessor
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|
1333 void ServerContext::ReadDicomForHeader(std::string& dicom, |
434843934307
Added a StorageCache in the StorageAccessor
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|
1334 const std::string& instancePublicId) |
434843934307
Added a StorageCache in the StorageAccessor
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|
1335 { |
434843934307
Added a StorageCache in the StorageAccessor
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|
1336 if (!ReadDicomUntilPixelData(dicom, instancePublicId)) |
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Added a StorageCache in the StorageAccessor
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changeset
|
1337 { |
434843934307
Added a StorageCache in the StorageAccessor
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changeset
|
1338 ReadDicom(dicom, instancePublicId); |
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|
1339 } |
434843934307
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changeset
|
1340 } |
4509
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|
1341 |
4511
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1342 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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ServerContext::ReadDicomUntilPixelData()
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|
1343 const std::string& instancePublicId) |
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1344 { |
5333
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changeset
|
1345 FileInfo attachment; |
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changeset
|
1346 int64_t revision; // Ignored |
816968b5a031
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|
1347 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
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|
1348 { |
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changeset
|
1349 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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changeset
|
1350 |
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changeset
|
1351 accessor.Read(dicom, attachment); |
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changeset
|
1352 assert(dicom.size() == attachment.GetUncompressedSize()); |
816968b5a031
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changeset
|
1353 |
816968b5a031
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changeset
|
1354 return true; |
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changeset
|
1355 } |
816968b5a031
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changeset
|
1356 |
4511
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changeset
|
1357 if (!area_.HasReadRange()) |
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ServerContext::ReadDicomUntilPixelData()
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|
1358 { |
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changeset
|
1359 return false; |
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|
1360 } |
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ServerContext::ReadDicomUntilPixelData()
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|
1361 |
4627
f7d5372b59b3
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changeset
|
1362 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
4511
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diff
changeset
|
1363 { |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1364 throw OrthancException(ErrorCode_InternalError, |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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parents:
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diff
changeset
|
1365 "Unable to read the DICOM file of instance " + instancePublicId); |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1366 } |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1367 |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1368 std::string s; |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1369 |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1370 if (attachment.GetCompressionType() == CompressionType_None && |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1371 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
4511
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1372 MetadataType_Instance_PixelDataOffset) && |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1373 !s.empty()) |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1374 { |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1375 try |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1376 { |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1377 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
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diff
changeset
|
1378 |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
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5183
diff
changeset
|
1379 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
1380 |
5420
d37dff2c0028
Optimized the MemoryStringCache to prevent loading the same file multiple times if multiple users request the same file at the same time
Alain Mazy <am@osimis.io>
parents:
5410
diff
changeset
|
1381 accessor.ReadStartRange(dicom, attachment, pixelDataOffset); |
4900
ea5f1c6ed07e
fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
1382 assert(dicom.size() == pixelDataOffset); |
ea5f1c6ed07e
fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
1383 |
4511
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1384 return true; // Success |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1385 } |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1386 catch (boost::bad_lexical_cast&) |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1387 { |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1388 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1389 } |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1390 } |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1391 |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1392 return false; |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1393 } |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1394 |
1ec156a0da38
ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4509
diff
changeset
|
1395 |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
1396 void ServerContext::ReadAttachment(std::string& result, |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1397 int64_t& revision, |
5427 | 1398 std::string& attachmentId, |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
1399 const std::string& instancePublicId, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
1400 FileContentType content, |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1401 bool uncompressIfNeeded, |
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1402 bool skipCache) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
1403 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
1404 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1405 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content)) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
1406 { |
2956 | 1407 throw OrthancException(ErrorCode_InternalError, |
1408 "Unable to read attachment " + EnumerationToString(content) + | |
1409 " of instance " + instancePublicId); | |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
1410 } |
1550 | 1411 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1412 assert(attachment.GetContentType() == content); |
5427 | 1413 attachmentId = attachment.GetUuid(); |
1414 | |
1550 | 1415 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1416 std::unique_ptr<StorageAccessor> accessor; |
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1417 |
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1418 if (skipCache) |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1419 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1420 accessor.reset(new StorageAccessor(area_, GetMetricsRegistry())); |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1421 } |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1422 else |
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1423 { |
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1424 accessor.reset(new StorageAccessor(area_, storageCache_, GetMetricsRegistry())); |
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1425 } |
4509
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1426 |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1427 if (uncompressIfNeeded) |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1428 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1429 accessor->Read(result, attachment); |
4509
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1430 } |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1431 else |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1432 { |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1433 // Do not uncompress the content of the storage area, return the |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1434 // raw data |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1435 accessor->ReadRaw(result, attachment); |
4509
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1436 } |
1550 | 1437 } |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
1438 } |
285
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1439 |
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1440 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1441 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1442 const std::string& instancePublicId) : |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1443 context_(context), |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1444 instancePublicId_(instancePublicId) |
285
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1445 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1446 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1447 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1448 if (!accessor_->IsValid()) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1449 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1450 accessor_.reset(NULL); |
285
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1451 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1452 // Throttle to avoid loading several large DICOM files simultaneously |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1453 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1454 |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1455 context_.ReadDicom(buffer_, instancePublicId_); |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1456 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1457 // Release the throttle if loading "small" DICOM files (under |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1458 // 50MB, which is an arbitrary value) |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1459 if (buffer_.size() < 50 * 1024 * 1024) |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1460 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1461 largeDicomLocker_.reset(NULL); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1462 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1463 |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1464 dicom_.reset(new ParsedDicomFile(buffer_)); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1465 dicomSize_ = buffer_.size(); |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1466 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1467 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1468 assert(accessor_.get() != NULL || |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1469 dicom_.get() != NULL); |
778
aebf0071020e
refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
774
diff
changeset
|
1470 } |
aebf0071020e
refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
774
diff
changeset
|
1471 |
aebf0071020e
refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
774
diff
changeset
|
1472 |
aebf0071020e
refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
774
diff
changeset
|
1473 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
aebf0071020e
refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
774
diff
changeset
|
1474 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1475 if (dicom_.get() != NULL) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1476 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1477 try |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1478 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1479 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1480 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1481 catch (OrthancException&) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1482 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1483 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1484 } |
285
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1485 } |
304 | 1486 |
1487 | |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1488 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1489 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1490 if (dicom_.get() != NULL) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1491 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1492 return *dicom_; |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1493 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1494 else |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1495 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1496 assert(accessor_.get() != NULL); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1497 return accessor_->GetDicom(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1498 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1499 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1500 |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1501 const std::string& ServerContext::DicomCacheLocker::GetBuffer() |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1502 { |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1503 if (buffer_.size() > 0) |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1504 { |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1505 return buffer_; |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1506 } |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1507 else |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1508 { |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1509 context_.ReadDicom(buffer_, instancePublicId_); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1510 return buffer_; |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1511 } |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
1512 } |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1513 |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1514 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1515 { |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1516 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1517 storeMD5_ = storeMD5; |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1518 } |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1519 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1520 |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1521 bool ServerContext::AddAttachment(int64_t& newRevision, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1522 const std::string& resourceId, |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1523 ResourceType resourceType, |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1524 FileContentType attachmentType, |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1525 const void* data, |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1526 size_t size, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1527 bool hasOldRevision, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1528 int64_t oldRevision, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1529 const std::string& oldMD5) |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1530 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1531 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1532 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1533 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1534 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1535 |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1536 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
5807 | 1537 |
5080
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1538 std::string uuid = Toolbox::GenerateUuid(); |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1539 std::string customData; |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1540 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1541 assert(attachmentType != FileContentType_Dicom && attachmentType != FileContentType_DicomUntilPixelData); // this method can not be used to store instances |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1542 |
d7274e43ea7c
allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1543 FileInfo attachment = accessor.WriteAttachment(customData, resourceId, resourceType, data, size, attachmentType, compression, storeMD5_, uuid); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1544 |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1545 try |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1546 { |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1547 StoreStatus status = index_.AddAttachment( |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1548 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1549 if (status != StoreStatus_Success) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1550 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1551 accessor.Remove(attachment); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1552 return false; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1553 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1554 else |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1555 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1556 return true; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1557 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1558 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1559 catch (OrthancException&) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1560 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1561 // Fixed in Orthanc 1.9.6 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1562 accessor.Remove(attachment); |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1563 throw; |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1564 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1565 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1566 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1567 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1568 bool ServerContext::DeleteResource(Json::Value& remainingAncestor, |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1569 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1570 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1571 { |
2507 | 1572 if (expectedType == ResourceType_Instance) |
1573 { | |
1574 // remove the file from the DicomCache | |
1575 dicomCache_.Invalidate(uuid); | |
1576 } | |
1577 | |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1578 return index_.DeleteResource(remainingAncestor, uuid, expectedType); |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1579 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1580 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1581 |
1198 | 1582 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1583 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1584 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1585 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1586 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1587 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1588 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1589 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1590 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1591 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1592 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1593 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1594 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1595 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1596 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1597 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1598 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1599 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1600 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1601 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1602 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1603 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1604 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1605 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1606 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1607 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1608 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1609 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1610 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1611 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1612 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1613 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1614 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1615 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1616 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1617 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1618 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1619 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1620 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1621 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1622 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1623 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1624 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1625 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1626 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1627 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1628 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1629 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1630 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1631 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1632 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1633 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1634 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1635 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1636 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1637 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1638 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1639 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1640 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1641 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1642 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1643 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1644 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1645 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1646 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1647 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1648 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1649 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1650 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1651 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1652 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1653 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1654 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1655 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1656 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1657 void ServerContext::Apply(ILookupVisitor& visitor, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1658 const DatabaseLookup& lookup, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1659 ResourceType queryLevel, |
5683
0c218d90096e
moved handling of labels out of DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5669
diff
changeset
|
1660 const std::set<std::string>& labels, |
0c218d90096e
moved handling of labels out of DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5669
diff
changeset
|
1661 LabelsConstraint labelsConstraint, |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1662 size_t since, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1663 size_t limit) |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1664 { |
5688
d0a264b803f1
first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5686
diff
changeset
|
1665 const uint64_t databaseLimit = GetDatabaseLimits(queryLevel); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1666 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1667 std::vector<std::string> resources, instances; |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1668 const DicomTagConstraint* dicomModalitiesConstraint = NULL; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1669 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1670 bool hasModalitiesInStudyLookup = (queryLevel == ResourceType_Study && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1671 lookup.GetConstraint(dicomModalitiesConstraint, DICOM_TAG_MODALITIES_IN_STUDY) && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1672 ((dicomModalitiesConstraint->GetConstraintType() == ConstraintType_Equal && !dicomModalitiesConstraint->GetValue().empty()) || |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1673 (dicomModalitiesConstraint->GetConstraintType() == ConstraintType_List && !dicomModalitiesConstraint->GetValues().empty()))); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1674 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1675 std::unique_ptr<DatabaseLookup> fastLookup(lookup.Clone()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1676 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1677 if (hasModalitiesInStudyLookup) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1678 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1679 fastLookup->RemoveConstraint(DICOM_TAG_MODALITIES_IN_STUDY); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1680 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1681 |
5714
2b05428843d2
removed dangerous overload of ResourceFinder::Execute()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5690
diff
changeset
|
1682 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
2b05428843d2
removed dangerous overload of ResourceFinder::Execute()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5690
diff
changeset
|
1683 GetIndex().ApplyLookupResources(resources, &instances, *fastLookup, queryLevel, labels, labelsConstraint, lookupLimit); |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
1684 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
1685 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1686 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1687 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
1688 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1689 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1690 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1691 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1692 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1693 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1694 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1695 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1696 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1697 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1698 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1699 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1700 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1701 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1702 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1703 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1704 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1705 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1706 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1707 boost::shared_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1708 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1709 bool hasOnlyMainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1710 DicomMap dicom; |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1711 DicomMap allMainDicomTagsFromDB; |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1712 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1713 if (!IsStorageAccessAllowedForAnswers(findStorageAccessMode_) |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1714 || fastLookup->HasOnlyMainDicomTags()) |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1715 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1716 // Case (1): The main DICOM tags, as stored in the database, |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1717 // are sufficient to look for match |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1718 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
1719 if (!GetIndex().GetAllMainDicomTags(allMainDicomTagsFromDB, instances[i])) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1720 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1721 // The instance has been removed during the execution of the |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1722 // lookup, ignore it |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1723 continue; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1724 } |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1725 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1726 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1727 // level of interest for the query |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1728 switch (queryLevel) |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1729 { |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1730 // WARNING: Don't reorder cases below, and don't add "break" |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1731 case ResourceType_Instance: |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1732 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Instance); |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1733 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1734 case ResourceType_Series: |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1735 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Series); |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1736 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1737 case ResourceType_Study: |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1738 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Study); |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1739 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1740 case ResourceType_Patient: |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1741 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Patient); |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1742 break; |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1743 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1744 default: |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1745 throw OrthancException(ErrorCode_InternalError); |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1746 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1747 |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1748 hasOnlyMainDicomTags = true; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1749 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1750 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1751 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1752 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1753 // the storage area |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1754 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1755 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1756 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1757 dicom.FromDicomAsJson(*dicomAsJson); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1758 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1759 // This map contains the entire JSON, i.e. more than the main DICOM tags |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1760 hasOnlyMainDicomTags = false; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1761 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1762 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1763 if (fastLookup->IsMatch(dicom)) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1764 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1765 bool isMatch = true; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1766 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1767 if (hasModalitiesInStudyLookup) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1768 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1769 std::set<DicomTag> requestedTags; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1770 requestedTags.insert(DICOM_TAG_MODALITIES_IN_STUDY); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1771 ExpandedResource resource; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1772 ComputeStudyTags(resource, *this, resources[i], requestedTags); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1773 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1774 std::vector<std::string> modalities; |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
1775 Toolbox::TokenizeString(modalities, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY).GetContent(), '\\'); |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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4977
diff
changeset
|
1776 bool hasAtLeastOneModalityMatching = false; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1777 for (size_t m = 0; m < modalities.size(); m++) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1778 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1779 hasAtLeastOneModalityMatching |= dicomModalitiesConstraint->IsMatch(modalities[m]); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1780 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1781 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1782 isMatch = isMatch && hasAtLeastOneModalityMatching; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1783 // copy the value of ModalitiesInStudy such that it can be reused to build the answer |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
1784 allMainDicomTagsFromDB.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY)); |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1785 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1786 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1787 if (isMatch) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1788 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1789 if (skipped < since) |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1790 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1791 skipped++; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1792 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1793 else if (limit != 0 && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1794 countResults >= limit) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1795 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1796 // Too many results, don't mark as complete |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1797 complete = false; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1798 break; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1799 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1800 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1801 { |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1802 if (IsStorageAccessAllowedForAnswers(findStorageAccessMode_) && |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1803 dicomAsJson.get() == NULL && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1804 isDicomAsJsonNeeded) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1805 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1806 dicomAsJson.reset(new Json::Value); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1807 ReadDicomAsJson(*dicomAsJson, instances[i]); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1808 } |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1809 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1810 if (hasOnlyMainDicomTags) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1811 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1812 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1813 visitor.Visit(resources[i], instances[i], allMainDicomTagsFromDB, dicomAsJson.get()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1814 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1815 else |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1816 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1817 // Remove the non-main DICOM tags from "dicom" if Case (2) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1818 // was used, for consistency with Case (1) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1819 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1820 DicomMap mainDicomTags; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1821 mainDicomTags.ExtractMainDicomTags(dicom); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1822 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1823 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1824 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1825 countResults ++; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1826 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1827 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1828 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1829 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1830 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1831 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1832 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1833 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1834 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1835 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1836 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1837 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1838 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1839 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1840 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1841 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1842 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1843 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1844 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1845 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1846 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1847 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1848 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1849 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1850 { |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1851 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1852 if (index_.LookupMetadata(target, revision, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1853 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1854 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1855 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1856 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1857 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1858 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1859 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1860 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1861 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1862 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1863 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1864 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1865 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1866 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1867 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1868 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1869 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1870 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1871 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1872 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1873 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1874 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1875 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1876 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1877 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1878 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1879 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1880 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1881 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1882 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1883 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1884 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1885 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1886 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1887 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1888 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1889 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1890 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1891 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1892 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1893 // Store for reuse |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1894 index_.OverwriteMetadata(publicId, metadata, target); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1895 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1896 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1897 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1898 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1899 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1900 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1901 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1902 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1903 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1904 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1905 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1906 // No backward |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1907 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1908 return index_.LookupMetadata(target, revision, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1909 } |
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1910 } |
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1911 |
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1912 |
2626 | 1913 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1914 const std::string& publicId) | |
1915 { | |
1916 std::list<std::string> instances; | |
1917 GetIndex().GetChildInstances(instances, publicId); | |
1918 | |
1919 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1920 | |
1921 for (std::list<std::string>::const_iterator | |
1922 it = instances.begin(); it != instances.end(); ++it) | |
1923 { | |
1924 job.AddInstance(*it); | |
1925 } | |
1926 } | |
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1927 |
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1928 |
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1929 void ServerContext::SignalUpdatedModalities() |
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1930 { |
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1931 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1932 if (HasPlugins()) |
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1933 { |
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1934 GetPlugins().SignalUpdatedModalities(); |
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1935 } |
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1936 #endif |
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1937 } |
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1938 |
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1939 |
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1940 void ServerContext::SignalUpdatedPeers() |
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1941 { |
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1942 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1943 if (HasPlugins()) |
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1944 { |
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1945 GetPlugins().SignalUpdatedPeers(); |
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1946 } |
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1947 #endif |
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1948 } |
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1949 |
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1950 |
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1951 IStorageCommitmentFactory::ILookupHandler* |
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1952 ServerContext::CreateStorageCommitment(const std::string& jobId, |
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1953 const std::string& transactionUid, |
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1954 const std::vector<std::string>& sopClassUids, |
3662
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1955 const std::vector<std::string>& sopInstanceUids, |
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1956 const std::string& remoteAet, |
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1957 const std::string& calledAet) |
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1958 { |
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1959 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1960 if (HasPlugins()) |
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1961 { |
3662
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OrthancPluginRegisterStorageCommitmentScpCallback()
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1962 return GetPlugins().CreateStorageCommitment( |
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1963 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
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1964 } |
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1965 #endif |
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1966 |
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1967 return NULL; |
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1968 } |
3894
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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1969 |
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1970 |
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1971 |
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1972 |
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1973 |
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ServerContext::DecodeDicomFrame()
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1974 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
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ServerContext::DecodeDicomFrame()
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1975 unsigned int frameIndex) |
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ServerContext::DecodeDicomFrame()
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1976 { |
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1977 ServerContext::DicomCacheLocker locker(*this, publicId); |
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1978 std::unique_ptr<ImageAccessor> decoded(DecodeDicomFrame(locker.GetDicom(), locker.GetBuffer().c_str(), locker.GetBuffer().size(), frameIndex)); |
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1979 |
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1980 if (decoded.get() == NULL) |
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1981 { |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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1982 OrthancConfiguration::ReaderLock configLock; |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1983 if (configLock.GetConfiguration().IsWarningEnabled(Warnings_003_DecoderFailure)) |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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1984 { |
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|
1985 LOG(WARNING) << "W003: Unable to decode frame " << frameIndex << " from instance " << publicId; |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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1986 } |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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1987 return NULL; |
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1988 } |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1989 |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1990 return decoded.release(); |
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1991 } |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1992 |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1993 |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1994 ImageAccessor* ServerContext::DecodeDicomFrame(const ParsedDicomFile& parsedDicom, |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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1995 const void* buffer, // actually the buffer that is the source of the ParsedDicomFile |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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1996 size_t size, |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
1997 unsigned int frameIndex) |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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1998 { |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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1999 std::unique_ptr<ImageAccessor> decoded; |
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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2000 |
3931
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|
2001 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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2002 { |
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2003 // Use Orthanc's built-in decoder |
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2004 |
4265
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2005 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2006 { |
5743
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
2007 decoded.reset(parsedDicom.DecodeFrame(frameIndex)); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
2008 if (decoded.get() != NULL) |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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changeset
|
2009 { |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
2010 return decoded.release(); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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|
2011 } |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2012 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2013 catch (OrthancException& e) |
5743
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refactored ServerContext::DecodeDicomFrame to have a single implementation
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changeset
|
2014 { // ignore, we'll try other alternatives |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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|
2015 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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changeset
|
2016 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
2017 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
2018 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
2019 if (HasPlugins() && |
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ServerContext::DecodeDicomFrame()
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2020 GetPlugins().HasCustomImageDecoder()) |
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ServerContext::DecodeDicomFrame()
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|
2021 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
2022 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
2023 { |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
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changeset
|
2024 decoded.reset(GetPlugins().Decode(buffer, size, frameIndex)); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2025 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2026 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2027 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2028 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
2029 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
2030 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
2031 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
2032 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
2033 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
2034 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2035 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2036 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
2037 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2038 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2039 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2040 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2041 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
2042 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2043 { |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2044 try |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2045 { |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2046 decoded.reset(parsedDicom.DecodeFrame(frameIndex)); |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2047 if (decoded.get() != NULL) |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2048 { |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2049 return decoded.release(); |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2050 } |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2051 } |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2052 catch (OrthancException& e) |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2053 { |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2054 LOG(INFO) << e.GetDetails(); |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2055 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2056 } |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2057 |
5767
b4fbd9d2c907
fix compilation if plugins are disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5743
diff
changeset
|
2058 #if ORTHANC_ENABLE_PLUGINS == 1 |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2059 if (HasPlugins() && GetPlugins().HasCustomTranscoder()) |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
2060 { |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2061 LOG(INFO) << "The plugins and built-in image decoders failed to decode a frame, " |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2062 << "trying to transcode the file to LittleEndianExplicit using the plugins."; |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2063 DicomImage explicitTemporaryImage; |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2064 DicomImage source; |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2065 std::set<DicomTransferSyntax> allowedSyntaxes; |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2066 |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2067 source.SetExternalBuffer(buffer, size); |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2068 allowedSyntaxes.insert(DicomTransferSyntax_LittleEndianExplicit); |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2069 |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2070 if (Transcode(explicitTemporaryImage, source, allowedSyntaxes, true)) |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2071 { |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2072 std::unique_ptr<ParsedDicomFile> file(explicitTemporaryImage.ReleaseAsParsedDicomFile()); |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2073 return file->DecodeFrame(frameIndex); |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2074 } |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2075 } |
5767
b4fbd9d2c907
fix compilation if plugins are disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5743
diff
changeset
|
2076 #endif |
5742
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2077 |
078b724dcbf8
if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents:
5683
diff
changeset
|
2078 return NULL; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2079 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2080 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2081 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2082 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2083 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2084 { |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2085 return DecodeDicomFrame(dicom.GetParsedDicomFile(), |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2086 dicom.GetBufferData(), |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2087 dicom.GetBufferSize(), |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2088 frameIndex); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2089 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2090 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2091 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
2092 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2093 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2094 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2095 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2096 { |
5743
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2097 std::unique_ptr<ParsedDicomFile> instance(new ParsedDicomFile(dicom, size)); |
8bb3f2fca242
refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents:
5742
diff
changeset
|
2098 return DecodeDicomFrame(*instance, dicom, size, frameIndex); |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2099 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2100 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
2101 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2102 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2103 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2104 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2105 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2106 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2107 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2108 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2109 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2110 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
5438
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
2111 const RemoteModalityParameters& modality = connection.GetParameters().GetRemoteModality(); |
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
2112 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
2113 if (!transcodeDicomProtocol_ || |
5438
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
2114 !modality.IsTranscodingAllowed()) |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2115 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2116 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
5442
ac68a4383e51
improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents:
5438
diff
changeset
|
2117 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2118 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2119 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2120 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
2121 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
5442
ac68a4383e51
improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents:
5438
diff
changeset
|
2122 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2123 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
2124 } |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
2125 |
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
2126 |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2127 bool ServerContext::TranscodeWithCache(std::string& target, |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2128 const std::string& source, |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2129 const std::string& sourceInstanceId, |
5427 | 2130 const std::string& attachmentId, |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2131 DicomTransferSyntax targetSyntax) |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2132 { |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2133 StorageCache::Accessor cacheAccessor(storageCache_); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2134 |
5427 | 2135 if (!cacheAccessor.FetchTranscodedInstance(target, attachmentId, targetSyntax)) |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2136 { |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2137 IDicomTranscoder::DicomImage sourceDicom; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2138 sourceDicom.SetExternalBuffer(source); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2139 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2140 IDicomTranscoder::DicomImage targetDicom; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2141 std::set<DicomTransferSyntax> syntaxes; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2142 syntaxes.insert(targetSyntax); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2143 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2144 if (Transcode(targetDicom, sourceDicom, syntaxes, true)) |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2145 { |
5427 | 2146 cacheAccessor.AddTranscodedInstance(attachmentId, targetSyntax, reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize()); |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2147 target = std::string(reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize()); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
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|
2148 return true; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2149 } |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2150 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2151 return false; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2152 } |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
2153 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2154 return true; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2155 } |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2156 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
2157 |
3944
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2158 bool ServerContext::Transcode(DicomImage& target, |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2159 DicomImage& source /* in, "GetParsed()" possibly modified */, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2160 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2161 bool allowNewSopInstanceUid) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2162 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2163 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2164 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
2165 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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preparing simplified interface for IDicomTranscoder
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parents:
3941
diff
changeset
|
2166 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
2167 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2168 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2169 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
3941
diff
changeset
|
2170 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2171 #if ORTHANC_ENABLE_PLUGINS == 1 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2172 if (HasPlugins() && |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2173 GetPlugins().HasCustomTranscoder()) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2174 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
2175 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
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parents:
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diff
changeset
|
2176 { |
aae045f802f4
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3941
diff
changeset
|
2177 return true; |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2178 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2179 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2180 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2181 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2182 << "fallback to the built-in DCMTK transcoder"; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2183 } |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2184 } |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2185 #endif |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2186 |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2187 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
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|
2188 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
2189 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2190 } |
aae045f802f4
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parents:
3941
diff
changeset
|
2191 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2192 { |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
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|
2193 return false; |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2194 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
2195 } |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2196 |
4376
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
2197 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2198 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2199 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2200 static const std::string emptyContent = ""; |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2201 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2202 const DicomTag& tag = element.GetTag(); |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2203 if (element.GetValue().IsSequence()) |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2204 { |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2205 return emptyContent; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2206 } |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2207 |
4789
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
2208 if (deidentifyLogs_ && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
2209 !element.GetValue().GetContent().empty() && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
2210 logsDeidentifierRules_.IsAlteredTag(tag)) |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2211 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2212 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2213 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2214 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2215 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2216 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2217 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
2218 } |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2219 |
68f52897c119
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diff
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|
2220 |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2221 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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diff
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|
2222 { |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2223 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2224 syntaxes = acceptedTransferSyntaxes_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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4465
diff
changeset
|
2225 } |
68f52897c119
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diff
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|
2226 |
68f52897c119
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diff
changeset
|
2227 |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2228 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
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4465
diff
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|
2229 { |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
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4465
diff
changeset
|
2230 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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4465
diff
changeset
|
2231 acceptedTransferSyntaxes_ = syntaxes; |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2232 } |
68f52897c119
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diff
changeset
|
2233 |
68f52897c119
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diff
changeset
|
2234 |
68f52897c119
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4465
diff
changeset
|
2235 bool ServerContext::IsUnknownSopClassAccepted() |
68f52897c119
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|
2236 { |
68f52897c119
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diff
changeset
|
2237 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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4465
diff
changeset
|
2238 return isUnknownSopClassAccepted_; |
68f52897c119
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diff
changeset
|
2239 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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diff
changeset
|
2240 |
68f52897c119
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changeset
|
2241 |
68f52897c119
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changeset
|
2242 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
68f52897c119
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2243 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2244 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2245 isUnknownSopClassAccepted_ = accepted; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2246 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2247 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2248 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2249 static void SerializeExpandedResource(Json::Value& target, |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2250 const ExpandedResource& resource, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2251 DicomToJsonFormat format, |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2252 const std::set<DicomTag>& requestedTags, |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2253 ExpandResourceFlags expandFlags) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2254 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2255 target = Json::objectValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2256 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2257 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true); |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2258 target["ID"] = resource.GetPublicId(); |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2259 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2260 if (!resource.parentId_.empty()) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2261 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2262 switch (resource.GetLevel()) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2263 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2264 case ResourceType_Patient: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2265 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2266 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2267 case ResourceType_Study: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2268 target["ParentPatient"] = resource.parentId_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2269 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2270 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2271 case ResourceType_Series: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2272 target["ParentStudy"] = resource.parentId_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2273 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2274 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2275 case ResourceType_Instance: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2276 target["ParentSeries"] = resource.parentId_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2277 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2278 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2279 default: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2280 throw OrthancException(ErrorCode_InternalError); |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2281 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2282 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2283 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2284 if ((expandFlags & ExpandResourceFlags_IncludeChildren) != 0) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2285 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2286 switch (resource.GetLevel()) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2287 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2288 case ResourceType_Patient: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2289 case ResourceType_Study: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2290 case ResourceType_Series: |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2291 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2292 Json::Value c = Json::arrayValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2293 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2294 for (std::list<std::string>::const_iterator |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2295 it = resource.childrenIds_.begin(); it != resource.childrenIds_.end(); ++it) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2296 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2297 c.append(*it); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2298 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2299 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2300 if (resource.GetLevel() == ResourceType_Patient) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2301 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2302 target["Studies"] = c; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2303 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2304 else if (resource.GetLevel() == ResourceType_Study) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2305 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2306 target["Series"] = c; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2307 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2308 else |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2309 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2310 target["Instances"] = c; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2311 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2312 break; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2313 } |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2314 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2315 case ResourceType_Instance: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2316 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2317 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2318 default: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2319 throw OrthancException(ErrorCode_InternalError); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2320 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2321 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2322 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2323 if ((expandFlags & ExpandResourceFlags_IncludeMetadata) != 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2324 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2325 switch (resource.GetLevel()) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2326 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2327 case ResourceType_Patient: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2328 case ResourceType_Study: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2329 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
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diff
changeset
|
2330 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2331 case ResourceType_Series: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2332 if (resource.expectedNumberOfInstances_ < 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2333 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2334 target["ExpectedNumberOfInstances"] = Json::nullValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2335 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2336 else |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2337 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2338 target["ExpectedNumberOfInstances"] = resource.expectedNumberOfInstances_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2339 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2340 target["Status"] = resource.status_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2341 break; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2342 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2343 case ResourceType_Instance: |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2344 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2345 target["FileSize"] = static_cast<unsigned int>(resource.fileSize_); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2346 target["FileUuid"] = resource.fileUuid_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2347 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2348 if (resource.indexInSeries_ < 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2349 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2350 target["IndexInSeries"] = Json::nullValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2351 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2352 else |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2353 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2354 target["IndexInSeries"] = resource.indexInSeries_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2355 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2356 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2357 break; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2358 } |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2359 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2360 default: |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2361 throw OrthancException(ErrorCode_InternalError); |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2362 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2363 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2364 if (!resource.anonymizedFrom_.empty()) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2365 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2366 target["AnonymizedFrom"] = resource.anonymizedFrom_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2367 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2368 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2369 if (!resource.modifiedFrom_.empty()) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2370 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2371 target["ModifiedFrom"] = resource.modifiedFrom_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2372 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2373 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2374 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2375 if (resource.GetLevel() == ResourceType_Patient || |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2376 resource.GetLevel() == ResourceType_Study || |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2377 resource.GetLevel() == ResourceType_Series) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2378 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2379 if ((expandFlags & ExpandResourceFlags_IncludeIsStable) != 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2380 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2381 target["IsStable"] = resource.isStable_; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2382 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2383 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2384 if (!resource.lastUpdate_.empty()) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2385 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2386 target["LastUpdate"] = resource.lastUpdate_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2387 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2388 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2389 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2390 if ((expandFlags & ExpandResourceFlags_IncludeMainDicomTags) != 0) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2391 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2392 // serialize tags |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2393 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2394 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2395 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2396 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2397 DicomMap mainDicomTags; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2398 resource.GetMainDicomTags().ExtractResourceInformation(mainDicomTags, resource.GetLevel()); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2399 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2400 target[MAIN_DICOM_TAGS] = Json::objectValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2401 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], mainDicomTags, format); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2402 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2403 if (resource.GetLevel() == ResourceType_Study) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2404 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2405 DicomMap patientMainDicomTags; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2406 resource.GetMainDicomTags().ExtractPatientInformation(patientMainDicomTags); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2407 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2408 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2409 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2410 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2411 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2412 if (requestedTags.size() > 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2413 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2414 static const char* const REQUESTED_TAGS = "RequestedTags"; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2415 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2416 DicomMap tags; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2417 resource.GetMainDicomTags().ExtractTags(tags, requestedTags); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2418 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2419 target[REQUESTED_TAGS] = Json::objectValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2420 FromDcmtkBridge::ToJson(target[REQUESTED_TAGS], tags, format); |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2421 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2422 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2423 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2424 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2425 if ((expandFlags & ExpandResourceFlags_IncludeLabels) != 0) |
5221
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2426 { |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2427 Json::Value labels = Json::arrayValue; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2428 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2429 for (std::set<std::string>::const_iterator it = resource.labels_.begin(); it != resource.labels_.end(); ++it) |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2430 { |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2431 labels.append(*it); |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2432 } |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2433 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2434 target["Labels"] = labels; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
2435 } |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2436 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2437 // new in Orthanc 1.12.4 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2438 if ((expandFlags & ExpandResourceFlags_IncludeAllMetadata) != 0) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2439 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2440 Json::Value metadata = Json::objectValue; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2441 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2442 for (std::map<MetadataType, std::string>::const_iterator it = resource.metadata_.begin(); it != resource.metadata_.end(); ++it) |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2443 { |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2444 metadata[EnumerationToString(it->first)] = it->second; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2445 } |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2446 |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2447 target["Metadata"] = metadata; |
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2448 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2449 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2450 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2451 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2452 static void ComputeInstanceTags(ExpandedResource& resource, |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2453 ServerContext& context, |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2454 const std::string& instancePublicId, |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2455 const std::set<DicomTag>& requestedTags) |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2456 { |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2457 if (requestedTags.count(DICOM_TAG_INSTANCE_AVAILABILITY) > 0) |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2458 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2459 resource.GetMainDicomTags().SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2460 resource.missingRequestedTags_.erase(DICOM_TAG_INSTANCE_AVAILABILITY); |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2461 } |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2462 } |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2463 |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2464 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2465 static void ComputeSeriesTags(ExpandedResource& resource, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2466 ServerContext& context, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2467 const std::string& seriesPublicId, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2468 const std::set<DicomTag>& requestedTags) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2469 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2470 if (requestedTags.count(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) > 0) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2471 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2472 ServerIndex& index = context.GetIndex(); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2473 std::list<std::string> instances; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2474 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2475 index.GetChildren(instances, seriesPublicId); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2476 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2477 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2478 boost::lexical_cast<std::string>(instances.size()), false); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2479 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2480 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2481 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2482 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2483 static void ComputeStudyTags(ExpandedResource& resource, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2484 ServerContext& context, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2485 const std::string& studyPublicId, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2486 const std::set<DicomTag>& requestedTags) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2487 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2488 ServerIndex& index = context.GetIndex(); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2489 std::list<std::string> series; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2490 std::list<std::string> instances; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2491 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2492 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) > 0; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2493 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) > 0; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2494 bool hasModalitiesInStudy = requestedTags.count(DICOM_TAG_MODALITIES_IN_STUDY) > 0; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2495 bool hasSopClassesInStudy = requestedTags.count(DICOM_TAG_SOP_CLASSES_IN_STUDY) > 0; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2496 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2497 index.GetChildren(series, studyPublicId); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2498 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2499 if (hasModalitiesInStudy) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2500 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2501 std::set<std::string> values; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2502 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2503 for (std::list<std::string>::const_iterator |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2504 it = series.begin(); it != series.end(); ++it) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2505 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2506 DicomMap tags; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2507 index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2508 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2509 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2510 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2511 if (value != NULL && |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2512 !value->IsNull() && |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2513 !value->IsBinary()) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2514 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2515 values.insert(value->GetContent()); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2516 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2517 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2518 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2519 std::string modalities; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2520 Toolbox::JoinStrings(modalities, values, "\\"); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2521 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2522 resource.GetMainDicomTags().SetValue(DICOM_TAG_MODALITIES_IN_STUDY, modalities, false); |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2523 resource.missingRequestedTags_.erase(DICOM_TAG_MODALITIES_IN_STUDY); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2524 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2525 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2526 if (hasNbRelatedSeries) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2527 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2528 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2529 boost::lexical_cast<std::string>(series.size()), false); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2530 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2531 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2532 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2533 if (hasNbRelatedInstances || hasSopClassesInStudy) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2534 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2535 for (std::list<std::string>::const_iterator |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2536 it = series.begin(); it != series.end(); ++it) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2537 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2538 std::list<std::string> seriesInstancesIds; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2539 index.GetChildren(seriesInstancesIds, *it); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2540 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2541 instances.splice(instances.end(), seriesInstancesIds); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2542 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2543 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2544 if (hasNbRelatedInstances) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2545 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2546 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
4940
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2547 boost::lexical_cast<std::string>(instances.size()), false); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2548 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2549 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2550 |
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2551 if (hasSopClassesInStudy) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2552 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2553 std::set<std::string> values; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2554 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2555 for (std::list<std::string>::const_iterator |
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2556 it = instances.begin(); it != instances.end(); ++it) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2557 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2558 std::string value; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2559 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2560 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid)) |
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2561 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2562 values.insert(value); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2563 } |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2564 } |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2565 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2566 if (values.size() > 0) |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2567 { |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2568 std::string sopClassUids; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2569 Toolbox::JoinStrings(sopClassUids, values, "\\"); |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2570 resource.GetMainDicomTags().SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, sopClassUids, false); |
4940
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2571 } |
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Alain Mazy <am@osimis.io>
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4939
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changeset
|
2572 |
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2573 resource.missingRequestedTags_.erase(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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Alain Mazy <am@osimis.io>
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4939
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|
2574 } |
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Alain Mazy <am@osimis.io>
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4939
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|
2575 } |
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Alain Mazy <am@osimis.io>
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4939
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changeset
|
2576 } |
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Alain Mazy <am@osimis.io>
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4939
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changeset
|
2577 |
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Alain Mazy <am@osimis.io>
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diff
changeset
|
2578 static void ComputePatientTags(ExpandedResource& resource, |
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2579 ServerContext& context, |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2580 const std::string& patientPublicId, |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2581 const std::set<DicomTag>& requestedTags) |
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Alain Mazy <am@osimis.io>
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4939
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|
2582 { |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2583 ServerIndex& index = context.GetIndex(); |
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2584 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2585 std::list<std::string> studies; |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
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|
2586 std::list<std::string> series; |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2587 std::list<std::string> instances; |
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Alain Mazy <am@osimis.io>
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|
2588 |
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Alain Mazy <am@osimis.io>
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|
2589 bool hasNbRelatedStudies = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) > 0; |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2590 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) > 0; |
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Alain Mazy <am@osimis.io>
parents:
4939
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|
2591 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) > 0; |
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Alain Mazy <am@osimis.io>
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|
2592 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2593 index.GetChildren(studies, patientPublicId); |
304514ce84ee
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Alain Mazy <am@osimis.io>
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|
2594 |
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2595 if (hasNbRelatedStudies) |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2596 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2597 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
4940
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2598 boost::lexical_cast<std::string>(studies.size()), false); |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2599 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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Alain Mazy <am@osimis.io>
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|
2600 } |
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Alain Mazy <am@osimis.io>
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|
2601 |
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Alain Mazy <am@osimis.io>
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4939
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|
2602 if (hasNbRelatedSeries || hasNbRelatedInstances) |
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Alain Mazy <am@osimis.io>
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|
2603 { |
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|
2604 for (std::list<std::string>::const_iterator |
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Alain Mazy <am@osimis.io>
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|
2605 it = studies.begin(); it != studies.end(); ++it) |
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Alain Mazy <am@osimis.io>
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|
2606 { |
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diff
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|
2607 std::list<std::string> thisSeriesIds; |
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Alain Mazy <am@osimis.io>
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|
2608 index.GetChildren(thisSeriesIds, *it); |
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|
2609 series.splice(series.end(), thisSeriesIds); |
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|
2610 } |
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|
2611 |
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changeset
|
2612 if (hasNbRelatedSeries) |
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Alain Mazy <am@osimis.io>
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changeset
|
2613 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
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changeset
|
2614 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
4940
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|
2615 boost::lexical_cast<std::string>(series.size()), false); |
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|
2616 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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|
2617 } |
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|
2618 } |
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changeset
|
2619 |
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changeset
|
2620 if (hasNbRelatedInstances) |
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|
2621 { |
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|
2622 for (std::list<std::string>::const_iterator |
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|
2623 it = series.begin(); it != series.end(); ++it) |
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|
2624 { |
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changeset
|
2625 std::list<std::string> thisInstancesIds; |
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|
2626 index.GetChildren(thisInstancesIds, *it); |
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|
2627 instances.splice(instances.end(), thisInstancesIds); |
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|
2628 } |
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changeset
|
2629 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2630 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
4940
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changeset
|
2631 boost::lexical_cast<std::string>(instances.size()), false); |
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changeset
|
2632 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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|
2633 } |
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|
2634 } |
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|
2635 |
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|
2636 |
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changeset
|
2637 static void ComputeTags(ExpandedResource& resource, |
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diff
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|
2638 ServerContext& context, |
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
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diff
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|
2639 const std::string& resourceId, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2640 ResourceType level, |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2641 const std::set<DicomTag>& requestedTags) |
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Alain Mazy <am@osimis.io>
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|
2642 { |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2643 if (level == ResourceType_Patient |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2644 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Patient)) |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2645 { |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2646 ComputePatientTags(resource, context, resourceId, requestedTags); |
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Alain Mazy <am@osimis.io>
parents:
4939
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|
2647 } |
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Alain Mazy <am@osimis.io>
parents:
4939
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|
2648 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2649 if (level == ResourceType_Study |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2650 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Study)) |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2651 { |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2652 ComputeStudyTags(resource, context, resourceId, requestedTags); |
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Alain Mazy <am@osimis.io>
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4939
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|
2653 } |
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Alain Mazy <am@osimis.io>
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4939
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|
2654 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2655 if (level == ResourceType_Series |
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2656 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Series)) |
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|
2657 { |
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Alain Mazy <am@osimis.io>
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|
2658 ComputeSeriesTags(resource, context, resourceId, requestedTags); |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2659 } |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
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|
2660 |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
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|
2661 if (level == ResourceType_Instance |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
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|
2662 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Instance)) |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
diff
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|
2663 { |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
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|
2664 ComputeInstanceTags(resource, context, resourceId, requestedTags); |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
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|
2665 } |
4940
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Alain Mazy <am@osimis.io>
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|
2666 } |
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Alain Mazy <am@osimis.io>
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|
2667 |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2668 bool ServerContext::ExpandResource(Json::Value& target, |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2669 const std::string& publicId, |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
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4921
diff
changeset
|
2670 ResourceType level, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2671 DicomToJsonFormat format, |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2672 const std::set<DicomTag>& requestedTags, |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2673 bool allowStorageAccess) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2674 { |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
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4936
diff
changeset
|
2675 std::string unusedInstanceId; |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
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4939
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|
2676 Json::Value* unusedDicomAsJson = NULL; |
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2677 DicomMap unusedMainDicomTags; |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
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|
2678 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2679 return ExpandResource(target, publicId, unusedMainDicomTags, unusedInstanceId, unusedDicomAsJson, level, format, requestedTags, allowStorageAccess); |
4937
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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4936
diff
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|
2680 } |
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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4936
diff
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|
2681 |
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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diff
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|
2682 bool ServerContext::ExpandResource(Json::Value& target, |
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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diff
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|
2683 const std::string& publicId, |
4940
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
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|
2684 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2685 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
5060
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2686 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4937
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2687 ResourceType level, |
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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4936
diff
changeset
|
2688 DicomToJsonFormat format, |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2689 const std::set<DicomTag>& requestedTags, |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2690 bool allowStorageAccess) |
4937
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2691 { |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2692 ExpandedResource resource; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2693 |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2694 if (ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceFlags_DefaultExtract, allowStorageAccess)) |
4939 | 2695 { |
5568
b0b5546f1b9f
find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents:
5529
diff
changeset
|
2696 SerializeExpandedResource(target, resource, format, requestedTags, ExpandResourceFlags_DefaultOutput); |
4939 | 2697 return true; |
2698 } | |
2699 | |
2700 return false; | |
2701 } | |
2702 | |
2703 bool ServerContext::ExpandResource(ExpandedResource& resource, | |
2704 const std::string& publicId, | |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2705 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2706 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
4940
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tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
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parents:
4939
diff
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|
2707 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4939 | 2708 ResourceType level, |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2709 const std::set<DicomTag>& requestedTags, |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2710 ExpandResourceFlags expandFlags, |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2711 bool allowStorageAccess) |
4939 | 2712 { |
4940
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2713 // first try to get the tags from what is already available |
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|
2714 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2715 if ((expandFlags & ExpandResourceFlags_IncludeMainDicomTags) && |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2716 mainDicomTags.GetSize() > 0 && |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
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5221
diff
changeset
|
2717 dicomAsJson != NULL) |
4940
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|
2718 { |
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Alain Mazy <am@osimis.io>
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|
2719 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2720 resource.GetMainDicomTags().Merge(mainDicomTags); |
4940
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Alain Mazy <am@osimis.io>
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|
2721 |
4984 | 2722 if (dicomAsJson->isObject()) |
4940
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|
2723 { |
5222
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2724 resource.GetMainDicomTags().FromDicomAsJson(*dicomAsJson); |
4940
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|
2725 } |
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|
2726 |
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|
2727 std::set<DicomTag> retrievedTags; |
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|
2728 std::set<DicomTag> missingTags; |
5222
3a61fd50f804
starting refactoring ExpandedResource
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|
2729 resource.GetMainDicomTags().GetTags(retrievedTags); |
4940
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|
2730 |
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changeset
|
2731 Toolbox::GetMissingsFromSet(missingTags, requestedTags, retrievedTags); |
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|
2732 |
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changeset
|
2733 // if all possible tags have been read, no need to get them from DB anymore |
5669
f690568f0325
Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
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|
2734 if (missingTags.size() > 0 && DicomMap::HasOnlyComputedTags(missingTags)) |
f690568f0325
Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
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|
2735 { |
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changeset
|
2736 resource.missingRequestedTags_ = missingTags; |
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Alain Mazy <am@orthanc.team>
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changeset
|
2737 ComputeTags(resource, *this, publicId, level, requestedTags); |
f690568f0325
Fix C-Find queries not returning computed tags in very specific use-cases
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|
2738 return true; |
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Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
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|
2739 } |
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Fix C-Find queries not returning computed tags in very specific use-cases
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changeset
|
2740 else if (missingTags.size() == 0) |
4940
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|
2741 { |
5222
3a61fd50f804
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2742 expandFlags = static_cast<ExpandResourceFlags>(expandFlags & ~ExpandResourceFlags_IncludeMainDicomTags); |
4940
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|
2743 } |
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|
2744 |
5222
3a61fd50f804
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2745 if (missingTags.size() == 0 && expandFlags == ExpandResourceFlags_None) // we have already retrieved anything we need |
4940
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|
2746 { |
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4939
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changeset
|
2747 return true; |
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4939
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|
2748 } |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2749 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2750 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2751 if (expandFlags != ExpandResourceFlags_None && |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2752 GetIndex().ExpandResource(resource, publicId, level, requestedTags, |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2753 static_cast<ExpandResourceFlags>(expandFlags | ExpandResourceFlags_IncludeMetadata))) // we always need the metadata to get the mainDicomTagsSignature |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2754 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2755 // check the main dicom tags list has not changed since the resource was stored |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2756 if (resource.mainDicomTagsSignature_ != DicomMap::GetMainDicomTagsSignature(resource.GetLevel())) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2757 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2758 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2759 if (lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb)) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2760 { |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2761 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false) |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2762 << " has been stored with another version of Main Dicom Tags list, you should POST to /" |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2763 << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false) |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2764 << "/" << resource.GetPublicId() |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2765 << "/reconstruct to update the list of tags saved in DB. Some MainDicomTags might be missing from this answer."; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2766 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2767 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2768 |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2769 // possibly merge missing requested tags from dicom-as-json |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2770 if (allowStorageAccess && |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2771 !resource.missingRequestedTags_.empty() && |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2772 !DicomMap::HasOnlyComputedTags(resource.missingRequestedTags_)) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2773 { |
4941 | 2774 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2775 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
4941 | 2776 { |
2777 std::set<DicomTag> missingTags; | |
2778 Toolbox::AppendSets(missingTags, resource.missingRequestedTags_); | |
4981 | 2779 for (std::set<DicomTag>::const_iterator it = resource.missingRequestedTags_.begin(); it != resource.missingRequestedTags_.end(); ++it) |
4941 | 2780 { |
2781 if (DicomMap::IsComputedTag(*it)) | |
2782 { | |
2783 missingTags.erase(*it); | |
2784 } | |
2785 } | |
2786 | |
2787 std::string missings; | |
2788 FromDcmtkBridge::FormatListOfTags(missings, missingTags); | |
2789 | |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2790 LOG(WARNING) << "W001: Accessing Dicom tags from storage when accessing " |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2791 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false) |
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5221
diff
changeset
|
2792 << " : " << missings; |
4941 | 2793 } |
2794 | |
2795 | |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2796 std::string instanceId_ = instanceId; |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2797 DicomMap tagsFromJson; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2798 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2799 if (dicomAsJson == NULL) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2800 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2801 if (instanceId_.empty()) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2802 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2803 if (level == ResourceType_Instance) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2804 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2805 instanceId_ = publicId; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2806 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2807 else |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2808 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2809 std::list<std::string> instancesIds; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2810 GetIndex().GetChildInstances(instancesIds, publicId); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2811 if (instancesIds.size() < 1) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2812 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2813 throw OrthancException(ErrorCode_InternalError, "ExpandResource: no instances found"); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2814 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2815 instanceId_ = instancesIds.front(); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2816 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2817 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2818 |
4940
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2819 Json::Value tmpDicomAsJson; |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
2820 ReadDicomAsJson(tmpDicomAsJson, instanceId_, resource.missingRequestedTags_ /* ignoreTagLength */); // read all tags from DICOM and avoid cropping requested tags |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2821 tagsFromJson.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
2822 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
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parents:
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diff
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|
2823 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2824 { |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2825 tagsFromJson.FromDicomAsJson(*dicomAsJson, false /* append */, true /* parseSequences*/); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2826 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
2827 |
5222
3a61fd50f804
starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
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5221
diff
changeset
|
2828 resource.GetMainDicomTags().Merge(tagsFromJson); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2829 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2830 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2831 // compute the requested tags |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
2832 ComputeTags(resource, *this, publicId, level, requestedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
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|
2833 } |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2834 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2835 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2836 return false; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2837 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2838 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2839 return true; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2840 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2841 |
5111
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2842 int64_t ServerContext::GetServerUpTime() const |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2843 { |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2844 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2845 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_; |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2846 |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2847 return elapsed.total_seconds(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2848 } |
224 | 2849 } |